|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
3-620 |
0e+00 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 826.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 3 YQETAKAILAAVGGKTNIQRVTHCVTRLRLVLKNDEKVKDQQVKAISNVIGVMRKNGQYQIILGNDVNNYYQAFLSLGHF 82
Cdd:TIGR01995 1 YQDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMDVLGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 83 DNQDEDHSSKAKGSILERLIETIAGVITPLIPALLGGGMLKVVGILLPMLGLASADSQTVAFINFFGDAAYYFMPVMIAY 162
Cdd:TIGR01995 81 DDQAEDDDSKGKKSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADSQTYQILNAMGDAVFYFLPILLAI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 163 SAAARFKVTPVLAATIAGILLHPAFVAMVVEGKPLALFGAPVTPASYGSSVIPILMMVYLMQYIEKWVNRLVPSVMKSFL 242
Cdd:TIGR01995 161 TAAKRFKVNPYLAAAIGAALLHPTLVAMVGSGKPVTFFGIPVTLMSYSSSVIPVILAVWLMSYVEKFLKKVIPGALKNFL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 243 QPTLIILISGFLALVVVGPLGVIIGQGLSNTMLAIYHVAPWLALAILGAIMPLVVMTGMHWAFAPIFLAASVAT-PDVLI 321
Cdd:TIGR01995 241 TPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSPWLAGALLAALWPVLVMFGLHWAMIPIVINNIATQgFDPLI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 322 LPAMLASNLAQGAASLAVAFKTKQKQTRQVALAAGISALLaGITEPALYGVTLKFKKPLYAAMISCGLVGAFIGFVNIAS 401
Cdd:TIGR01995 321 LPASLAANFAQGGAALAVMLRTKNKKLKALAGSATISALF-GITEPAIYGVNLPLKKPFYAAMIGGAVGGAIIGIGSVKA 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 402 YTFVVPSIIGLPQYINPSGGANFTNALIAGAATIVLAFSLTWFMGIDEESpkqvsvaADMSQVKSGLSTKQTLYAPMTGE 481
Cdd:TIGR01995 400 FTAFAPGLLGLPMFINPSDGANFISALIAIVISFVVSFVLTYFIGFKDQE-------DVVTQEAAALSKDESLYAPVAGE 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 482 MLFLSEVPDETFSSKLLGEGFAILPSEGEVYAPFDGEVITFFPTKHAVAIKNARGVEVLIHVGIDTVELKGQGFEQLVSV 561
Cdd:TIGR01995 473 MLPLNEVPDEVFSSGAMGKGIAILPTEGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEGFEILVKV 552
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622294789 562 GDVVKRGQALLKMDIDFITSKGYSLISPVVVTNSAEQLEIIIQdDKKIVTKEDALLVIL 620
Cdd:TIGR01995 553 GDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPT-DKETVTAGDVLLRLI 610
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
1-603 |
1.65e-143 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 430.29 E-value: 1.65e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 1 MTYQETAKAILAAVGGKTNIQRVTHCVTRLRLVLKNDEKVKDQQVKAISNVIGVMRKNGQYQIILGNDVNNYYQAFLSL- 79
Cdd:PRK09824 1 MEYTELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVADVFLAVNSVa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 80 GHFDNQDEDHSSKAKGSILERLIETIAGVITPLIPALLGGGMLKVVGILLPMLGLASADSQTVAFINFFGDAAYYFMPVM 159
Cdd:PRK09824 81 GLGEKAQQAPENDKKGNLLNRFIDVISGIFTPLIGVMAATGILKGMLALALTFGWTTEQSGTYKILFAASDALFFFFPII 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 160 IAYSAAARFKVTPVLAATIAGILLHP----AFVAMVVEGKP-LALFGAPVTPASYGSSVIPILMMVYLMQYIEKWVNRLV 234
Cdd:PRK09824 161 LGYTAGKKFGGNPFTAMVIGGALVHPlmiaAFEAGQKADALgLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRLNAWL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 235 PSVMKSFLQPTLIILISGFLALVVVGPLGVIIGQGLSNTMLAIYHVAPWLALAILGAIMPLVVMTGMHWAFAPIFLA-AS 313
Cdd:PRK09824 241 PSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLSELLAAGYQWLYQAVPAFAGAVMGAFWQVFVIFGLHWGLVPLMINnLT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 314 VATPDVLiLPAMLASNLAQGAASLAVAFKTKQKQTRQVALAAgISALLAGITEPALYGVTLKFKKPLYAAMISCGLVGAF 393
Cdd:PRK09824 321 VLGHDTM-LPLLMPAVMAQVGAALGVFLCTRDAQKKVVAGSA-FLAGLFGITEPAVYGVNLPLKRPFIFGCISGALGAAI 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 394 IGFVNIASYTFVVPSIIGLPQYInPSGGANFT--NALIAGAATIVLAFSLTWFMGI--DEESPKQVSVAADMSQVKSGLS 469
Cdd:PRK09824 399 IGYAQTKVYSFGLPSIFTFMQTI-PPTGIDFTvwASVIGTVIAIGCAFVGTVMFGFptAKRQPAQVAPQEKTPEVITPPE 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 470 TKQTLyAPMTGEMLFLSEVPDETFSSKLLGEGFAILPSEGEVYAPFDGEVITFFPTKHAVAIKNARGVEVLIHVGIDTVE 549
Cdd:PRK09824 478 QGGIC-SPMTGEVVPLEQVADTTFASGLLGKGIAILPSVGEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVK 556
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 1622294789 550 LKGQGFEQLVSVGDVVKRGQALLKMDIDFITSKGYSLISPVVVTNSAEQLEIII 603
Cdd:PRK09824 557 LDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTDVLP 610
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
1-449 |
3.53e-120 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 364.89 E-value: 3.53e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 1 MTYQETAKAILAAVGGKTNIQRVTHCVTRLRLVLKNDEKVKDQQVKAISNVIGVMRKNGQYQIILGNDVNNYYQAFLSLG 80
Cdd:PRK09796 3 KNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 81 HFDNQDEDHSSKAK-------GSILERLIetiaGVITPLIPALLGGGMLKVVGILLPMLGLASADSQTVAFINFFGDAAY 153
Cdd:PRK09796 83 PGDMQPAQPVGKPKltlrrigAGILDALI----GTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 154 YFMPVMIAYSAAARFKVTPVLAATIAGILLHPAFV---AMVVEGKPLALFGAPVTPASYGSSVIPILMMVYLMQYIEKWV 230
Cdd:PRK09796 159 FFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIelmAKAAQGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 231 NRLVPSVMKSFLQPTLIILISGFLALVVVGPLGVIIGQGLSNTMLAIYHVAPWLALAILGAIMPLVVMTGMHWAFAPIFL 310
Cdd:PRK09796 239 DRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTII 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 311 AASVAT-PDVLILPAMLASNLAQGAASLAVAFKTKQKQTRQVALAAGISALLAGITEPALYGVTLKFKKPLYAAMISCGL 389
Cdd:PRK09796 319 QTIAETgKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFI 398
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 390 VGAFIGFVNIASYTFVVPSIIGLPQYINPSGGANFTNALIAGAATIVLAFSLTWFMGIDE 449
Cdd:PRK09796 399 CGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFILTLLLGFED 458
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
91-555 |
1.46e-105 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 326.90 E-value: 1.46e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 91 SKAKGSILERLIETIAGVITPLIPALLGGGMLKVVGILLPMLGL---ASADSQTVAFINFFGDAAYYFMPVMIAYSAAAR 167
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLlgeGSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 168 FKVTPVLAATIAGILLHPAFV-AMVVEGKPLALFGAPvTPASYGSSVIPILMMVYLMQYIEKWVNRLVPSVMKSFLQPTL 246
Cdd:COG1263 81 FGGNPALAAVIGYLLVHPTLLnAYAVAGGYISFLGIP-TLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVPIL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 247 IILISGFLALVVVGPLGVIIGQGLSNTMLAIYHVAPWLALAILGAIMPLVVMTGMHWAFAPIFLAASVATPDVLILPAML 326
Cdd:COG1263 160 TLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGLFPILA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 327 ASNLAQGAASLAVAFKTK-QKQTRQVALAAGISALLAGITEPALYGVTLKFKKPLYAAMISCGLVGAFIGFVNIASYTFV 405
Cdd:COG1263 240 AAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSFG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 406 VPSIIGLPQYINPsGGANFTNALIAGAATIVLAFSLTWFMGIDEEspkqvSVAADMSQVKSGLSTKQTLYAPMTGEMLFL 485
Cdd:COG1263 320 VGGLIDFPSILNP-GATNLLLYLIGLVIAFVYYFVFTFLIGREDE-----EEEEKLATKADAKKEEAEAAAAALGGGGGL 393
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 486 SEVPDETFSSKLLGEGFAILPSEGEVYAPFDGEVITFFPTKHAVAIKNARGVEVLIHVGIDTVELKGQGF 555
Cdd:COG1263 394 LLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIILVVVLEGLGE 463
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
3-444 |
9.83e-105 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 324.64 E-value: 9.83e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 3 YQETAKAILAAVGGKTNIQRVTHCVTRLRLVLKNDEKVKDQQVKAISNVIGVMRKNGQYQIILGN-DVNNYYQAFLSL-G 80
Cdd:TIGR01996 2 YQQVAKEILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENLDGVKGTFFNSGQYQIIIGTgVVNKVYDEIVKLtG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 81 HFDNQDEDHSSKA--KGSILERLIETIAGVITPLIPALLGGG-------MLKVVGILLPML-GLASADSQTVAFINFFGD 150
Cdd:TIGR01996 82 LSESSTSEQKAEAakKMNPFQRFARTLSDIFVPIIPAIVATGllmglngMLTAFGLFGLSGvSVAPIPEGLAEMINVFTS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 151 AAYYFMPVMIAYSAAARFKVTPVLAATIAGILLHPAFV------AMVVEGKPLALFGAPVTPASYGSSVIPILMMVYLMQ 224
Cdd:TIGR01996 162 TAFAFLPILIGFSAAKRFGGNPYLGAVIGLIMVHPSLPnaygvaAGTATGKAWNIFGLHIPVVGYQGTVLPVLVAVWILA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 225 YIEKWVNRLVPSVMKSFLQPTLIILISGFLALVVVGPLGVIIGQGLSNTMLAIYHVAPWLALAILGAIMPLVVMTGMHWA 304
Cdd:TIGR01996 242 KIEKFLRKVVPNALDLLLTPFLTLLITGFLTLLVIGPIGRWVGDVLTDGLQWLYDLPGGLGGLLFGGLYSLIVITGIHHS 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 305 FAPI--FLAASVATPDVLILPAMLASNLAQGAASLAVAFKTKQKQTRQVALAAGISALLaGITEPALYGVTLKFKKPLYA 382
Cdd:TIGR01996 322 FHAIetQLLANTKTGGNFLFPIASMANVAQGGAALAVFFKTKDKKLKGLAIPSGLSALL-GITEPAIFGVNLRYRKPFIA 400
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622294789 383 AMISCGLVGAFIGFVNIASYTFVVPSIIGLPQYINpsGGANFTNALIAGAATIVLAFSLTWF 444
Cdd:TIGR01996 401 ALIGGAIGGAYVVLFHVAATAYGLTGIPGFLSILP--SGINLLHYIVGMLIAFAVAFIATLL 460
|
|
| NagE |
COG2190 |
Phosphotransferase system IIA component [Carbohydrate transport and metabolism]; |
469-619 |
6.66e-68 |
|
Phosphotransferase system IIA component [Carbohydrate transport and metabolism];
Pssm-ID: 441793 [Multi-domain] Cd Length: 154 Bit Score: 217.69 E-value: 6.66e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 469 STKQTLYAPMTGEMLFLSEVPDETFSSKLLGEGFAILPSEGEVYAPFDGEVITFFPTKHAVAIKNARGVEVLIHVGIDTV 548
Cdd:COG2190 3 SKTLTIYAPVSGEVVPLSEVPDPVFASKMMGDGVAIEPTGGKVVAPVDGTVTSVFPTKHAIGLTSDDGLEVLIHIGIDTV 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622294789 549 ELKGQGFEQLVSVGDVVKRGQALLKMDIDFITSKGYSLISPVVVTNSAEQLEIIIQDDKKiVTKEDALLVI 619
Cdd:COG2190 83 KLNGEGFTVLVKEGDKVKAGDPLIEFDLDAIKAAGYSLITPVVVTNSDEYKSVELTKSGQ-VKAGDPLLTV 152
|
|
| PTS_EIIA_1 |
pfam00358 |
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; |
472-592 |
1.02e-60 |
|
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1;
Pssm-ID: 459779 [Multi-domain] Cd Length: 121 Bit Score: 197.60 E-value: 1.02e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 472 QTLYAPMTGEMLFLSEVPDETFSSKLLGEGFAILPSEGEVYAPFDGEVITFFPTKHAVAIKNARGVEVLIHVGIDTVELK 551
Cdd:pfam00358 1 IEIYSPVSGEVIPLSEVPDPVFSQKMMGDGVAIEPSEGKVYAPVDGTVTTVFPTKHAIGITTDDGVEVLIHIGIDTVKLK 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1622294789 552 GQGFEQLVSVGDVVKRGQALLKMDIDFITSKGYSLISPVVV 592
Cdd:pfam00358 81 GEGFESLVKEGDKVKAGDLLLEFDLEAIKAAGYSTTTPVVV 121
|
|
| PTS_IIA_glc |
cd00210 |
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
474-597 |
7.35e-54 |
|
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Pssm-ID: 238128 [Multi-domain] Cd Length: 124 Bit Score: 179.79 E-value: 7.35e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 474 LYAPMTGEMLFLSEVPDETFSSKLLGEGFAILPSEGEVYAPFDGEVITFFPTKHAVAIKNARGVEVLIHVGIDTVELKGQ 553
Cdd:cd00210 1 LASPITGEIVPLDQVPDEVFASKMMGDGFAIKPSDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1622294789 554 GFEQLVSVGDVVKRGQALLKMDIDFITSKGYSLISPVVVTNSAE 597
Cdd:cd00210 81 GFTSHVEEGQRVKQGDKLLEFDLPAIKAAGLDDTTPVIVTNSDE 124
|
|
| PTBA |
TIGR00830 |
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside ... |
474-594 |
1.22e-53 |
|
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. The three-dimensional structures of the IIA and IIB domains of the E. coli glucose permease have been elucidated. IIAglchas a complex b-sandwich structure while IIBglc is a split ab-sandwich with a topology unrelated to the split ab-sandwich structure of HPr. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273289 [Multi-domain] Cd Length: 121 Bit Score: 178.98 E-value: 1.22e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 474 LYAPMTGEMLFLSEVPDETFSSKLLGEGFAILPSEGEVYAPFDGEVITFFPTKHAVAIKNARGVEVLIHVGIDTVELKGQ 553
Cdd:TIGR00830 1 IVSPISGEIVPLDQVPDEVFASKIVGDGFAILPTDGKVVAPVDGKIGKIFPTKHAFGIESDNGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1622294789 554 GFEQLVSVGDVVKRGQALLKMDIDFITSKGYSLISPVVVTN 594
Cdd:TIGR00830 81 GFTSHVEEGDRVKKGDPLLEFDLKAIKKKGYSITTPVVVTN 121
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
149-431 |
6.10e-53 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 182.90 E-value: 6.10e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 149 GDAAYYFMPVMIAYSAAARFKVTPVLAATIAGILLHPAFVAMVVEGKPL--ALFGAPVTPASYGSSVIPILMMVYLMQYI 226
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAvgNFFGFEIAKVGYTGVVGPIIVGAIALALH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 227 EKWVNRLVPSVMKSFLQPTLIILISGFLALVVVGPLGVIIGQGLSNTMLA-IYHVAPWLALAILGAIMPLVVMTGMHWAF 305
Cdd:TIGR00852 81 ERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPVGISALLHwLYSAGGALGGAIFGFLYRLLVPTGLHHIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 306 APIF---LAASVATPDVLILPAMLASNLAQGAASLAVAFKTKQKQTRQVALAAGISALLaGITEPALYGVTLKFKKPLYA 382
Cdd:TIGR00852 161 YAIFiqlIAGGTVIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSIGLPAAFSAGL-GITEPAMYGVALRERRPFVA 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1622294789 383 AMISCGLVGAFIGFVNIASYTFVVPSIIGLPQYINPSGGANFTNALIAG 431
Cdd:TIGR00852 240 GLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVLAGSIFTVAIGMG 288
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
14-445 |
7.30e-53 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 188.36 E-value: 7.30e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 14 VGGKTNIQRVTHCVTRLRLVLKNDEKVKDQQVKAISNVIGVMRKNGQYQIILGNDVNNYYQAFL---SLGHFDNQDEDHS 90
Cdd:PRK11007 17 VGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYKALIattGQAEVDKEQAKKA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 91 SKAKGSILERLIETIAGVITPLIPALLGGGML----KVVGIlLPM-----LGLASADSQTV-AFINFFGDAAYYFMPVMI 160
Cdd:PRK11007 97 ARQNMKWHERLISHFAEIFFPLLPALISGGLIlgfrNVIGD-IPMsdgqtLAQMYPFWQTIyDFLWLIGEAIFFYLPVGI 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 161 AYSAAARFKVTPVLAATIAGILLHPAFVAMVVEGKPL------ALFgaPVTPASYGSSVIPILMMVYLMQYIEKWVNRLV 234
Cdd:PRK11007 176 CWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLpevwdfGLF--SIEKVGYQAQVIPALLAGLALGFIETRLKRIV 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 235 PSVMKSFLQPTLIILISGFLALVVVGPLGVIIGQGLSntmLAIYHV-----APwLALAILGAIMPLVVMTGMHWAFAPIF 309
Cdd:PRK11007 254 PDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVA---FAVKALmtgsfAP-IGAALFGFLYAPLVITGVHQTTLAID 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 310 LAASVATPDVLILPAMLASNLAQGAASLAVAFKTKQKQTRQVALAAGISALLaGITEPALYGVTLKFKKPLYAAMISCGL 389
Cdd:PRK11007 330 LQMIQSMGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYL-GVTEPAMYGINLKYRFPMLCAMIGSAL 408
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 390 VGAFIGFVNIASYTFVV---PSIIGL-PQYinpsgganFTNALIAGAATIVLAFSLTWFM 445
Cdd:PRK11007 409 AGLICGLNGVMANGIGVgglPGILSIqPQY--------WQVYALAMLVAIVVPIVLTSFI 460
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
4-446 |
2.29e-37 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 145.20 E-value: 2.29e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 4 QETAKAILAAVGGKTNIQRVTHCVTRLRLVLKNDEKVKDQQVKAISNVIGVMRKNGQYQIILG----NDVNNYYQAFLSL 79
Cdd:PRK09586 6 SELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGpgkaQRAAKAMNELLGE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 80 GHFDNQD--------EDHSSKAKGSILERLIETIAGVITPLIPALLGGGMLKVVGILLPMLGLASADSQT-----VAFIN 146
Cdd:PRK09586 86 AAAPVQDlaeiaaqnKRQLKAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQVMHVPADAQGtlpdaLNYMK 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 147 FFGDAAYYFMPVMIAYSAAARFKVTPVLAATIAGILL---HPAFVAMVVEGKPlALFGAPVTPAsygSSVIPILMMVYLM 223
Cdd:PRK09586 166 VFSKGLFTFLSILIGYNAQQAFGGTGVNGAIIASLFLlgyNPAATTGYYAGFH-DFFGLPIDPR---GNIIGVLIAAIAG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 224 QYIEKWVNRLVPSVMKSFLQPTLIILISGFLALVVVGPLGVIIGQGLSntMLAIYHVAPWLALAILGAIMPLVVMTGMHW 303
Cdd:PRK09586 242 ARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGMS--WLFMHLNSNPFGCAVLAGLFLIAVVFGVHQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 304 AFAPIFLAASVATPDVLILPAMLASNLAQGAASLAVAFKTKQKQTRQVALAAGISALLAGITEPALYGVTLKFKKPLYAA 383
Cdd:PRK09586 320 GFIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWRAQKHSALRTQVKGAIIPGLLGVGEPLIYGVTLPRMKPFVTA 399
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622294789 384 MISCGLVGAFIGFVN-----IASYTFVVPS-IIGLPQYINPSGgaNFTNALIAGAATIV---LAFSLTWFMG 446
Cdd:PRK09586 400 CLGGAAGGFFIGLIAwlglpVGLNSVFGPSgLVALPLMTSAQG--ILPGMAVYAGGLLVayvCGFIFTTLFG 469
|
|
| PRK09439 |
PRK09439 |
PTS system glucose-specific transporter subunit; Provisional |
474-597 |
8.89e-33 |
|
PTS system glucose-specific transporter subunit; Provisional
Pssm-ID: 181859 [Multi-domain] Cd Length: 169 Bit Score: 123.93 E-value: 8.89e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 474 LYAPMTGEMLFLSEVPDETFSSKLLGEGFAILPSEGEVYAPFDGEVITFFPTKHAVAIKNARGVEVLIHVGIDTVELKGQ 553
Cdd:PRK09439 23 IIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE 102
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1622294789 554 GFEQLVSVGDVVKRGQALLKMDIDFITSKGYSLISPVVVTNSAE 597
Cdd:PRK09439 103 GFKRIAEEGQRVKVGDPIIEFDLPLLEEKAKSTLTPVVISNMDE 146
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
456-619 |
3.08e-30 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 126.14 E-value: 3.08e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 456 SVAADMSQVKSGLSTKQTLYAPMTGEMLFLSEVPDETFSSKLLGEGFAILPSEGEVYAPFDGEVITFFPTKHAVAIKNAR 535
Cdd:PRK10255 483 AAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEK 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 536 GVEVLIHVGIDTVELKGQGFEQLVSVGDVVKRGQALLKMDIDFITSKGYSLISPVVVTNSAEQLEIIIQDDKKIVTKEDA 615
Cdd:PRK10255 563 GAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHVVAGQTP 642
|
....
gi 1622294789 616 LLVI 619
Cdd:PRK10255 643 LYEI 646
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
4-79 |
4.88e-30 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 113.01 E-value: 4.88e-30
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622294789 4 QETAKAILAAVGGKTNIQRVTHCVTRLRLVLKNDEKVKDQQVKAISNVIGVMRKNGQYQIILGNDVNNYYQAFLSL 79
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKL 76
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
109-388 |
5.69e-30 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 120.14 E-value: 5.69e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 109 ITPLIPALLGGGMLKVVGILLPMLGLASADSQTVA-----FINFFGDAAYYFMPVMIAYSAAARF-KVTPVLAATIAGIL 182
Cdd:pfam02378 4 FMPPIPLLIAGGILLGLGNLPNDTTGLPAGGFTGDsplaeILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGLIGL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 183 LHP-------AFVAMVVEGKPLALFGAPVTPASYGSSVIPILMMVYLMQYIEKWVNRLVPSVMKSFLQPTLIILISGFLA 255
Cdd:pfam02378 84 LSFnlaaaisVALTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITGFVT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 256 LVVVGPLGVIIGQGLSNTMLAIYHVA----PWLALAILGAIMPLVVMTGMHWAF--APIFLAASVATPDVLIL------- 322
Cdd:pfam02378 164 LLVIGPVLGLIWPAIQGGLNALGLLLiiagGILGGLIFGFLERLLWPFGLHGAFiaIFWFLPIGGSNPIANQQaygagaa 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622294789 323 ------PAMLASNLAQGAASLAVAFKTKQKQTRQVALAAGISALLAGITEPALYGVTLKFKKPLYAAMISCG 388
Cdd:pfam02378 244 hiltggFDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
4-79 |
3.51e-28 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 107.51 E-value: 3.51e-28
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622294789 4 QETAKAILAAVGGKTNIQRVTHCVTRLRLVLKNDEKVKDQQVKAIsNVIGVMRKNGQYQIILGNDVNNYYQAFLSL 79
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEIEKL 75
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
8-39 |
9.28e-13 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 62.39 E-value: 9.28e-13
10 20 30
....*....|....*....|....*....|..
gi 1622294789 8 KAILAAVGGKTNIQRVTHCVTRLRLVLKNDEK 39
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
3-79 |
8.73e-11 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 63.90 E-value: 8.73e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622294789 3 YQETAKAILAAVGGKTNIQRVTHCVTRLRLVLKNDEKVKDQQVKAISNVIGVMRKNGQYQIILGND-VNNYYQAFLSL 79
Cdd:PRK14905 274 FSEIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILGAGiVEKIHEEMKAL 351
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
28-107 |
1.46e-09 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 55.06 E-value: 1.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622294789 28 TRLRLVLKNDEKVKDQQVKAISNVIGVMRKNGQYQIILGND-VNNYYQAF----LSLGHFDNQDEDHSSKA---KGSILE 99
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTGnVNKVDACItrlrVGVADVSKVDDAVLKKLgahGVNPLQ 80
|
....*...
gi 1622294789 100 RLIETIAG 107
Cdd:TIGR00826 81 RAVQVISG 88
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
4-66 |
8.07e-07 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 47.35 E-value: 8.07e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622294789 4 QETAKAILAAVGGKTNIQRVTHCVTRLRLVLKNDEKVKDQQVKAISnVIGVMRKNGQYQIILG 66
Cdd:TIGR00826 27 VFTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLG-AHGVNPLQRAVQVISG 88
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
7-69 |
1.03e-06 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 51.66 E-value: 1.03e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622294789 7 AKAILAAVGGKTNIQRVTHCVTRLRLVLKNDEKVKDQQVKAiSNVIGVMRKNGQ-YQIILGNDV 69
Cdd:PRK10110 452 VPAILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKD-NRAIGVVQLNQHnLQVVIGPQV 514
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
5-79 |
6.93e-05 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 43.55 E-value: 6.93e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622294789 5 ETAKAILAAVGGKTNIQRVTHCVTRLRLVLKNDEKVKDQQVKAISNVIGVMRKNGQYQIILGNDVNNYYQAFLSL 79
Cdd:PRK09702 71 DQAAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSL 145
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
5-71 |
1.23e-03 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 41.62 E-value: 1.23e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622294789 5 ETAKAILAAVGGKTNIQRVTHCVTRLRLVLKNDEKVKDQQVKAISnVIGVMRKNGQYQIILGNDVNN 71
Cdd:PRK11089 400 EMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLG-AAGVVVAGSGVQAIFGTKSDN 465
|
|
| |
