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Conserved domains on  [gi|1801176641|ref|WP_160838858|]
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MULTISPECIES: tripartite tricarboxylate transporter substrate binding protein [Aeromonas]

Protein Classification

tripartite tricarboxylate transporter substrate binding protein( domain architecture ID 10161503)

tripartite tricarboxylate transporter (TTT) substrate binding protein belonging to the Bug (Bordetella uptake gene) protein family, a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, mainly in proteobacteria

Gene Ontology:  GO:0042597
PubMed:  14499931
TCDB:  2.A.80

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PBP2_Bug_TTT cd07012
Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains ...
28-316 1.40e-70

Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold; The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.


:

Pssm-ID: 270234  Cd Length: 291  Bit Score: 220.80  E-value: 1.40e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641  28 VHFLIPGGAGGGWDTTARGTGEVLAKSgLVKTVSYQNMSTGGGAKAIAHLIetSAQSDK-TLMVNSTPIIV--KSLSKEL 104
Cdd:cd07012     6 IRLVVPFPAGGGTDVVARLLAEALSKE-LGQPVVVENKPGAGGAIGAAAVA--RAAPDGyTLLLGSSGTLTinPLLYKKL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 105 PQSFRDLTPVAAIIADYQALAVKADSPYQNWAQLLAAYEENPAKVKIAGGSArGSLDHLVAALTFKNAGAdasKLRYVAY 184
Cdd:cd07012    83 YDPLKDFTPVALLATDPLVLVVNADSPYKTLAELVAAAKANPGKLTYGSAGA-GSSSHLAGELLAQAAGI---KLTHVPY 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 185 DAGGSAMAAVLAGETQAISTGFGEAMEAVKSGQMRILGVTSDKRLPGAEQIPTFSEQNNPTV-FANWRGYFASPTISPEK 263
Cdd:cd07012   159 KGGAPALTDLLGGQVDAAFDSLSEALPQIKAGKLRALAVTSPERLPLLPDVPTLAEQGLPDFeVSSWRGLFAPAGTPPEV 238
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1801176641 264 SAEFAALLKQMYDKPEWEVVRSRNSWTNLYQSGPEFTAFLDGQEQQIGGLMRE 316
Cdd:cd07012   239 VAKLNAALAKALADPEVRERLAALGLEPVYLTPAEFAAFLRAETARWGKLIKA 291
 
Name Accession Description Interval E-value
PBP2_Bug_TTT cd07012
Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains ...
28-316 1.40e-70

Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold; The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.


Pssm-ID: 270234  Cd Length: 291  Bit Score: 220.80  E-value: 1.40e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641  28 VHFLIPGGAGGGWDTTARGTGEVLAKSgLVKTVSYQNMSTGGGAKAIAHLIetSAQSDK-TLMVNSTPIIV--KSLSKEL 104
Cdd:cd07012     6 IRLVVPFPAGGGTDVVARLLAEALSKE-LGQPVVVENKPGAGGAIGAAAVA--RAAPDGyTLLLGSSGTLTinPLLYKKL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 105 PQSFRDLTPVAAIIADYQALAVKADSPYQNWAQLLAAYEENPAKVKIAGGSArGSLDHLVAALTFKNAGAdasKLRYVAY 184
Cdd:cd07012    83 YDPLKDFTPVALLATDPLVLVVNADSPYKTLAELVAAAKANPGKLTYGSAGA-GSSSHLAGELLAQAAGI---KLTHVPY 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 185 DAGGSAMAAVLAGETQAISTGFGEAMEAVKSGQMRILGVTSDKRLPGAEQIPTFSEQNNPTV-FANWRGYFASPTISPEK 263
Cdd:cd07012   159 KGGAPALTDLLGGQVDAAFDSLSEALPQIKAGKLRALAVTSPERLPLLPDVPTLAEQGLPDFeVSSWRGLFAPAGTPPEV 238
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1801176641 264 SAEFAALLKQMYDKPEWEVVRSRNSWTNLYQSGPEFTAFLDGQEQQIGGLMRE 316
Cdd:cd07012   239 VAKLNAALAKALADPEVRERLAALGLEPVYLTPAEFAAFLRAETARWGKLIKA 291
TctC COG3181
Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC [Energy ...
5-319 1.96e-69

Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC [Energy production and conversion];


Pssm-ID: 442414  Cd Length: 324  Bit Score: 218.86  E-value: 1.96e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641   5 TFKRTLIGSL----LALSVGAHAQIN----EVHFLIPGGAGGGWDTTARGTGEVLAKSgLVKTVSYQNMSTGGGAKAIAH 76
Cdd:COG3181     3 TTRRALLALAaalaLALAAAAAAAAAypsrPIRLIVPFAAGGGTDIVARLLAEKLSKA-LGQPVVVENRPGAGGTIGAAA 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641  77 LietsAQSDK---TLMVNSTPIIV--KSLSKELP-QSFRDLTPVAAIIADYQALAVKADSPYQNWAQLLAAYEENPAKVK 150
Cdd:COG3181    82 V----ARAAPdgyTLLLGSSGTLAinPALYKKLPyDPLKDFTPVALLATDPLVLVVNPDSPAKTLAELIAAAKANPGKLN 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 151 IAGGSArGSLDHLVAALTFKNAGADaskLRYVAYDAGGSAMAAVLAGETQAISTGFGEAMEAVKSGQMRILGVTSDKRLP 230
Cdd:COG3181   158 YGSSGV-GSSDHLAGELFKKAAGID---MTHVPYKGGGPALTDLLGGQVDAMFDSLSEALPQIKAGKLRALAVTSPERSP 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 231 GAEQIPTFSEQNNPTV-FANWRGYFASPTISPEKSAEFAALLKQMYDKPEWEVVRSRNSWTNLYQSGPEFTAFLDGQEQQ 309
Cdd:COG3181   234 ALPDVPTLAEAGLPGFeASSWRGLFAPAGTPPAVVAKLNAALAKALADPEVRERLAALGLEPVGSTPEEFAAFIAAEIAR 313
                         330
                  ....*....|
gi 1801176641 310 IGGLMRELGF 319
Cdd:COG3181   314 WGEVIKAAGI 323
TctC pfam03401
Tripartite tricarboxylate transporter family receptor; These probable extra-cytoplasmic solute ...
44-318 1.20e-19

Tripartite tricarboxylate transporter family receptor; These probable extra-cytoplasmic solute receptors are strongly overrepresented in several beta-proteobacteria. This family, formerly known as Bug - Bordetella uptake gene (bug) product - is a family of bacterial tripartite tricarboxylate receptors of the extracytoplasmic solute binding receptor-dependent transporter group of families, distinct from the ABC and TRAP-T families. The TctABC system has been characterized in S. typhimurium, and TctC is the extracytoplasmic tricarboxylate-binding receptor which binds the transporters TctA and TctB, two integral membrane proteins. Complete three-component systems are found only in bacteria.


Pssm-ID: 397461  Cd Length: 274  Bit Score: 86.76  E-value: 1.20e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641  44 ARGTGEVLAKSgLVKTVSYQNMSTGGGAKAiAHLIETSAQSDKTLMVNSTPIIV-KSLSKELP-QSFRDLTPVAAIIADY 121
Cdd:pfam03401   2 ARQAADGMSEK-LGQPVVVENKAGAGGIIG-TQMVAKAAPDGYTILLVSMSVAVaPHFYPKLPyDSVRDLNPISLLATYP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 122 QALAVKADSPYQNWAQLLAAYEENPAKVKIaGGSARGSLDHLVAALTFKNAGAdasKLRYVAYDAGGSAMAAVLAGETQA 201
Cdd:pfam03401  80 FVLVVPADSPFKTLTELIAYAKANPGKLSY-ASPGIGTSNHLAMELLASKAGV---QLSHIPYKGSSPAVQDLLAGHVDS 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 202 ISTGFGEAMEAVKSGQMRILGVTSDKRLPGAEQIPTFSEQNNP-TVFANWRGYFASPTISPEKSAEFAALLKQMYDKPEW 280
Cdd:pfam03401 156 MIASLPSWLPYIEAGKLRALGVTSEDRSARLPDVPTVAESGYKgFEVTSWFGLFAPKGTPPAVVQKLHDAFKKAMDAPAV 235
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1801176641 281 EVVRSRNSWTNLYQSGPEFTAFLDGQEQQIGGLMRELG 318
Cdd:pfam03401 236 VEALANFGMEPYYGNPQQLADFIQDEVKRWGALIEELG 273
 
Name Accession Description Interval E-value
PBP2_Bug_TTT cd07012
Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains ...
28-316 1.40e-70

Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold; The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.


Pssm-ID: 270234  Cd Length: 291  Bit Score: 220.80  E-value: 1.40e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641  28 VHFLIPGGAGGGWDTTARGTGEVLAKSgLVKTVSYQNMSTGGGAKAIAHLIetSAQSDK-TLMVNSTPIIV--KSLSKEL 104
Cdd:cd07012     6 IRLVVPFPAGGGTDVVARLLAEALSKE-LGQPVVVENKPGAGGAIGAAAVA--RAAPDGyTLLLGSSGTLTinPLLYKKL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 105 PQSFRDLTPVAAIIADYQALAVKADSPYQNWAQLLAAYEENPAKVKIAGGSArGSLDHLVAALTFKNAGAdasKLRYVAY 184
Cdd:cd07012    83 YDPLKDFTPVALLATDPLVLVVNADSPYKTLAELVAAAKANPGKLTYGSAGA-GSSSHLAGELLAQAAGI---KLTHVPY 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 185 DAGGSAMAAVLAGETQAISTGFGEAMEAVKSGQMRILGVTSDKRLPGAEQIPTFSEQNNPTV-FANWRGYFASPTISPEK 263
Cdd:cd07012   159 KGGAPALTDLLGGQVDAAFDSLSEALPQIKAGKLRALAVTSPERLPLLPDVPTLAEQGLPDFeVSSWRGLFAPAGTPPEV 238
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1801176641 264 SAEFAALLKQMYDKPEWEVVRSRNSWTNLYQSGPEFTAFLDGQEQQIGGLMRE 316
Cdd:cd07012   239 VAKLNAALAKALADPEVRERLAALGLEPVYLTPAEFAAFLRAETARWGKLIKA 291
TctC COG3181
Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC [Energy ...
5-319 1.96e-69

Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC [Energy production and conversion];


Pssm-ID: 442414  Cd Length: 324  Bit Score: 218.86  E-value: 1.96e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641   5 TFKRTLIGSL----LALSVGAHAQIN----EVHFLIPGGAGGGWDTTARGTGEVLAKSgLVKTVSYQNMSTGGGAKAIAH 76
Cdd:COG3181     3 TTRRALLALAaalaLALAAAAAAAAAypsrPIRLIVPFAAGGGTDIVARLLAEKLSKA-LGQPVVVENRPGAGGTIGAAA 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641  77 LietsAQSDK---TLMVNSTPIIV--KSLSKELP-QSFRDLTPVAAIIADYQALAVKADSPYQNWAQLLAAYEENPAKVK 150
Cdd:COG3181    82 V----ARAAPdgyTLLLGSSGTLAinPALYKKLPyDPLKDFTPVALLATDPLVLVVNPDSPAKTLAELIAAAKANPGKLN 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 151 IAGGSArGSLDHLVAALTFKNAGADaskLRYVAYDAGGSAMAAVLAGETQAISTGFGEAMEAVKSGQMRILGVTSDKRLP 230
Cdd:COG3181   158 YGSSGV-GSSDHLAGELFKKAAGID---MTHVPYKGGGPALTDLLGGQVDAMFDSLSEALPQIKAGKLRALAVTSPERSP 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 231 GAEQIPTFSEQNNPTV-FANWRGYFASPTISPEKSAEFAALLKQMYDKPEWEVVRSRNSWTNLYQSGPEFTAFLDGQEQQ 309
Cdd:COG3181   234 ALPDVPTLAEAGLPGFeASSWRGLFAPAGTPPAVVAKLNAALAKALADPEVRERLAALGLEPVGSTPEEFAAFIAAEIAR 313
                         330
                  ....*....|
gi 1801176641 310 IGGLMRELGF 319
Cdd:COG3181   314 WGEVIKAAGI 323
PBP2_Bug27 cd13578
Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the ...
28-316 1.06e-28

Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold; Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.


Pssm-ID: 270296  Cd Length: 291  Bit Score: 111.83  E-value: 1.06e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641  28 VHFLIPGGAGGGWDTTARGTGEVLAKSgLVKTVSYQNMSTGGGAKAIAHLIETSAQSDKTLMVNSTPIIVKSLSKELP-Q 106
Cdd:cd13578     6 IRLVVPFAPGGGTDIVARLLAQKLSEK-LGQPVVVENRPGAGGNIGTDAVAKAAPDGYTLLLASSSHAINPALYPKLPyD 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 107 SFRDLTPVAAIIADYQALAVKADSPYQNWAQLLAAYEENPAKVKIAGGSArGSLDHLVAALTFKNAGADaskLRYVAYDA 186
Cdd:cd13578    85 PVKDFAPVSLIASSPLVLVVNPSSPAKTLAELIAAAKANPGKLNYASSGN-GSSPHLAGELFKSAAGID---MVHVPYKG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 187 GGSAMAAVLAGETQAISTGFGEAMEAVKSGQMRILGVTSDKRLPGAEQIPTFSEQNNPTVFAN-WRGYFASPTISPEKSA 265
Cdd:cd13578   161 SGPALTDLLGGQVDLMFDSLPSALPHVKAGKLRALAVTSAKRSPLLPDVPTVAEAGLPGFEVSsWYGLFAPAGTPAAIVA 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1801176641 266 EFAALLKQMYDKPEwevVRSR---NSWTNLYQSGPEFTAFLDGQEQQIGGLMRE 316
Cdd:cd13578   241 RLNAAVNKALADPD---VRARlaaQGVEPVGSTPAEFGAFVAAEIARWAKVVKE 291
PBP2_Bug_NagM cd13579
Uncharacterized NagM-like protein of Bug (Bordetella uptake gene) protein family; contains the ...
23-279 1.64e-25

Uncharacterized NagM-like protein of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold; The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.


Pssm-ID: 270297  Cd Length: 292  Bit Score: 103.12  E-value: 1.64e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641  23 AQINEVHFLIPGGAGGGWDTTARGTGEVLaKSGLVKTVSYQNMSTGGGAKAIAHLiETSAQSDKTLMV--NSTPIIVKSL 100
Cdd:cd13579     1 AAAGPLRILVGFPPGGSADVVARLLAEKL-KDALGQTVIVENRPGAGGRIAAQAL-KAAPPDGSTLLLtpDHTMTIYPLT 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 101 SKELP-QSFRDLTPVAAIIADYQALAVKADSPYQNWAQLLAAYEENPAKVKIaGGSARGSLDHLVAALTFKNAGADaskL 179
Cdd:cd13579    79 YKKLGyDPATDFTPVALVATFPLALAVGPASPVKTLKDFVAWAKAHPGQASV-GVPAPGSLPHFLGLLLGKALGVD---L 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 180 RYVAYDAGGSAMAAVLAGETQAISTGFGEAMEAVKSGQMRILGVTSDKRLPGAEQIPTFSEQNNP-TVFANWRGYFASPT 258
Cdd:cd13579   155 THVPYRGSAPMVQDLLGGQIAAGVDTLGDLLPHHRAGKLRILAVSGAQRSAALPDVPTFAELGFKgLEASGWYGFFAPAG 234
                         250       260
                  ....*....|....*....|.
gi 1801176641 259 ISPEKSAEFAALLKQMYDKPE 279
Cdd:cd13579   235 TPAAVVDRLSAAIRAALASPD 255
TctC pfam03401
Tripartite tricarboxylate transporter family receptor; These probable extra-cytoplasmic solute ...
44-318 1.20e-19

Tripartite tricarboxylate transporter family receptor; These probable extra-cytoplasmic solute receptors are strongly overrepresented in several beta-proteobacteria. This family, formerly known as Bug - Bordetella uptake gene (bug) product - is a family of bacterial tripartite tricarboxylate receptors of the extracytoplasmic solute binding receptor-dependent transporter group of families, distinct from the ABC and TRAP-T families. The TctABC system has been characterized in S. typhimurium, and TctC is the extracytoplasmic tricarboxylate-binding receptor which binds the transporters TctA and TctB, two integral membrane proteins. Complete three-component systems are found only in bacteria.


Pssm-ID: 397461  Cd Length: 274  Bit Score: 86.76  E-value: 1.20e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641  44 ARGTGEVLAKSgLVKTVSYQNMSTGGGAKAiAHLIETSAQSDKTLMVNSTPIIV-KSLSKELP-QSFRDLTPVAAIIADY 121
Cdd:pfam03401   2 ARQAADGMSEK-LGQPVVVENKAGAGGIIG-TQMVAKAAPDGYTILLVSMSVAVaPHFYPKLPyDSVRDLNPISLLATYP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 122 QALAVKADSPYQNWAQLLAAYEENPAKVKIaGGSARGSLDHLVAALTFKNAGAdasKLRYVAYDAGGSAMAAVLAGETQA 201
Cdd:pfam03401  80 FVLVVPADSPFKTLTELIAYAKANPGKLSY-ASPGIGTSNHLAMELLASKAGV---QLSHIPYKGSSPAVQDLLAGHVDS 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 202 ISTGFGEAMEAVKSGQMRILGVTSDKRLPGAEQIPTFSEQNNP-TVFANWRGYFASPTISPEKSAEFAALLKQMYDKPEW 280
Cdd:pfam03401 156 MIASLPSWLPYIEAGKLRALGVTSEDRSARLPDVPTVAESGYKgFEVTSWFGLFAPKGTPPAVVQKLHDAFKKAMDAPAV 235
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1801176641 281 EVVRSRNSWTNLYQSGPEFTAFLDGQEQQIGGLMRELG 318
Cdd:pfam03401 236 VEALANFGMEPYYGNPQQLADFIQDEVKRWGALIEELG 273
PBP2_BugD_Asp cd13576
Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 ...
28-277 1.93e-17

Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold; The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.


Pssm-ID: 270294  Cd Length: 294  Bit Score: 80.88  E-value: 1.93e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641  28 VHFLIPGGAGGGWDTTARGTGEVLAKsGLVKTVSYQNMSTGGGAKAIAHLieTSAQSDK-TLMVNSTPIIVKS--LSKEL 104
Cdd:cd13576     6 VTIIVPFAAGGPSDALARAVAEQMGT-TLGQPVVIENVGGAGGTIGTARA--ARAAPDGyTLLLGHMGTATAPalYYKKL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 105 PQSFRDLTPVAAIIADYQALAVKADSPYQNWAQLLAAYEENPAKVKIAGGSArGSLDHLVAALTFKNAGADASklrYVAY 184
Cdd:cd13576    83 YDPVADFEPVGLIADTPMILVARKDFPAKDLKELVAWVKANPAKVTLGNAGV-GSASHLCGVLLQSALGIKAT---LVPY 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 185 DAGGSAMAAVLAGETQAISTGFGEAMEAVKSGQMRILGVTSDKRLPGAEQIPTFSEQNNPTVFAN-WRGYFASPTISPEK 263
Cdd:cd13576   159 KGTGPAMNDLIGGQVDLMCDQTTNALPQIQAGKVRAYAVTSTERLASLPDVPTSAEAGLPGFEATiWNGLFAPKGTPPAV 238
                         250
                  ....*....|....*
gi 1801176641 264 SAEF-AALLKQMYDK 277
Cdd:cd13576   239 IAKLnAALKTALNDP 253
PBP2_BugE_Glu cd13577
Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 ...
28-255 4.84e-15

Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold; The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.


Pssm-ID: 270295  Cd Length: 292  Bit Score: 73.92  E-value: 4.84e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641  28 VHFLIPGGAGGGWDTTARGTGEVLAKSgLVKTVSYQNMSTGGGAkaiahlIETSAQSDKT-------LMVNSTPIIVKSL 100
Cdd:cd13577     6 ITLIVPFPPGGSTDIVARVLAERLGQI-LGQPVVVENKGGAGGA------IGTSAVARAApdgytlgLATVSTHGANPAV 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 101 SKELP-QSFRDLTPVAAIIADYQALAVKADSPYQNWAQLLAAYEENPAKVKIAGGSArGSLDHLVAALtFKNAGAdaSKL 179
Cdd:cd13577    79 YPKLPyDPIKDFTPVANVVTVPNVLVVHPSVPAKDFKAFVAYLKANPGKYSYASPGA-GTLGHLTAEL-FKQALG--TKI 154
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1801176641 180 RYVAYDAGGSAMAAVLAGETQAISTGFGEAMEAVKSGQMRILGVTSDKRLPGAEQIPTFSEQNNPTV-FANWRGYFA 255
Cdd:cd13577   155 VHVPYRGSGPALTDLLAGQVQVMFDNLPSSLPHIKSGKLRALAVAWPTRLAALPDVPTFAELGFPDLnQPSWYGLVA 231
TauA COG0715
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [Inorganic ion ...
110-321 1.36e-05

ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [Inorganic ion transport and metabolism];


Pssm-ID: 440479 [Multi-domain]  Cd Length: 297  Bit Score: 46.15  E-value: 1.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 110 DLTPVAAII-ADYQALAVKADSPYQNWAQLlaayeenpAKVKIAGgsARGSLDHLVAALTFKNAGADASKLRYVAYDAGg 188
Cdd:COG0715    92 PVKAVAALSqSGGNALVVRKDSGIKSLADL--------KGKKVAV--PGGSTSHYLLRALLAKAGLDPKDVEIVNLPPP- 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801176641 189 SAMAAVLAGETQAISTGFGEAMEAVKSGQMRILgvtsdkrLPGAEQIPTFSE----------QNNPTVFANW-RGYFASP 257
Cdd:COG0715   161 DAVAALLAGQVDAAVVWEPFESQAEKKGGGRVL-------ADSADLVPGYPGdvlvasedflEENPEAVKAFlRALLKAW 233
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1801176641 258 TISPEKSAEFAALLKQMYDKPEwEVVrsRNSWTNLYQSGPEFTAFLDGQEQQIGGLMRELGFIK 321
Cdd:COG0715   234 AWAAANPDEAAAILAKATGLDP-EVL--AAALEGDLRLDPPLGAPDPARLQRVADFLVELGLLP 294
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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