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Conserved domains on  [gi|1779109084|ref|WP_155162390|]
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GspH/FimT family pseudopilin [Sansalvadorimonas verongulae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
6-73 1.01e-21

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


:

Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 82.97  E-value: 1.01e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1779109084   6 RGWRASVGFTLVELMVVMAVLAILAGVVTPSFTDMVVRNGVSTHTNKMISLLRYARSEAISRQNSVVL 73
Cdd:COG4970     3 RLRRRQRGFTLIELLVVLAILAILAAIAVPSFSSLIARQRLRAAANELAAALRLARSEAIRRGQPVTL 70
GspH pfam12019
Type II transport protein GspH; GspH is involved in bacterial type II export systems. Like all ...
 49-153 5.22e-12

Type II transport protein GspH; GspH is involved in bacterial type II export systems. Like all pilins, GspH has an N terminus alpha helix. This helix is followed by nine beta strands forming two beta sheets, one of five antiparallel strands and one of four antiparallel strands. GspH is a minor pseudopilin; it is expressed much less than other pseudopilins in the type II secretion pilus (major pilins). The function and localization of minor pseudo-pilins are still to be fully unraveled. It has been suggested that some minor pseudopilins may assemble either into the base or the tip of pili, or both. They function as initiators or regulators of pilus biogenesis and dynamics, and/or as adaptors between various pseudopilin component and other members of the T2SS.


:

Pssm-ID: 463433  Cd Length: 108  Bit Score: 59.14  E-value: 5.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109084  49 HTNKMISLLRYARSEAISRQNSVVLCNGNTDGSACGNSTDIVLVVDEADGTVLLVSPPIPRQVVTQ---PANLNIRFEPN 125
Cdd:pfam12019   1 AANRLAAALQLARSEAIKRGRPVTVCPSDWSGGWIVFVDANANGDLDGGEDLLRVGAALAGGDVLVtasSASPQITFNPD 80

                          90       100
                  ....*....|....*....|....*...
gi 1779109084 126 GSTSNSGEINFQNKGGDSIATLSVTRAG 153
Cdd:pfam12019  81 GRAATPGTLTLCSGGSGRSRRVVVSASG 108
 
Name Accession Description Interval E-value
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
6-73 1.01e-21

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 82.97  E-value: 1.01e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1779109084   6 RGWRASVGFTLVELMVVMAVLAILAGVVTPSFTDMVVRNGVSTHTNKMISLLRYARSEAISRQNSVVL 73
Cdd:COG4970     3 RLRRRQRGFTLIELLVVLAILAILAAIAVPSFSSLIARQRLRAAANELAAALRLARSEAIRRGQPVTL 70
GspH pfam12019
Type II transport protein GspH; GspH is involved in bacterial type II export systems. Like all ...
 49-153 5.22e-12

Type II transport protein GspH; GspH is involved in bacterial type II export systems. Like all pilins, GspH has an N terminus alpha helix. This helix is followed by nine beta strands forming two beta sheets, one of five antiparallel strands and one of four antiparallel strands. GspH is a minor pseudopilin; it is expressed much less than other pseudopilins in the type II secretion pilus (major pilins). The function and localization of minor pseudo-pilins are still to be fully unraveled. It has been suggested that some minor pseudopilins may assemble either into the base or the tip of pili, or both. They function as initiators or regulators of pilus biogenesis and dynamics, and/or as adaptors between various pseudopilin component and other members of the T2SS.


Pssm-ID: 463433  Cd Length: 108  Bit Score: 59.14  E-value: 5.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109084  49 HTNKMISLLRYARSEAISRQNSVVLCNGNTDGSACGNSTDIVLVVDEADGTVLLVSPPIPRQVVTQ---PANLNIRFEPN 125
Cdd:pfam12019   1 AANRLAAALQLARSEAIKRGRPVTVCPSDWSGGWIVFVDANANGDLDGGEDLLRVGAALAGGDVLVtasSASPQITFNPD 80

                          90       100
                  ....*....|....*....|....*...
gi 1779109084 126 GSTSNSGEINFQNKGGDSIATLSVTRAG 153
Cdd:pfam12019  81 GRAATPGTLTLCSGGSGRSRRVVVSASG 108
typeII_sec_gspH TIGR01708
type II secretion system protein H; This model represents GspH, protein H of the main terminal ...
 9-153 1.07e-06

type II secretion system protein H; This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130769 [Multi-domain]  Cd Length: 143  Bit Score: 45.63  E-value: 1.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109084   9 RASVGFTLVELMVVMAVLAILAGVVTPSFTDMVVRNGVSTHTNKMISLLRYARSEAISRqNSVVLCNGNTDGSACGNSTD 88
Cdd:TIGR01708   1 HRQSGFTLIELLVVLAIMGLVAAAAALSLVSHYGTKSLDQVAGRLAARLRLAQTSARAT-GRPVLLRLGSRGIRFGERAS 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1779109084  89 IVLVVDEADGTVLlvsPPIPRQVVTQPANLNIRFEPNGSTSnSGEINFQNKGGDsiATLSVTRAG 153
Cdd:TIGR01708  80 LALPVDEVKMTDW---TGQETVVADRQTVLTVLFLPDGRAS-PMDMTLQRKGRS--VTVAVNWLG 138
PRK10574 PRK10574
putative major pilin subunit; Provisional
 13-40 1.14e-05

putative major pilin subunit; Provisional


Pssm-ID: 236718 [Multi-domain]  Cd Length: 146  Bit Score: 42.71  E-value: 1.14e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1779109084  13 GFTLVELMVVMAVLAILAGVVTPSF---------TDM 40
Cdd:PRK10574    6 GFTLIELMVVIAIIAILSAIGIPAYqnylqkaalTDM 42
TIGR02596 TIGR02596
Verru_Chthon cassette protein D; This model describes a nearly twenty member protein family in ...
 14-71 1.74e-05

Verru_Chthon cassette protein D; This model describes a nearly twenty member protein family in Verrucomicrobium spinosum and a somewhat smaller paralogous family in Chthoniobacter flavus. All members share a type IV pilin-like N-terminal leader sequence (TIGR02532). These proteins occur in the four-gene Verru_Chthon cassette, in which two other genes likewise encode a cleavage/methylation domain. Most of these cassettes occur next to an unusually large PEP-CTERM protein with an autotransporter domain. [Cell envelope, Surface structures]


Pssm-ID: 274219 [Multi-domain]  Cd Length: 195  Bit Score: 42.85  E-value: 1.74e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1779109084  14 FTLVELMVVMAVLAILAGVVTPSFTDMVVRNGVSTHTNKMISLLRYARSEAISRQNSV 71
Cdd:TIGR02596   1 FTLVELLVVIAIAALLMALSTPVVNQVLAAQQLGSSATRLANELAAAAQLAVRENRPV 58
N_methyl pfam07963
Prokaryotic N-terminal methylation motif; This short motif directs methylation of the ...
 13-34 4.85e-05

Prokaryotic N-terminal methylation motif; This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N-terminus of pilins and other proteins involved in secretion, see pfam00114, pfam05946, pfam02501 and pfam07596.


Pssm-ID: 429756 [Multi-domain]  Cd Length: 27  Bit Score: 38.51  E-value: 4.85e-05
                          10        20
                  ....*....|....*....|..
gi 1779109084  13 GFTLVELMVVMAVLAILAGVVT 34
Cdd:pfam07963   6 GFTLIELLVALAILAILLAAAL 27
ComGD NF040982
competence type IV pilus minor pilin ComGD;
13-161 5.60e-05

competence type IV pilus minor pilin ComGD;


Pssm-ID: 468912 [Multi-domain]  Cd Length: 140  Bit Score: 40.69  E-value: 5.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109084  13 GFTLVE-LMVVMAVLAILAGVVTPSFTdmvvrNGVSTHTNKM-----ISLLRYARSEAISRQNSVVLcngntdgsACGNS 86
Cdd:NF040982    3 GFTLLEsLLVLLIVSSLLLLTLSLSIP-----QTYEQVEEKLffeqfENDLLYAQQYAIASQQSTTI--------TFSPD 69

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1779109084  87 TDIVLVVDEADGTVLLVSPPIPRQvVTQPANLNIRFEPNGSTsNSGEINFQNKGGDSIATlsvtragLVMNMGEG 161
Cdd:NF040982   70 EIQYQFQEGGNTSNRPYPLKIPIS-ITVTKPNTITFNKNGGN-NSLKGTFYIKGKKQTYT-------YQFQLGSG 135
T4P_ComGE NF041013
competence type IV pilus minor pilin ComGE;
13-60 1.36e-03

competence type IV pilus minor pilin ComGE;


Pssm-ID: 468942 [Multi-domain]  Cd Length: 83  Bit Score: 36.02  E-value: 1.36e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1779109084  13 GFTLVELMVVMAVLAILAGVVTPSFTDMVVRNGVSTHTNKMISLLRYA 60
Cdd:NF041013    5 GFILLESLVALALLALIVSLLLPSLTQIQKEREEIKQKEEALQVLYEA 52
 
Name Accession Description Interval E-value
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
6-73 1.01e-21

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 82.97  E-value: 1.01e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1779109084   6 RGWRASVGFTLVELMVVMAVLAILAGVVTPSFTDMVVRNGVSTHTNKMISLLRYARSEAISRQNSVVL 73
Cdd:COG4970     3 RLRRRQRGFTLIELLVVLAILAILAAIAVPSFSSLIARQRLRAAANELAAALRLARSEAIRRGQPVTL 70
PilA COG4969
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
13-100 1.81e-13

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 63.57  E-value: 1.81e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109084  13 GFTLVELMVVMAVLAILAGVVTPSFTDMVVRNGVSthtnKMISLLRYARS---EAISRQNSVVLCNGNTDGSACGNSTDI 89
Cdd:COG4969     7 GFTLIELMIVVAIIGILAAIAIPAYQDYVARARVS----EALALASPLKTaveECALENGSLPNCNAGDNGLPATIATKY 82

                          90
                  ....*....|.
gi 1779109084  90 VLVVDEADGTV 100
Cdd:COG4969    83 VSSVSVDNGVI 93
GspH pfam12019
Type II transport protein GspH; GspH is involved in bacterial type II export systems. Like all ...
 49-153 5.22e-12

Type II transport protein GspH; GspH is involved in bacterial type II export systems. Like all pilins, GspH has an N terminus alpha helix. This helix is followed by nine beta strands forming two beta sheets, one of five antiparallel strands and one of four antiparallel strands. GspH is a minor pseudopilin; it is expressed much less than other pseudopilins in the type II secretion pilus (major pilins). The function and localization of minor pseudo-pilins are still to be fully unraveled. It has been suggested that some minor pseudopilins may assemble either into the base or the tip of pili, or both. They function as initiators or regulators of pilus biogenesis and dynamics, and/or as adaptors between various pseudopilin component and other members of the T2SS.


Pssm-ID: 463433  Cd Length: 108  Bit Score: 59.14  E-value: 5.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109084  49 HTNKMISLLRYARSEAISRQNSVVLCNGNTDGSACGNSTDIVLVVDEADGTVLLVSPPIPRQVVTQ---PANLNIRFEPN 125
Cdd:pfam12019   1 AANRLAAALQLARSEAIKRGRPVTVCPSDWSGGWIVFVDANANGDLDGGEDLLRVGAALAGGDVLVtasSASPQITFNPD 80

                          90       100
                  ....*....|....*....|....*...
gi 1779109084 126 GSTSNSGEINFQNKGGDSIATLSVTRAG 153
Cdd:pfam12019  81 GRAATPGTLTLCSGGSGRSRRVVVSASG 108
PilE COG4968
Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];
1-43 1.06e-11

Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];


Pssm-ID: 443994 [Multi-domain]  Cd Length: 124  Bit Score: 58.55  E-value: 1.06e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1779109084   1 MKSGFRgwRASVGFTLVELMVVMAVLAILAGVVTPSFTDMVVR 43
Cdd:COG4968     1 MKKRMR--RRQRGFTLIELMIVVAIIGILAAIAIPSYQDYVER 41
PulG COG2165
Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, ...
 13-53 1.29e-08

Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 441768 [Multi-domain]  Cd Length: 99  Bit Score: 49.91  E-value: 1.29e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1779109084  13 GFTLVELMVVMAVLAILAGVVTPSFTDMVVRNGVSTHTNKM 53
Cdd:COG2165    12 GFTLIELLVVIAIIGILAALALPALQGARERARRAELRSNL 52
typeII_sec_gspH TIGR01708
type II secretion system protein H; This model represents GspH, protein H of the main terminal ...
 9-153 1.07e-06

type II secretion system protein H; This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130769 [Multi-domain]  Cd Length: 143  Bit Score: 45.63  E-value: 1.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109084   9 RASVGFTLVELMVVMAVLAILAGVVTPSFTDMVVRNGVSTHTNKMISLLRYARSEAISRqNSVVLCNGNTDGSACGNSTD 88
Cdd:TIGR01708   1 HRQSGFTLIELLVVLAIMGLVAAAAALSLVSHYGTKSLDQVAGRLAARLRLAQTSARAT-GRPVLLRLGSRGIRFGERAS 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1779109084  89 IVLVVDEADGTVLlvsPPIPRQVVTQPANLNIRFEPNGSTSnSGEINFQNKGGDsiATLSVTRAG 153
Cdd:TIGR01708  80 LALPVDEVKMTDW---TGQETVVADRQTVLTVLFLPDGRAS-PMDMTLQRKGRS--VTVAVNWLG 138
ComGC COG4537
Competence protein ComGC [Mobilome: prophages, transposons];
1-40 2.20e-06

Competence protein ComGC [Mobilome: prophages, transposons];


Pssm-ID: 443603 [Multi-domain]  Cd Length: 108  Bit Score: 44.15  E-value: 2.20e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1779109084   1 MKSGFRGWRASVGFTLVELMVVMAVLAILAGVVTPSFTDM 40
Cdd:COG4537     1 MKKKKRKLKKEKGFTLIEMLIVLLIISILLLIAVPNLTKQ 40
PRK10574 PRK10574
putative major pilin subunit; Provisional
 13-40 1.14e-05

putative major pilin subunit; Provisional


Pssm-ID: 236718 [Multi-domain]  Cd Length: 146  Bit Score: 42.71  E-value: 1.14e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1779109084  13 GFTLVELMVVMAVLAILAGVVTPSF---------TDM 40
Cdd:PRK10574    6 GFTLIELMVVIAIIAILSAIGIPAYqnylqkaalTDM 42
TIGR02596 TIGR02596
Verru_Chthon cassette protein D; This model describes a nearly twenty member protein family in ...
 14-71 1.74e-05

Verru_Chthon cassette protein D; This model describes a nearly twenty member protein family in Verrucomicrobium spinosum and a somewhat smaller paralogous family in Chthoniobacter flavus. All members share a type IV pilin-like N-terminal leader sequence (TIGR02532). These proteins occur in the four-gene Verru_Chthon cassette, in which two other genes likewise encode a cleavage/methylation domain. Most of these cassettes occur next to an unusually large PEP-CTERM protein with an autotransporter domain. [Cell envelope, Surface structures]


Pssm-ID: 274219 [Multi-domain]  Cd Length: 195  Bit Score: 42.85  E-value: 1.74e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1779109084  14 FTLVELMVVMAVLAILAGVVTPSFTDMVVRNGVSTHTNKMISLLRYARSEAISRQNSV 71
Cdd:TIGR02596   1 FTLVELLVVIAIAALLMALSTPVVNQVLAAQQLGSSATRLANELAAAAQLAVRENRPV 58
typeII_sec_gspG TIGR01710
type II secretion system protein G; This model represents GspG, protein G of the main terminal ...
 13-38 2.36e-05

type II secretion system protein G; This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130771 [Multi-domain]  Cd Length: 134  Bit Score: 41.64  E-value: 2.36e-05
                          10        20
                  ....*....|....*....|....*.
gi 1779109084  13 GFTLVELMVVMAVLAILAGVVTPSFT 38
Cdd:TIGR01710   2 GFTLLEIMVVLVILGLLAALVAPKLF 27
N_methyl pfam07963
Prokaryotic N-terminal methylation motif; This short motif directs methylation of the ...
 13-34 4.85e-05

Prokaryotic N-terminal methylation motif; This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N-terminus of pilins and other proteins involved in secretion, see pfam00114, pfam05946, pfam02501 and pfam07596.


Pssm-ID: 429756 [Multi-domain]  Cd Length: 27  Bit Score: 38.51  E-value: 4.85e-05
                          10        20
                  ....*....|....*....|..
gi 1779109084  13 GFTLVELMVVMAVLAILAGVVT 34
Cdd:pfam07963   6 GFTLIELLVALAILAILLAAAL 27
PulJ COG4795
Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and ...
 9-44 5.30e-05

Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443823 [Multi-domain]  Cd Length: 118  Bit Score: 40.38  E-value: 5.30e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1779109084   9 RASVGFTLVELMVVMAVLAILAGVVTpSFTDMVVRN 44
Cdd:COG4795     6 RRQRGFTLLELLVALAIFALLLLAAY-RGLDSVLRS 40
ComGD NF040982
competence type IV pilus minor pilin ComGD;
13-161 5.60e-05

competence type IV pilus minor pilin ComGD;


Pssm-ID: 468912 [Multi-domain]  Cd Length: 140  Bit Score: 40.69  E-value: 5.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109084  13 GFTLVE-LMVVMAVLAILAGVVTPSFTdmvvrNGVSTHTNKM-----ISLLRYARSEAISRQNSVVLcngntdgsACGNS 86
Cdd:NF040982    3 GFTLLEsLLVLLIVSSLLLLTLSLSIP-----QTYEQVEEKLffeqfENDLLYAQQYAIASQQSTTI--------TFSPD 69

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1779109084  87 TDIVLVVDEADGTVLLVSPPIPRQvVTQPANLNIRFEPNGSTsNSGEINFQNKGGDSIATlsvtragLVMNMGEG 161
Cdd:NF040982   70 EIQYQFQEGGNTSNRPYPLKIPIS-ITVTKPNTITFNKNGGN-NSLKGTFYIKGKKQTYT-------YQFQLGSG 135
IV_pilin_GFxxxE TIGR02532
prepilin-type N-terminal cleavage/methylation domain; This model describes many but not all ...
 13-34 2.33e-04

prepilin-type N-terminal cleavage/methylation domain; This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274182 [Multi-domain]  Cd Length: 24  Bit Score: 36.51  E-value: 2.33e-04
                          10        20
                  ....*....|....*....|..
gi 1779109084  13 GFTLVELMVVMAVLAILAGVVT 34
Cdd:TIGR02532   3 GFTLIELLVVLAILGILALIAL 24
T4P_ComGE NF041013
competence type IV pilus minor pilin ComGE;
13-60 1.36e-03

competence type IV pilus minor pilin ComGE;


Pssm-ID: 468942 [Multi-domain]  Cd Length: 83  Bit Score: 36.02  E-value: 1.36e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1779109084  13 GFTLVELMVVMAVLAILAGVVTPSFTDMVVRNGVSTHTNKMISLLRYA 60
Cdd:NF041013    5 GFILLESLVALALLALIVSLLLPSLTQIQKEREEIKQKEEALQVLYEA 52
PilW COG4966
Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];
9-60 2.41e-03

Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];


Pssm-ID: 443992 [Multi-domain]  Cd Length: 158  Bit Score: 36.70  E-value: 2.41e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1779109084   9 RASVGFTLVELMVVMAVLAILAGVVTPSFTDMVVRNGVSTHTNKMISLLRYA 60
Cdd:COG4966     2 RRQRGFTLVELMVALAIGLIVLAAVLQLFLSSRRSYRTQEALARLQENGRFA 53
ComGF COG4940
Competence protein ComGF [Mobilome: prophages, transposons];
12-79 9.03e-03

Competence protein ComGF [Mobilome: prophages, transposons];


Pssm-ID: 443967 [Multi-domain]  Cd Length: 153  Bit Score: 34.99  E-value: 9.03e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1779109084  12 VGFTLVELMVVMAVLAILAGVVTPSFTDMVVRNGVST--HTNKMISL-------LRYARSEAIsRQNSVVLCNGNTD 79
Cdd:COG4940    16 KGFTLLEKLAALMIIAYILAVLELLLKLLLKLNQSLDagEQIEWELFieqlifeLLEAKLIEV-RSNRLVLTDIKPP 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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