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Conserved domains on  [gi|1590405166|ref|WP_131690967|]
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protein translocase subunit SecF [Pseudoalteromonas sp. DL-6]

Protein Classification

protein translocase subunit SecF( domain architecture ID 1012476)

protein translocase subunit SecF is part of the Sec protein translocase complex; SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA

Gene Ontology:  GO:0015450|GO:0043952
TCDB:  2.A.6.4

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
secF super family cl36212
preprotein translocase subunit SecF; Reviewed
 9-309 8.25e-133

preprotein translocase subunit SecF; Reviewed


The actual alignment was detected with superfamily member PRK13021:

Pssm-ID: 237274 [Multi-domain]  Cd Length: 297  Bit Score: 378.81  E-value: 8.25e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166   9 EAGSRIRYTGMLISAMFVLLSVFTIAQKGLNFGLDFTGGYLTEFTTSQGVELKQLEQFIAKNHQGEFELTAQGN-NHFQL 87
Cdd:PRK13021    4 INLTKWRYISSAISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQQEVSVISASEpGRWVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  88 TQGPINTGN-NDDWKTAISQNPAiNAEVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALLHD 166
Cdd:PRK13021   84 RYAPADTAQsNVDIQQALAPLGT-EVQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHD 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 167 LVLVVGLFAWLQIEFNLTVLASLLAIIGYSLNDSIIVGDRVRELLRIPTNITLkpSSIINSAIKSTLTRTLITSGTTLAT 246
Cdd:PRK13021  163 VIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAI--QEINNQAIVATFSRTMVTSGTTLMT 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1590405166 247 VASVWLLAGAPLQGFAIALFAGIVVGTLSSICIAATLPELLGLSVKNYdkqvdqQTQALMDMP 309
Cdd:PRK13021  241 VGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEHY------KVQVISDTP 297
 
Name Accession Description Interval E-value
secF PRK13021
preprotein translocase subunit SecF; Reviewed
 9-309 8.25e-133

preprotein translocase subunit SecF; Reviewed


Pssm-ID: 237274 [Multi-domain]  Cd Length: 297  Bit Score: 378.81  E-value: 8.25e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166   9 EAGSRIRYTGMLISAMFVLLSVFTIAQKGLNFGLDFTGGYLTEFTTSQGVELKQLEQFIAKNHQGEFELTAQGN-NHFQL 87
Cdd:PRK13021    4 INLTKWRYISSAISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQQEVSVISASEpGRWVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  88 TQGPINTGN-NDDWKTAISQNPAiNAEVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALLHD 166
Cdd:PRK13021   84 RYAPADTAQsNVDIQQALAPLGT-EVQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHD 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 167 LVLVVGLFAWLQIEFNLTVLASLLAIIGYSLNDSIIVGDRVRELLRIPTNITLkpSSIINSAIKSTLTRTLITSGTTLAT 246
Cdd:PRK13021  163 VIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAI--QEINNQAIVATFSRTMVTSGTTLMT 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1590405166 247 VASVWLLAGAPLQGFAIALFAGIVVGTLSSICIAATLPELLGLSVKNYdkqvdqQTQALMDMP 309
Cdd:PRK13021  241 VGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEHY------KVQVISDTP 297
SecF COG0341
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ...
 13-290 1.47e-97

Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440110 [Multi-domain]  Cd Length: 291  Bit Score: 289.26  E-value: 1.47e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  13 RIRYTGMLISAMFVLLSVFTIAQKGLNFGLDFTGGYLTEFTTSQGVELKQLEQFIAKNHQGEFEL-TAQGNNHFQLTQGP 91
Cdd:COG0341    13 KKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVqTFGSDNDVLIRTPP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  92 INTGNND---DWKTAISQNPAiNAEVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALLHDLV 168
Cdd:COG0341    93 LDGESAEeveKVRAALKEAFG-DVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFAVGAVVALLHDVL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 169 LVVGLFAWLQIEFNLTVLASLLAIIGYSLNDSIIVGDRVRELLRIPTNITLkpSSIINSAIKSTLTRTLITSGTTLATVA 248
Cdd:COG0341   172 ITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTL--AEIINLSINQTLSRTINTSLTTLLVVL 249

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1590405166 249 SVWLLAGAPLQGFAIALFAGIVVGTLSSICIAATLPELLGLS 290
Cdd:COG0341   250 ALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
3a0501s07 TIGR00966
protein-export membrane protein SecF; This bacterial protein is always found with the ...
 37-280 1.61e-67

protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273368 [Multi-domain]  Cd Length: 246  Bit Score: 210.98  E-value: 1.61e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  37 GLNFGLDFTGGYLTEFTTSQGVELKQLEQFIAKNHQGEFELTAQGNNH-FQLTQGPINTGNNDDWKTAIS---QNPAINA 112
Cdd:TIGR00966   1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHtIMIRIPTLDTEQSEELREALEealKNVDPDA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 113 EVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALLHDLVLVVGLFAWLQIEFNLTVLASLLAI 192
Cdd:TIGR00966  81 EIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 193 IGYSLNDSIIVGDRVRELLRIPTNITLkpSSIINSAIKSTLTRTLITSGTTLATVASVWLLAGAPLQGFAIALFAGIVVG 272
Cdd:TIGR00966 161 IGYSINDTVVVFDRIRENLRKYTRKTF--TEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVG 238


                  ....*...
gi 1590405166 273 TLSSICIA 280
Cdd:TIGR00966 239 TYSSIFIA 246
SecD_SecF pfam02355
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ...
 101-283 1.60e-58

Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.


Pssm-ID: 280510 [Multi-domain]  Cd Length: 189  Bit Score: 185.89  E-value: 1.60e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 101 KTAISQNPAINAEVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALLHDLVLVVGLFAWLQIE 180
Cdd:pfam02355   2 VEALLKNVGPDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGIE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 181 FNLTVLASLLAIIGYSLNDSIIVGDRVRELLRIPTNITLKpsSIINSAIKSTLTRTLITSGTTLATVASVWLLAGAPLQG 260
Cdd:pfam02355  82 VDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLN--EIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKD 159

                         170       180
                  ....*....|....*....|...
gi 1590405166 261 FAIALFAGIVVGTLSSICIAATL 283
Cdd:pfam02355 160 FSLALLVGVIVGTYSSIFIASPI 182
 
Name Accession Description Interval E-value
secF PRK13021
preprotein translocase subunit SecF; Reviewed
 9-309 8.25e-133

preprotein translocase subunit SecF; Reviewed


Pssm-ID: 237274 [Multi-domain]  Cd Length: 297  Bit Score: 378.81  E-value: 8.25e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166   9 EAGSRIRYTGMLISAMFVLLSVFTIAQKGLNFGLDFTGGYLTEFTTSQGVELKQLEQFIAKNHQGEFELTAQGN-NHFQL 87
Cdd:PRK13021    4 INLTKWRYISSAISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQQEVSVISASEpGRWVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  88 TQGPINTGN-NDDWKTAISQNPAiNAEVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALLHD 166
Cdd:PRK13021   84 RYAPADTAQsNVDIQQALAPLGT-EVQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHD 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 167 LVLVVGLFAWLQIEFNLTVLASLLAIIGYSLNDSIIVGDRVRELLRIPTNITLkpSSIINSAIKSTLTRTLITSGTTLAT 246
Cdd:PRK13021  163 VIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAI--QEINNQAIVATFSRTMVTSGTTLMT 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1590405166 247 VASVWLLAGAPLQGFAIALFAGIVVGTLSSICIAATLPELLGLSVKNYdkqvdqQTQALMDMP 309
Cdd:PRK13021  241 VGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEHY------KVQVISDTP 297
SecF COG0341
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ...
 13-290 1.47e-97

Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440110 [Multi-domain]  Cd Length: 291  Bit Score: 289.26  E-value: 1.47e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  13 RIRYTGMLISAMFVLLSVFTIAQKGLNFGLDFTGGYLTEFTTSQGVELKQLEQFIAKNHQGEFEL-TAQGNNHFQLTQGP 91
Cdd:COG0341    13 KKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVqTFGSDNDVLIRTPP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  92 INTGNND---DWKTAISQNPAiNAEVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALLHDLV 168
Cdd:COG0341    93 LDGESAEeveKVRAALKEAFG-DVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFAVGAVVALLHDVL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 169 LVVGLFAWLQIEFNLTVLASLLAIIGYSLNDSIIVGDRVRELLRIPTNITLkpSSIINSAIKSTLTRTLITSGTTLATVA 248
Cdd:COG0341   172 ITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTL--AEIINLSINQTLSRTINTSLTTLLVVL 249

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1590405166 249 SVWLLAGAPLQGFAIALFAGIVVGTLSSICIAATLPELLGLS 290
Cdd:COG0341   250 ALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
PRK13024 PRK13024
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 13-283 5.30e-75

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 237276 [Multi-domain]  Cd Length: 755  Bit Score: 243.99  E-value: 5.30e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  13 RIRYTGMLISAMFVLLSVFTIAQKGLNFGLDFTGGYLTEFTTSQGVELKQLEQFIAKNHQGEFELTAQGNNHFQL---TQ 89
Cdd:PRK13024  453 KKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSDNNQVlvrTY 532

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  90 GPINTGNNDDWKTAISQNPAIN----AEVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALLH 165
Cdd:PRK13024  533 GILSDDEEADTEIVAKLKNALKndkgGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLGAILALLH 612

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 166 DLVLVVGLFAWLQIEFNLTVLASLLAIIGYSLNDSIIVGDRVRELLRIPTNITLKpsSIINSAIKSTLTRTLITSGTTLA 245
Cdd:PRK13024  613 DVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLR--EIVNKSINQTLSRTINTSLTTLL 690

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1590405166 246 TVASVWLLAGAPLQGFAIALFAGIVVGTLSSICIAATL 283
Cdd:PRK13024  691 VLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPL 728
3a0501s07 TIGR00966
protein-export membrane protein SecF; This bacterial protein is always found with the ...
 37-280 1.61e-67

protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273368 [Multi-domain]  Cd Length: 246  Bit Score: 210.98  E-value: 1.61e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  37 GLNFGLDFTGGYLTEFTTSQGVELKQLEQFIAKNHQGEFELTAQGNNH-FQLTQGPINTGNNDDWKTAIS---QNPAINA 112
Cdd:TIGR00966   1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHtIMIRIPTLDTEQSEELREALEealKNVDPDA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 113 EVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALLHDLVLVVGLFAWLQIEFNLTVLASLLAI 192
Cdd:TIGR00966  81 EIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 193 IGYSLNDSIIVGDRVRELLRIPTNITLkpSSIINSAIKSTLTRTLITSGTTLATVASVWLLAGAPLQGFAIALFAGIVVG 272
Cdd:TIGR00966 161 IGYSINDTVVVFDRIRENLRKYTRKTF--TEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVG 238


                  ....*...
gi 1590405166 273 TLSSICIA 280
Cdd:TIGR00966 239 TYSSIFIA 246
SecD_SecF pfam02355
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ...
 101-283 1.60e-58

Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.


Pssm-ID: 280510 [Multi-domain]  Cd Length: 189  Bit Score: 185.89  E-value: 1.60e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 101 KTAISQNPAINAEVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALLHDLVLVVGLFAWLQIE 180
Cdd:pfam02355   2 VEALLKNVGPDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGIE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 181 FNLTVLASLLAIIGYSLNDSIIVGDRVRELLRIPTNITLKpsSIINSAIKSTLTRTLITSGTTLATVASVWLLAGAPLQG 260
Cdd:pfam02355  82 VDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLN--EIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKD 159

                         170       180
                  ....*....|....*....|...
gi 1590405166 261 FAIALFAGIVVGTLSSICIAATL 283
Cdd:pfam02355 160 FSLALLVGVIVGTYSSIFIASPI 182
PRK14726 PRK14726
protein translocase subunit SecDF;
10-283 4.06e-53

protein translocase subunit SecDF;


Pssm-ID: 237805 [Multi-domain]  Cd Length: 855  Bit Score: 186.08  E-value: 4.06e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  10 AGSRIRYTGM-----LISAMFVLLSVFTIAQKGLNFGLDFTGGYLTEFTTSQGV-ELKQLEQFIAKNHQGEFELTAQGNN 83
Cdd:PRK14726  543 EGANIRFMGIrryvfTLSAALSLASLVLFATVGLNLGIDFTGGSLIEVRAKQGNaDIADIRARLNELNLGEVQVERFGSP 622

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  84 HFQLTQGPINTGNNDDWKTAISQnpaINAEvLSSAY-------IGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLA 156
Cdd:PRK14726  623 RDALIRIASQDGGENAEQSAVTL---VRGE-LEDDYdfrrvevVGPAVSGELTMAATLGVLAALAAILIYIWIRFEWQFA 698

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 157 LGSVVALLHDLVLVVGLFAWLQIEFNLTVLASLLAIIGYSLNDSIIVGDRVRELLRIPTNITLkpSSIINSAIKSTLTRT 236
Cdd:PRK14726  699 VGAIIATLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPL--PILIDASINQTLSRT 776

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1590405166 237 LITSGTTLATVASVWLLAGAPLQGFAIALFAGIVVGTLSSICIAATL 283
Cdd:PRK14726  777 VLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPV 823
2A0604s01 TIGR00916
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ...
 111-277 9.80e-46

protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273336 [Multi-domain]  Cd Length: 192  Bit Score: 153.18  E-value: 9.80e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 111 NAEVLSSAYIG---SQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALLHDLVLVVGLFAWLQIEFNLTVLA 187
Cdd:TIGR00916  25 NAKVISAPVVGtvgPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFGATLTLPGIA 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 188 SLLAIIGYSLNDSIIVGDRVRELLRIPTNITLkpSSIINSAIKSTLTRTLITSGTTLATVASVWLLAGAPLQGFAIALFA 267
Cdd:TIGR00916 105 GLLTIIGYSVDDTVVIFDRIREELRKYKGRTF--REAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGI 182

                         170
                  ....*....|
gi 1590405166 268 GIVVGTLSSI 277
Cdd:TIGR00916 183 GVIAGTYSSI 192
PRK13023 PRK13023
protein translocase subunit SecDF;
13-295 5.78e-36

protein translocase subunit SecDF;


Pssm-ID: 171842 [Multi-domain]  Cd Length: 758  Bit Score: 137.06  E-value: 5.78e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  13 RIRYTGMLISAMFVLLSVFTIAQKGLNFGLDFTGGYLTEFTTSQG-VELKQLEQFIAK-NHQGEFELTAQGNNHFQLTQG 90
Cdd:PRK13023  457 RLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNGdANLEDINERLAElNIDSARVLPAKSPRSALVIIG 536

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  91 PINTGNNDDWKTAISQNPAINAE--VLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALLHDLV 168
Cdd:PRK13023  537 SQEVGDDAEQTVAVKLRGEFEQDysFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVV 616

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 169 LVVGLFAWLQIEFNLTVLASLLAIIGYSLNDSIIVGDRVRELLRIPTNITLkpSSIINSAIKSTLTRTLITSGTTLATVA 248
Cdd:PRK13023  617 ILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPL--PAIIDASINQTLSRTLLTSFVTFLAHV 694

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1590405166 249 SVWLLAGAPLQGFAIALFAGIVVGTLSSICIAATLPELLGLSVKNYD 295
Cdd:PRK13023  695 PLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLKPRETD 741
PRK12911 PRK12911
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 120-297 1.25e-30

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 171815 [Multi-domain]  Cd Length: 1403  Bit Score: 121.89  E-value: 1.25e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  120 IGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALLHDL-----VLVVGLFAWLQIEFNLTVLASLLAIIG 194
Cdd:PRK12911  1224 VSGQLSNKMRTQAVIALFGALGIILLYVSLRFEWRYAFSAICALIHDLlatcaVLVALHFFLQKIQIDLQAIGALMTVLG 1303

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  195 YSLNDSIIVGDRVRE----LLRIPTNItlkpssIINSAIKSTLTRTLITSGTTLATVASVWLLAGAPLQGFAIALFAGIV 270
Cdd:PRK12911  1304 YSLNNTLIIFDRIREdrqeKLFTPMPI------LINDALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGIL 1377

                          170       180
                   ....*....|....*....|....*..
gi 1590405166  271 VGTLSSICIAatlPELLGLSVKNYDKQ 297
Cdd:PRK12911  1378 LGTLSSLYIA---PPLLLFMVRKEERN 1401
secD TIGR01129
protein-export membrane protein SecD; Members of this family are highly variable in length ...
 113-283 6.17e-12

protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273456 [Multi-domain]  Cd Length: 397  Bit Score: 65.77  E-value: 6.17e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 113 EVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWrLALGSVVALLHDLVLVVGLFAWLQIEFNLTVLASLLAI 192
Cdd:TIGR01129 231 QILEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRL-FGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILT 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 193 IGYSLNDSIIVGDRVRELLRIPTNItlkpSSIINSAIKSTLTRTLITSGTTLATVASVWLLAGAPLQGFAIALFAGIVVG 272
Cdd:TIGR01129 310 IGMAVDANVLIYERIKEELRLGKSV----RQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIAS 385

                         170
                  ....*....|.
gi 1590405166 273 TLSSICIAATL 283
Cdd:TIGR01129 386 LFTALVFTRLL 396
PRK08578 PRK08578
preprotein translocase subunit SecF; Reviewed
 20-257 1.94e-11

preprotein translocase subunit SecF; Reviewed


Pssm-ID: 236302 [Multi-domain]  Cd Length: 292  Bit Score: 63.41  E-value: 1.94e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  20 LISAMFVLLSVFTIAQKGLNFGLDFTGGylTEFT-TSQGVELKQLEQFIAKnhQGEFELTAQGNNHFQLTQGPINTGNND 98
Cdd:PRK08578   24 LLLSLLLLGGTFATTGSPVKLGIDFTGG--TEITiQTNDASPDELESALSG--EPGVDVRKGSGNGYIITFGSGDDTDVD 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  99 DWKTAIS---QNPAINAEVLSSAYIGSQVGDELFEQGCLAL---FAAMvAVMIYLAVRfEWRLALGSVVALLHDLVLVVG 172
Cdd:PRK08578  100 KLADAVKeffNVDSISELNYSEKQIGPTFGSQFQEQALKAVgfaFIGM-AVVVFLIFR-TPVPSLAVILSAFSDIIIALA 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 173 LFAWLQIEFNLTVLASLLAIIGYSLnDSIIvgdrvreLLripTNITLKPSSIINSAIKSTLTRTLITSGTTLATVASVWL 252
Cdd:PRK08578  178 LMNLFGIELSLATVAALLMLIGYSV-DSDI-------LL---TTRVLKRRGTFDESIKRAMRTGITMTLTTIAAMAVLYI 246


                  ....*
gi 1590405166 253 LAGAP 257
Cdd:PRK08578  247 VSTIP 251
SecD COG0342
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ...
 113-277 5.55e-11

Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440111 [Multi-domain]  Cd Length: 434  Bit Score: 62.83  E-value: 5.55e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 113 EVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFewRLA-LGSVVALLHDLVLVVGLFAWLQIEFNLTVLASLLA 191
Cdd:COG0342   254 EIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYY--RLPgLVANIALALNVVLLLGVLSLLGATLTLPGIAGIIL 331

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 192 IIGYSLNDSIIVGDRVRELLRIptniTLKPSSIINSAIKSTLtRTLITS-GTTLATVASVWLLAGAPLQGFAIALFAGIV 270
Cdd:COG0342   332 TIGMAVDANVLIFERIREELRA----GRSLRAAIEAGFKRAF-STILDAnVTTLIAAVVLFVLGTGPVKGFAVTLILGIL 406


                  ....*..
gi 1590405166 271 VGTLSSI 277
Cdd:COG0342   407 ISMFTAV 413
PRK13024 PRK13024
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 112-296 4.28e-09

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 237276 [Multi-domain]  Cd Length: 755  Bit Score: 57.55  E-value: 4.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 112 AEVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVrFEWRLALGSVVALLHDLVLVVGLFAWLQIEFNLTVLASLLA 191
Cdd:PRK13024  248 LKIIESRSVGPTLGQDAIDAGIIAGIIGFALIFLFMLV-YYGLPGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVL 326

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 192 IIGYSLNDSIIVGDRVRELLRIptNITLKPSsiINSAIKSTLTRTLITSGTTLATVASVWLLAGAPLQGFAIALFAGIVV 271
Cdd:PRK13024  327 GIGMAVDANVLIFERIKEELRK--GKSLKKA--FKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILA 402

                         170       180
                  ....*....|....*....|....*
gi 1590405166 272 GTLSSICIAATLPELLglsVKNYDK 296
Cdd:PRK13024  403 SLFTAVFLTRLLLELL---VKRGDK 424
2A067 TIGR00921
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ...
 134-287 6.86e-07

The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 273340 [Multi-domain]  Cd Length: 719  Bit Score: 50.61  E-value: 6.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 134 LALFAAMVAVMIYLAVRFEWRLALGSVVaLLHDLVLVVGLFAWLQIEFNLTVLASLLAIIGYSLNDSIIVGDRVRELLRI 213
Cdd:TIGR00921 199 MAISGILVVLVLLLDFKRWWRPLLPLVI-ILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDI 277

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1590405166 214 PTNItlkpSSIINSAIKSTLTRTLITSGTTLATVASVwLLAGAP-LQGFAIALFAGIVVGTLSSICIaatLPELL 287
Cdd:TIGR00921 278 GRAK----GEAIVTAVRRTGRAVLIALLTTSAGFAAL-ALSEFPmVSEFGLGLVAGLITAYLLTLLV---LPALL 344
PRK12911 PRK12911
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 113-269 1.32e-06

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 171815 [Multi-domain]  Cd Length: 1403  Bit Score: 49.86  E-value: 1.32e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  113 EVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALLhDLVLVVGLFAWLQIEFNLTVLASLLAI 192
Cdd:PRK12911   892 EVLSEEVISPELGKSQRTQGIISVCLGLAVLIVLMSVYYRFGGVIASGAVLL-NLLLIWAALQYLDAPLTLSGLAGIVLA 970

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  193 IGYSLNDSIIVGDRVRE---LLRiptniTLKPSsiINSAIKSTLTRTLITSGTTLATVASVWLLAGAPLQGFAIALFAGI 269
Cdd:PRK12911   971 MGMAVDANVLVFERIREeylLSR-----SLSES--VEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGI 1043
secD PRK08343
preprotein translocase subunit SecD; Reviewed
 110-274 1.48e-05

preprotein translocase subunit SecD; Reviewed


Pssm-ID: 236245 [Multi-domain]  Cd Length: 417  Bit Score: 46.02  E-value: 1.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 110 INAEVLSSAYIGSQVGDELFEQ----GCLALFAamVAVMIYLAVRfEWRLALGSVVALLHDLVLVVGLFAWLQIEFNLTV 185
Cdd:PRK08343  241 VKLDIEGSGSVSPSLGEQFKKGsliaGLLALLA--VALVVFLRYR-EPRIALPMVITSLSEVIIILGFAALIGWQLDLAS 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 186 LASLLAIIGYSLNDSIIVGDrvrELLRiptNITLKPSSIINSAIKSTLTRTLITSGTTLATVASVWLLAGAPLQGFAIAL 265
Cdd:PRK08343  318 IAGIIAVIGTGVDDLIIITD---EVLH---EGKVPSRKVFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITT 391


                  ....*....
gi 1590405166 266 FAGIVVGTL 274
Cdd:PRK08343  392 ILGVLIGVL 400
MMPL COG1033
Predicted exporter protein, RND superfamily [General function prediction only];
106-279 2.79e-05

Predicted exporter protein, RND superfamily [General function prediction only];


Pssm-ID: 440656 [Multi-domain]  Cd Length: 767  Bit Score: 45.62  E-value: 2.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 106 QNPAINAEVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFE-WRLALGSVVALLHDLVLVVGLFAWLQIEFNL- 183
Cdd:COG1033   194 EDPGVEVYLTGFPVLRGDIAEAIQSDLAIFFPLALLLILLLLFLFFRsLRGVLLPLLVVLLAVIWTLGLMGLLGIPLSPl 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 184 -TVLASLLAIIGysLNDSIIVGDRVRELLRIptniTLKPSSIINSAIKSTLTRTLITSGTTLATVASVWLLAGAPLQGFA 262
Cdd:COG1033   274 tILVPPLLLAIG--IDYGIHLLNRYREERRK----GLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFG 347

                         170
                  ....*....|....*..
gi 1590405166 263 IALFAGIVVGTLSSICI 279
Cdd:COG1033   348 IVAAIGVLLAFLTSLTL 364
secD PRK05812
preprotein translocase subunit SecD; Reviewed
 120-277 4.09e-05

preprotein translocase subunit SecD; Reviewed


Pssm-ID: 235615 [Multi-domain]  Cd Length: 462  Bit Score: 44.83  E-value: 4.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 120 IGSQVGDELFEQGCLALFAAMVAVMIYLAVRFewRLA-LGSVVALLHDLVLVVGLFAWLQIEFNLTVLASLLAIIGYSLN 198
Cdd:PRK05812  287 IGPSLGADSIRAGLIAGLIGLALVLLFMILYY--RLFgLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVD 364

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 199 DSIIVGDRVRELLRipTNITLKP----------SSIINSAIkstltrtlitsgTTLATVASVWLLAGAPLQGFAIALFAG 268
Cdd:PRK05812  365 ANVLIFERIREELR--EGRSLRSaieagfkrafSTILDSNI------------TTLIAAIILYALGTGPVKGFAVTLGIG 430


                  ....*....
gi 1590405166 269 IVVGTLSSI 277
Cdd:PRK05812  431 ILTSMFTAI 439
PRK14726 PRK14726
protein translocase subunit SecDF;
120-287 5.85e-05

protein translocase subunit SecDF;


Pssm-ID: 237805 [Multi-domain]  Cd Length: 855  Bit Score: 44.71  E-value: 5.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 120 IGSQVGDELFEQGCLALF--AAMVAVMIYLAVRFewrLALGSVVALLHDLVLVVGLFAWLQIEFNLTVLASLLAIIGYSL 197
Cdd:PRK14726  362 VGPGLGADSIAAGLVAGLiaAILVAALMIGFYGF---LGVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAV 438

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 198 NDSIIVGDRVREllriptniTLKPSSIINSAIKSTLTRTLIT----SGTTLATVASVWLLAGAPLQGFAIALfagiVVGT 273
Cdd:PRK14726  439 DSNVLIYERIRE--------EEKTGHSLIQALDRGFSRALATivdaNVTILIAAVILFFLGSGAVRGFAVTL----AVGI 506

                         170
                  ....*....|....
gi 1590405166 274 LSSICIAATLPELL 287
Cdd:PRK14726  507 LTTVFTAFTLTRSL 520
MMPL COG1033
Predicted exporter protein, RND superfamily [General function prediction only];
98-287 8.07e-05

Predicted exporter protein, RND superfamily [General function prediction only];


Pssm-ID: 440656 [Multi-domain]  Cd Length: 767  Bit Score: 44.08  E-value: 8.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166  98 DDWKTAISQNPAINAEVLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRF-EWRLALGSVVALLHDLVLVVGLFAW 176
Cdd:COG1033   573 RAFLAENFPPDGVEVTLTGSAVLFAAINESVIESQIRSLLLALLLIFLLLLLAFrSLRLGLISLIPNLLPILLTFGLMGL 652

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 177 LQIEFNLT--VLASLlaIIGYSLNDSIIVGDRVRELLRIPTNITLkpssiinsAIKSTLTRT----LITSGTTLATVaSV 250
Cdd:COG1033   653 LGIPLNIAtaVVASI--ALGIGVDYTIHFLSRYREERRKGGDLEE--------AIRRALRTTgkaiLFTSLTLAAGF-GV 721

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1590405166 251 WLLAG-APLQGFAIALFAGIVVGTLSSICIaatLPELL 287
Cdd:COG1033   722 LLFSSfPPLADFGLLLALGLLVALLAALLL---LPALL 756
PRK13023 PRK13023
protein translocase subunit SecDF;
114-269 4.10e-04

protein translocase subunit SecDF;


Pssm-ID: 171842 [Multi-domain]  Cd Length: 758  Bit Score: 41.91  E-value: 4.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 114 VLSSAYIGSQVGDELFEQGCLALFAAMVAVMIYLAVRFEWrLALGSVVALLHDLVLVVGLFAWLQIEFNLTVLASLLAII 193
Cdd:PRK13023  262 VLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGI-LGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTI 340

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1590405166 194 GYSLNDSIIVGDRVRELLRIPTNITLKPSSIINSAIKSTLTRTLitsgTTLATVASVWLLAGAPLQGFAIALFAGI 269
Cdd:PRK13023  341 GLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL----TTLIAALVLFLLGSGTVHGFALTVAIGI 412
Sec_GG pfam07549
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ...
 33-58 6.34e-04

SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.


Pssm-ID: 462205 [Multi-domain]  Cd Length: 27  Bit Score: 36.50  E-value: 6.34e-04
                          10        20
                  ....*....|....*....|....*.
gi 1590405166  33 IAQKGLNFGLDFTGGYLTEFTTSQGV 58
Cdd:pfam07549   2 LFTRGLNLGLDFTGGTVIELQFDQPV 27
secD PRK12933
protein translocase subunit SecD;
120-277 9.01e-04

protein translocase subunit SecD;


Pssm-ID: 183831 [Multi-domain]  Cd Length: 604  Bit Score: 40.82  E-value: 9.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 120 IGSQVGDELFEQGCLALFAAMVAVMIYLAVrfeWRLALGSV--VALLHDLVLVVGLFAWLQ-IEFNLTVLASLLAIIGYS 196
Cdd:PRK12933  430 IGPSLGAENIENGFAALALGMGITLLFMAL---WYRRLGWVanVALIANMVCLFGLLALIPgAVLTLPGIAGLVLTVGMA 506

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590405166 197 LNDSIIVGDRVRELLRIPTNITLKpssiINSAIKSTLTRTLITSGTTLATVASVWLLAGAPLQGFAIALFAGIVVGTLSS 276
Cdd:PRK12933  507 VDTNVLIFERIKDKLKEGRSFAQA----IDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTG 582


                  .
gi 1590405166 277 I 277
Cdd:PRK12933  583 I 583
COG4258 COG4258
Predicted exporter [General function prediction only];
136-197 9.43e-03

Predicted exporter [General function prediction only];


Pssm-ID: 443400 [Multi-domain]  Cd Length: 783  Bit Score: 37.52  E-value: 9.43e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1590405166 136 LFAAMVAVMIYLAVR-FEWRLALGSVVALLHDLVLVVGLFAWLQIEFNL-TVLASLLAI---IGYSL 197
Cdd:COG4258   645 LLLALLLILLLLLLRlRSLRRALRVLLPPLLAVLLTLAILGLLGIPLNLfHLIALLLVLgigIDYAL 711
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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