|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
206-511 |
0e+00 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 516.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 206 ERYDEGLKKSRKTFGDRINAFLAnFRHVDESFFDELEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKDISSVIVEKL 285
Cdd:PRK10416 18 ERLKKGLSKTRENFGEGINGLFA-KKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEEL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 286 VDMYgeagEGEDNSIYLAAQGPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDV 365
Cdd:PRK10416 97 AEIL----EPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 366 VAGAERSDPASVCFDAVKKAKAEDYDILFVDTAGRLQNKVNLMNELEKIKRVITREIPAAPHEVLLVLDATTGQNALNQA 445
Cdd:PRK10416 173 IAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA 252
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1655157926 446 KIFKQSTDVSGIVLTKLDGTARGGIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDFVYGLFKDVI 511
Cdd:PRK10416 253 KAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGGED 318
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
206-509 |
0e+00 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 510.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 206 ERYDEGLKKSRKTFGDRINAFLANFRHVDESFFDELEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKDISSVIVEKL 285
Cdd:COG0552 3 ERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 286 VDMYGEagegEDNSIYLAAQGPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDV 365
Cdd:COG0552 83 LEILDP----VDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 366 VAGAERSDPASVCFDAVKKAKAEDYDILFVDTAGRLQNKVNLMNELEKIKRVITREIPAAPHEVLLVLDATTGQNALNQA 445
Cdd:COG0552 159 IAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQA 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1655157926 446 KIFKQSTDVSGIVLTKLDGTARGGIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDFVYGLFKD 509
Cdd:COG0552 239 KVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGE 302
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
233-507 |
2.17e-136 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 395.09 E-value: 2.17e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 233 VDESFFDELEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKDISSVIVEKLVDMYGEAGEGE-DNSIYLAAQGPTVIL 311
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNtDLELIVEENKPNVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 312 FVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKAKAEDYD 391
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 392 ILFVDTAGRLQNKVNLMNELEKIKRVITREIPAAPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTARGGIV 471
Cdd:TIGR00064 162 VVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGII 241
|
250 260 270
....*....|....*....|....*....|....*.
gi 1655157926 472 LAIRNELHLAVKYVGLGEKVTDLRPFNANDFVYGLF 507
Cdd:TIGR00064 242 LSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
308-506 |
4.20e-114 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 335.31 E-value: 4.20e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 308 TVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKAKA 387
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 388 EDYDILFVDTAGRLQNKVNLMNELEKIKRVITREIPAAPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTAR 467
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 1655157926 468 GGIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDFVYGL 506
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
307-508 |
3.98e-106 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 315.12 E-value: 3.98e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 307 PTVILFVGVNGAGKTTTIGKMANMYKQQG-KKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKA 385
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 386 KAEDYDILFVDTAGRLQNKVNLMNELEKIKRVItreipaAPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGT 465
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVI------KPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1655157926 466 ARGGIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDFVYGLFK 508
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
308-506 |
3.81e-101 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 302.15 E-value: 3.81e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 308 TVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKAKA 387
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 388 EDYDILFVDTAGRLQNKVNLMNELEKIKRVItreipaAPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTAR 467
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 1655157926 468 GGIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDFVYGL 506
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
56-206 |
8.46e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 38.87 E-value: 8.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 56 QATSATPTSAVQTSTASASASLAESAPAVSATSAAISEASAESLASSSTVDASAAGIEADHSaqsEAADQDQSEAPLTAS 135
Cdd:PRK10811 851 QDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVV---ETTHPEVIAAPVTEQ 927
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1655157926 136 EAVARSLAAIRAQAASADAEPVAASTAATTETDtaaekQPAATSETGVVEAPVESTAPASEGASAEPTEAE 206
Cdd:PRK10811 928 PQVITESDVAVAQEVAEHAEPVVEPQDETADIE-----EAAETAEVVVAEPEVVAQPAAPVVAEVAAEVET 993
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
206-511 |
0e+00 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 516.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 206 ERYDEGLKKSRKTFGDRINAFLAnFRHVDESFFDELEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKDISSVIVEKL 285
Cdd:PRK10416 18 ERLKKGLSKTRENFGEGINGLFA-KKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEEL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 286 VDMYgeagEGEDNSIYLAAQGPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDV 365
Cdd:PRK10416 97 AEIL----EPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 366 VAGAERSDPASVCFDAVKKAKAEDYDILFVDTAGRLQNKVNLMNELEKIKRVITREIPAAPHEVLLVLDATTGQNALNQA 445
Cdd:PRK10416 173 IAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA 252
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1655157926 446 KIFKQSTDVSGIVLTKLDGTARGGIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDFVYGLFKDVI 511
Cdd:PRK10416 253 KAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGGED 318
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
206-509 |
0e+00 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 510.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 206 ERYDEGLKKSRKTFGDRINAFLANFRHVDESFFDELEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKDISSVIVEKL 285
Cdd:COG0552 3 ERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 286 VDMYGEagegEDNSIYLAAQGPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDV 365
Cdd:COG0552 83 LEILDP----VDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 366 VAGAERSDPASVCFDAVKKAKAEDYDILFVDTAGRLQNKVNLMNELEKIKRVITREIPAAPHEVLLVLDATTGQNALNQA 445
Cdd:COG0552 159 IAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQA 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1655157926 446 KIFKQSTDVSGIVLTKLDGTARGGIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDFVYGLFKD 509
Cdd:COG0552 239 KVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGE 302
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
233-507 |
2.17e-136 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 395.09 E-value: 2.17e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 233 VDESFFDELEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKDISSVIVEKLVDMYGEAGEGE-DNSIYLAAQGPTVIL 311
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNtDLELIVEENKPNVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 312 FVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKAKAEDYD 391
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 392 ILFVDTAGRLQNKVNLMNELEKIKRVITREIPAAPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTARGGIV 471
Cdd:TIGR00064 162 VVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGII 241
|
250 260 270
....*....|....*....|....*....|....*.
gi 1655157926 472 LAIRNELHLAVKYVGLGEKVTDLRPFNANDFVYGLF 507
Cdd:TIGR00064 242 LSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
308-506 |
4.20e-114 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 335.31 E-value: 4.20e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 308 TVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKAKA 387
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 388 EDYDILFVDTAGRLQNKVNLMNELEKIKRVITREIPAAPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTAR 467
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 1655157926 468 GGIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDFVYGL 506
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
307-508 |
3.98e-106 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 315.12 E-value: 3.98e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 307 PTVILFVGVNGAGKTTTIGKMANMYKQQG-KKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKA 385
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 386 KAEDYDILFVDTAGRLQNKVNLMNELEKIKRVItreipaAPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGT 465
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVI------KPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1655157926 466 ARGGIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDFVYGLFK 508
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
308-506 |
3.81e-101 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 302.15 E-value: 3.81e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 308 TVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKAKA 387
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 388 EDYDILFVDTAGRLQNKVNLMNELEKIKRVItreipaAPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTAR 467
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 1655157926 468 GGIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDFVYGL 506
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
245-498 |
1.43e-85 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 270.35 E-value: 1.43e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 245 LIESDVGYETAMRISDELRDEvklknAKSKKDISSV--------IV-EKLVDMYGeageGEDNSIYLAAQGPTVILFVGV 315
Cdd:COG0541 38 LLEADVNLKVVKDFIERVKER-----ALGEEVLKSLtpgqqvikIVhDELVELLG----GENEELNLAKKPPTVIMMVGL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 316 NGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKAKAEDYDILFV 395
Cdd:COG0541 109 QGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIV 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 396 DTAGRLQNKVNLMNELEKIKRVITreipaaPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTARGGIVLAIR 475
Cdd:COG0541 189 DTAGRLHIDEELMDELKAIKAAVN------PDETLLVVDAMTGQDAVNVAKAFNEALGLTGVILTKLDGDARGGAALSIR 262
|
250 260
....*....|....*....|...
gi 1655157926 476 NELHLAVKYVGLGEKVTDLRPFN 498
Cdd:COG0541 263 AVTGKPIKFIGTGEKLDDLEPFH 285
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
184-507 |
6.98e-84 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 262.99 E-value: 6.98e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 184 VEAPVESTAPASEGASAEPTEAERYDEglKKSRKTFGDRINAFLANFRHVDEsFFDELEDTLIESDVGYETAMRISDELR 263
Cdd:PRK14974 16 VEEKIEEEEEEEAPEAEEEEEEEDEEE--KKEKPGFFDKAKITEIKEKDIED-LLEELELELLESDVALEVAEEILESLK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 264 DEVKLKNAKSKKDISSVIVEKLVDMYGEA---GEGEDNSIYLAAQG-PTVILFVGVNGAGKTTTIGKMANMYKQQGKKVL 339
Cdd:PRK14974 93 EKLVGKKVKRGEDVEEIVKNALKEALLEVlsvGDLFDLIEEIKSKGkPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 340 LAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKAKAEDYDILFVDTAGRLQNKVNLMNELEKIKRVit 419
Cdd:PRK14974 173 IAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRV-- 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 420 reipAAPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTARGGIVLAIRNELHLAVKYVGLGEKVTDLRPFNA 499
Cdd:PRK14974 251 ----TKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDP 326
|
....*...
gi 1655157926 500 NDFVYGLF 507
Cdd:PRK14974 327 DWFVDKLL 334
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
309-503 |
6.01e-79 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 244.98 E-value: 6.01e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 309 VILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKAKAE 388
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 389 DYDILFVDTAGRLQNKVNLMNELEKIKRVITreipaaPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTARG 468
Cdd:cd03115 82 GYDVLLVDTAGRLQKDEPLMEELKKVKEVES------PDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKG 155
|
170 180 190
....*....|....*....|....*....|....*
gi 1655157926 469 GIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDFV 503
Cdd:cd03115 156 GAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFV 190
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
240-503 |
1.43e-70 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 231.63 E-value: 1.43e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 240 ELEDTLIESDVGYETAMRISDELR----DEVKLKNAKSKKDISSVIVEKLVDMYGEAGEGEDNSiylaaQGPTVILFVGV 315
Cdd:PRK00771 29 DIQRALLQADVNVKLVKELSKSIKeralEEEPPKGLTPREHVIKIVYEELVKLLGEETEPLVLP-----LKPQTIMLVGL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 316 NGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKAKaeDYDILFV 395
Cdd:PRK00771 104 QGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK--KADVIIV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 396 DTAGRLQNKVNLMNELEKIKRVItreipaAPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTARGGIVLAIR 475
Cdd:PRK00771 182 DTAGRHALEEDLIEEMKEIKEAV------KPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGTAKGGGALSAV 255
|
250 260
....*....|....*....|....*...
gi 1655157926 476 NELHLAVKYVGLGEKVTDLRPFNANDFV 503
Cdd:PRK00771 256 AETGAPIKFIGTGEKIDDLERFDPDRFI 283
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
308-497 |
4.40e-70 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 222.09 E-value: 4.40e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 308 TVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKAKA 387
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 388 EDYDILFVDTAGRLQNKVNLMNELEKIKRVITreipaaPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTAR 467
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDAR 154
|
170 180 190
....*....|....*....|....*....|
gi 1655157926 468 GGIVLAIRNELHLAVKYVGLGEKVTDLRPF 497
Cdd:cd18539 155 GGAALSIRHVTGKPIKFIGVGEKIEDLEPF 184
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
309-503 |
6.07e-58 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 190.48 E-value: 6.07e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 309 VILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKAKAE 388
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKKE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 389 DYDILFVDTAGRLQNKVNLMNELEKIKRVItreipaAPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTARG 468
Cdd:cd17875 82 KFDIIIVDTSGRHKQEEELFEEMKQISDAV------KPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKG 155
|
170 180 190
....*....|....*....|....*....|....*
gi 1655157926 469 GIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDFV 503
Cdd:cd17875 156 GGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFV 190
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
309-503 |
6.99e-47 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 162.01 E-value: 6.99e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 309 VILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKAKAE 388
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 389 DYDILFVDTAGRLQNKVNLMNELEKIKRVitreipAAPHEVLLVLDATTGQNALNQAKIFKQS-TDVS---------GIV 458
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKE------NNPDLVLFVGEALVGNDAVDQLKKFNQAlADYSpsdnprlidGIV 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1655157926 459 LTKLD------GTArggivLAIRNELHLAVKYVGLGEKVTDLRPFNANDFV 503
Cdd:cd17876 156 LTKFDtiddkvGAA-----LSMVYATGQPIVFVGTGQTYTDLKKLNVKAVV 201
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
240-506 |
2.45e-45 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 164.62 E-value: 2.45e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 240 ELEDTLIESDVGYETAMRISDELRDEVKLKNAKS----KKDISSVIVEKLVDMYGEAGEgednSIYLAAQGPTVILFVGV 315
Cdd:TIGR01425 33 EICTALLESDVNPKLVRQMRNNIKKKINLEDIASginkRKLIQDAVFEELCNLVDPGVE----AFTPKKGKTCVIMFVGL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 316 NGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPASVCFDAVKKAKAEDYDILFV 395
Cdd:TIGR01425 109 QGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIASEGVEKFRKEKFDIIIV 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 396 DTAGRLQNKVNLMNELEKIKRVITreipaaPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTARGGIVLAIR 475
Cdd:TIGR01425 189 DTSGRHKQEKELFEEMQQVREAIK------PDSIIFVMDGSIGQAAFGQAKAFKDSVEVGSVIITKLDGHAKGGGALSAV 262
|
250 260 270
....*....|....*....|....*....|.
gi 1655157926 476 NELHLAVKYVGLGEKVTDLRPFNANDFVYGL 506
Cdd:TIGR01425 263 AATKSPIIFIGTGEHVDEFEIFDAEPFVSKL 293
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
176-503 |
4.05e-39 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 145.78 E-value: 4.05e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 176 AATSETGVVEAPVESTAPASEGASAEPTEAERYDEGLKKSRKTFGDRINAfLANFRHVDESFFDELEDTLIESDVGYETA 255
Cdd:COG1419 47 AAVDEDEAEKAPAAAAAPAAASAAAEEEELEELRRELAELKELLEEQLSG-LAGESARLPPELAELLERLLEAGVSPELA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 256 MRISDELRDEVKLKNAKSKkdissvIVEKLVDMYGEAGEGednsiylAAQGPTVILFVGVNGAGKTTTIGKMANMYK-QQ 334
Cdd:COG1419 126 RELLEKLPEDLSAEEAWRA------LLEALARRLPVAEDP-------LLDEGGVIALVGPTGVGKTTTIAKLAARFVlRG 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 335 GKKVLLAACDTFRAGAIQQLQVWGERDGVdvvagaersdPASVCFDA--VKKA--KAEDYDILFVDTAGRLQNKVNLMNE 410
Cdd:COG1419 193 KKKVALITTDTYRIGAVEQLKTYARILGV----------PVEVAYDPeeLKEAleRLRDKDLVLIDTAGRSPRDPELIEE 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 411 LEKIKRVitreipAAPHEVLLVLDATT-GQNALNQAKIFKqSTDVSGIVLTKLDGTARGGIVLAIRNELHLAVKYVGLGE 489
Cdd:COG1419 263 LKALLDA------GPPIEVYLVLSATTkYEDLKEIVEAFS-SLGLDGLILTKLDETASLGSILNLLIRTGLPLSYITNGQ 335
|
330
....*....|....*
gi 1655157926 490 KVT-DLRPFNANDFV 503
Cdd:COG1419 336 RVPeDIEVADPERLA 350
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
309-503 |
4.55e-31 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 118.81 E-value: 4.55e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 309 VILFVGVNGAGKTTTIGKMANMYK-QQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVagaersdpasVCFDAVKKAKA 387
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLKTYAEIMGIPVE----------VAEDPEDLADA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 388 ----EDYDILFVDTAGRLQNKVNLMNELEKIKRVitreipAAPHEVLLVLDATT-GQNALNQAKIFKqSTDVSGIVLTKL 462
Cdd:cd17873 72 lerlSDRDLILIDTAGRSPRDKEQLEELKELLGA------GEDIEVHLVLSATTkAKDLKEIIERFS-PLGYRGLILTKL 144
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1655157926 463 DGTARGGIVLAIRNELHLAVKYVGLGEKV-TDLRPFNANDFV 503
Cdd:cd17873 145 DETTSLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLA 186
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
176-503 |
6.92e-24 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 103.82 E-value: 6.92e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 176 AATSETGVVEAPVESTAPASEGASAEPTEAERYDEGLKKSRKTFGDRINAFLANFRHVD--ESFFDELEDTLIESDVGYE 253
Cdd:PRK05703 99 NALPEWKKELEKPSEPKEEEPKAAAESKVVQKELDELRDELKELKNLLEDQLSGLRQVEriPPEFAELYKRLKRSGLSPE 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 254 tamrISDELRDEVKLKNAKSKKDISSVIVEKLVDMYGEAGEGEdnsiyLAAQGptVILFVGVNGAGKTTTIGKMAN--MY 331
Cdd:PRK05703 179 ----IAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRVEDI-----LKQGG--VVALVGPTGVGKTTTLAKLAAryAL 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 332 KQQGKKVLLAACDTFRAGAIQQLQVWGERDGVdvvagaersdPASVCFDAVKKAKA----EDYDILFVDTAGRLQNKVNL 407
Cdd:PRK05703 248 LYGKKKVALITLDTYRIGAVEQLKTYAKIMGI----------PVEVVYDPKELAKAleqlRDCDVILIDTAGRSQRDKRL 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 408 MNELEKIKrvitrEIPAAPHEVLLVLDATTGQNALNQA-KIFKQsTDVSGIVLTKLDGTARGGIVLAIRNELHLAVKYVG 486
Cdd:PRK05703 318 IEELKALI-----EFSGEPIDVYLVLSATTKYEDLKDIyKHFSR-LPLDGLIFTKLDETSSLGSILSLLIESGLPISYLT 391
|
330
....*....|....*...
gi 1655157926 487 LGEKV-TDLRPFNANDFV 503
Cdd:PRK05703 392 NGQRVpDDIKVANPEELV 409
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
238-399 |
9.60e-16 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 77.38 E-value: 9.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 238 FDELEDTLIESDVGYETAMRISDelrdevKLKNAKSKKDISSVIVEKLVDMYGEAGEGEDnsiylAAQGPTVILFVGVNG 317
Cdd:TIGR03499 136 RAKLYERLLEAGVSEELARELLE------KLPEDADAEDAWRWLREALEGMLPVKPEEDP-----ILEQGGVIALVGPTG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 318 AGKTTTIGKMAN--MYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDV-VAGaersDPasvcfDAVKKAKAE--DYDI 392
Cdd:TIGR03499 205 VGKTTTLAKLAArfALEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVkVAR----DP-----KELREALDRlrDKDL 275
|
....*..
gi 1655157926 393 LFVDTAG 399
Cdd:TIGR03499 276 ILIDTAG 282
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
309-506 |
4.18e-15 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 77.72 E-value: 4.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 309 VILFVGVNGAGKTTTIGKMANMYKQQ--GKKVLLAACDTFRAGAIQQLQVWGERDGVDVvagaERSDPASVCFDAVKKAK 386
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQhaPRDVALVTTDTQRVGGREQLHSYGRQLGIAV----HEADSAESLLDLLERLR 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 387 aeDYDILFVDTAGRLQNKVNLMNELEKIK--RVITReipaaphevLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDG 464
Cdd:PRK12727 428 --DYKLVLIDTAGMGQRDRALAAQLNWLRaaRQVTS---------LLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDE 496
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1655157926 465 TARGGIVLAIRNELHLAVKYVGLGEKV-TDLRPFNANDFVYGL 506
Cdd:PRK12727 497 TGRFGSALSVVVDHQMPITWVTDGQRVpDDLHRANAASLVLRL 539
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
240-491 |
8.29e-15 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 76.09 E-value: 8.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 240 ELEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKDISSVIVEKLVDMYGEAGEGEDNsiylaaQGPTVILFVGVNGAG 319
Cdd:PRK12723 113 KIEDILRENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTIKCSGSIIDN------LKKRVFILVGPTGVG 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 320 KTTTIGKMANMY----KQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVvagaersdpasVCFDAVKKAKAE-----DY 390
Cdd:PRK12723 187 KTTTIAKLAAIYginsDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV-----------KAIESFKDLKEEitqskDF 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 391 DILFVDTAGRL-QNKVNLMNELEKIKRVITREipaaphEVLLVLDATTgqNALNQAKIFKQST--DVSGIVLTKLDGTAR 467
Cdd:PRK12723 256 DLVLVDTIGKSpKDFMKLAEMKELLNACGRDA------EFHLAVSSTT--KTSDVKEIFHQFSpfSYKTVIFTKLDETTC 327
|
250 260
....*....|....*....|....
gi 1655157926 468 GGIVLAIRNELHLAVKYVGLGEKV 491
Cdd:PRK12723 328 VGNLISLIYEMRKEVSYVTDGQIV 351
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
307-437 |
2.63e-14 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 70.09 E-value: 2.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 307 PTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERsdpasvCFDAVKKAK 386
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELR------LRLALALAR 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1655157926 387 AEDYDILFVDTAGRLQNKVNLMNELEKIKRVItrEIPAAPHEVLLVLDATT 437
Cdd:smart00382 76 KLKPDVLILDEITSLLDAEQEALLLLLEELRL--LLLLKSEKNLTVILTTN 124
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
216-289 |
1.84e-12 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 62.57 E-value: 1.84e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1655157926 216 RKTFGDRINAFLANFRHVDEsFFDELEDTLIESDVGYETAMRISDELRDEVK---LKNAKSKKDISSVIVEKLVDMY 289
Cdd:smart00963 2 SKALGKLLGELFLTEKDDEE-LLEELEEALLEADVGVEVVKEIIERVKEKAKgevLKGLTPKQEVKKILKEELVKIL 77
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
309-498 |
1.01e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 66.91 E-value: 1.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 309 VILFVGVNGAGKTTTIGKMANMYK-QQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAErsdpasvcfdaVKKAK- 386
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFlHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD-----------IKKFKe 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 387 --AED-YDILFVDTAGRLQNKvnlMNELEKIKRVITREIPAAPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLD 463
Cdd:PRK12724 294 tlARDgSELILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLD 370
|
170 180 190
....*....|....*....|....*....|....*
gi 1655157926 464 GTARGGIVLAIRNELHLAVKYVGLGEKVtdlrPFN 498
Cdd:PRK12724 371 EADFLGSFLELADTYSKSFTYLSVGQEV----PFD 401
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
302-503 |
2.09e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 66.36 E-value: 2.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 302 LAAQGpTVILFVGVNGAGKTTTIGKMANMY--KQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDpasvcf 379
Cdd:PRK14723 181 LLAQG-GVLALVGPTGVGKTTTTAKLAARCvaREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD------ 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 380 daVKKAKAE--DYDILFVDTAGRLQNKVNLMNELEKIKRVitreipAAPHEVLLVLDATTGQNALNQ---AKIFKQSTDV 454
Cdd:PRK14723 254 --LRFALAAlgDKHLVLIDTVGMSQRDRNVSEQIAMLCGV------GRPVRRLLLLNAASHGDTLNEvvhAYRHGAGEDV 325
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1655157926 455 SGIVLTKLDGTARGGIVL--AIRNElhLAVKYVGLGEKV-TDLRPFNANDFV 503
Cdd:PRK14723 326 DGCIITKLDEATHLGPALdtVIRHR--LPVHYVSTGQKVpEHLELAQADELV 375
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
219-285 |
2.13e-11 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 59.40 E-value: 2.13e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1655157926 219 FGDRINAFLANFR---HVDESFFDE----LEDTLIESDVGYETAMRISDELRD-EVKLKNAKSKKDISSVIVEKL 285
Cdd:pfam02881 1 LGEKLSSLFKGLRgkgKIDEEDLEEalkeLEEALLEADVGVEVVKKIIERLREkAVGEKKLKPPQEVKKILKEEL 75
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
265-474 |
5.86e-11 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 64.32 E-value: 5.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 265 EVKLKNAK--SKKDISSVIVEKLVDMYGEAGEGEDNSIYLAAQGPTvilfvgvnGAGKTTTIGKMANMYKQQGKKVLLAA 342
Cdd:PRK11889 205 KVKFENATmiTEEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPT--------GVGKTTTLAKMAWQFHGKKKTVGFIT 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 343 CDTFRAGAIQQLQVWGERDGVDVVAgaeRSDPASVCfDAVKKAKAE-DYDILFVDTAGRLQNKVNLMNEL-EKIKRVitr 420
Cdd:PRK11889 277 TDHSRIGTVQQLQDYVKTIGFEVIA---VRDEAAMT-RALTYFKEEaRVDYILIDTAGKNYRASETVEEMiETMGQV--- 349
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1655157926 421 eipaAPHEVLLVLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTARGGIVLAI 474
Cdd:PRK11889 350 ----EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKI 399
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
309-493 |
1.24e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 63.20 E-value: 1.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 309 VILFVGVNGAGKTTTIGKMAN--MYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDPAsvcfdaVKKAK 386
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAArcVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 387 AEDYDILFVDTAGRLQNKVNLMNELEKIKRVITreipaaPHEVLLVLDATTGQNALNQA-KIFKQST--------DVSGI 457
Cdd:PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADT------PVQRLLLLNATSHGDTLNEVvQAYRSAAgqpkaalpDLAGC 286
|
170 180 190
....*....|....*....|....*....|....*.
gi 1655157926 458 VLTKLDGTARGGIVLAIRNELHLAVKYVGLGEKVTD 493
Cdd:PRK14722 287 ILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
306-496 |
1.99e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 62.83 E-value: 1.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 306 GPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGaerSDPASVCFDAVKKA 385
Cdd:PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAELEEAVQYMT 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 386 KAEDYDILFVDTAGRLQNKVNLMNELEKIKRVItreipaapHEVLLVLDATTGQNALNQAKIFKQSTD--VSGIVLTKLD 463
Cdd:PRK12726 282 YVNCVDHILIDTVGRNYLAEESVSEISAYTDVV--------HPDLTCFTFSSGMKSADVMTILPKLAEipIDGFIITKMD 353
|
170 180 190
....*....|....*....|....*....|....*
gi 1655157926 464 GTARGGIVLAIRNELHLAVKYVGLGEKVTD--LRP 496
Cdd:PRK12726 354 ETTRIGDLYTVMQETNLPVLYMTDGQNITEniFRP 388
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
272-474 |
2.67e-09 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 58.22 E-value: 2.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 272 KSKKDISSVIVEKLVDMYGEAGEGEDNSIYLAAQGPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAI 351
Cdd:PRK06731 40 KVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTV 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 352 QQLQVWGERDGVDVVAgaeRSDPASVCFDAVKKAKAEDYDILFVDTAGRLQNKVnlmnelEKIKRVITREIPAAPHEVLL 431
Cdd:PRK06731 120 QQLQDYVKTIGFEVIA---VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRAS------ETVEEMIETMGQVEPDYICL 190
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1655157926 432 VLDATTGQNALNQAKIFKQSTDVSGIVLTKLDGTARGGIVLAI 474
Cdd:PRK06731 191 TLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKI 233
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
309-508 |
4.76e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 58.42 E-value: 4.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 309 VILFVGVNGAGKTTTIGKMAN--MYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAGAERSDpASVCFDAVKKAK 386
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAAraVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIAD-LQLMLHELRGKH 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 387 aedydILFVDTAGRLQNKVNLMNEL-------EKIKRvitreipaaphevLLVLDATTGQNALNQAKIFKQSTDVSGIVL 459
Cdd:PRK14721 272 -----MVLIDTVGMSQRDQMLAEQIamlsqcgTQVKH-------------LLLLNATSSGDTLDEVISAYQGHGIHGCII 333
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1655157926 460 TKLDGTARGGIVL--AIRNELHLavKYVGLGEKV-TDLRPFNANDFVYGLFK 508
Cdd:PRK14721 334 TKVDEAASLGIALdaVIRRKLVL--HYVTNGQKVpEDLHEANSRYLLHRIFK 383
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
309-344 |
2.41e-03 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 37.80 E-value: 2.41e-03
10 20 30
....*....|....*....|....*....|....*..
gi 1655157926 309 VILFVG-VNGAGKTTTIGKMANMYKQQGKKVLLAACD 344
Cdd:cd01983 2 VIAVTGgKGGVGKTTLAAALAVALAAKGYKVLLIDLD 38
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
270-342 |
5.53e-03 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 39.19 E-value: 5.53e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1655157926 270 NAKSKKDISSVIVEKLVDMYGEAGEGEDNS-----IYLAAQGPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAA 342
Cdd:COG0507 98 RRLARPALDEADVEAALAALEPRAGITLSDeqreaVALALTTRRVSVLTGGAGTGKTTTLRALLAALEALGLRVALAA 175
|
|
| BY-kinase |
cd05387 |
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ... |
302-368 |
7.29e-03 |
|
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.
Pssm-ID: 349772 [Multi-domain] Cd Length: 190 Bit Score: 37.55 E-value: 7.29e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1655157926 302 LAAQGPTVILFVGVN-GAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGERDGVDVVAG 368
Cdd:cd05387 14 GSDAGPKVIAVTSASpGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLSG 81
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
56-206 |
8.46e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 38.87 E-value: 8.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1655157926 56 QATSATPTSAVQTSTASASASLAESAPAVSATSAAISEASAESLASSSTVDASAAGIEADHSaqsEAADQDQSEAPLTAS 135
Cdd:PRK10811 851 QDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVV---ETTHPEVIAAPVTEQ 927
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1655157926 136 EAVARSLAAIRAQAASADAEPVAASTAATTETDtaaekQPAATSETGVVEAPVESTAPASEGASAEPTEAE 206
Cdd:PRK10811 928 PQVITESDVAVAQEVAEHAEPVVEPQDETADIE-----EAAETAEVVVAEPEVVAQPAAPVVAEVAAEVET 993
|
|
| |
