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Conserved domains on  [gi|1806859789|ref|WP_162316872|]
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MULTISPECIES: DNA-directed RNA polymerase subunit P [Haloarcula]

Protein Classification

DNA-directed RNA polymerase subunit P( domain architecture ID 10011415)

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpoP PRK00398
DNA-directed RNA polymerase subunit P; Provisional
 1-43 8.44e-16

DNA-directed RNA polymerase subunit P; Provisional


:

Pssm-ID: 234747  Cd Length: 46  Bit Score: 62.61  E-value: 8.44e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1806859789  1 MSYKCSRCKRDVTLDEYG-GVRCPYCGHRVLLKERSPDVKEIDV 43
Cdd:PRK00398   2 AEYKCARCGREVELDEYGtGVRCPYCGYRILFKERPPVVKRVKA 45
 
Name Accession Description Interval E-value
rpoP PRK00398
DNA-directed RNA polymerase subunit P; Provisional
 1-43 8.44e-16

DNA-directed RNA polymerase subunit P; Provisional


Pssm-ID: 234747  Cd Length: 46  Bit Score: 62.61  E-value: 8.44e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1806859789  1 MSYKCSRCKRDVTLDEYG-GVRCPYCGHRVLLKERSPDVKEIDV 43
Cdd:PRK00398   2 AEYKCARCGREVELDEYGtGVRCPYCGYRILFKERPPVVKRVKA 45
RPOLCX smart00659
RNA polymerase subunit CX; present in RNA polymerase I, II and III
 1-43 4.73e-13

RNA polymerase subunit CX; present in RNA polymerase I, II and III


Pssm-ID: 128906  Cd Length: 44  Bit Score: 55.44  E-value: 4.73e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1806859789   1 MSYKCSRCKRDVTLDEYGGVRCPYCGHRVLLKERSPDVKEIDV 43
Cdd:smart00659  1 MIYICGECGRENEIKSKDVVRCRECGYRILYKKRTKRLVEVKA 43
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 1-41 6.33e-12

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441599  Cd Length: 48  Bit Score: 52.78  E-value: 6.33e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 1806859789  1 MSYKCSRCKRDVTLDE-YGGVRCPYCGHRVLLKERSPDVKEI 41
Cdd:COG1996    4 VEYKCPRCGAEVELDEgTPAIRCPYCGSRIFIKERPPVVKRV 45
DNA_RNApol_7kD pfam03604
DNA directed RNA polymerase, 7 kDa subunit;
3-34 7.63e-04

DNA directed RNA polymerase, 7 kDa subunit;


Pssm-ID: 427393  Cd Length: 32  Bit Score: 32.27  E-value: 7.63e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 1806859789  3 YKCSRCKRDVTLDEYGGVRCPYCGHRVLLKER 34
Cdd:pfam03604  1 YICGECGAEVSLKRGDPIRCKECGHRILYKKR 32
 
Name Accession Description Interval E-value
rpoP PRK00398
DNA-directed RNA polymerase subunit P; Provisional
 1-43 8.44e-16

DNA-directed RNA polymerase subunit P; Provisional


Pssm-ID: 234747  Cd Length: 46  Bit Score: 62.61  E-value: 8.44e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1806859789  1 MSYKCSRCKRDVTLDEYG-GVRCPYCGHRVLLKERSPDVKEIDV 43
Cdd:PRK00398   2 AEYKCARCGREVELDEYGtGVRCPYCGYRILFKERPPVVKRVKA 45
RPOLCX smart00659
RNA polymerase subunit CX; present in RNA polymerase I, II and III
 1-43 4.73e-13

RNA polymerase subunit CX; present in RNA polymerase I, II and III


Pssm-ID: 128906  Cd Length: 44  Bit Score: 55.44  E-value: 4.73e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1806859789   1 MSYKCSRCKRDVTLDEYGGVRCPYCGHRVLLKERSPDVKEIDV 43
Cdd:smart00659  1 MIYICGECGRENEIKSKDVVRCRECGYRILYKKRTKRLVEVKA 43
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 1-41 6.33e-12

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441599  Cd Length: 48  Bit Score: 52.78  E-value: 6.33e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 1806859789  1 MSYKCSRCKRDVTLDE-YGGVRCPYCGHRVLLKERSPDVKEI 41
Cdd:COG1996    4 VEYKCPRCGAEVELDEgTPAIRCPYCGSRIFIKERPPVVKRV 45
PRK14714 PRK14714
DNA-directed DNA polymerase II large subunit;
3-26 5.11e-04

DNA-directed DNA polymerase II large subunit;


Pssm-ID: 237798 [Multi-domain]  Cd Length: 1337  Bit Score: 34.67  E-value: 5.11e-04
                           10        20
                   ....*....|....*....|....
gi 1806859789    3 YKCSRCKRDVTLDEYGGVRCPYCG 26
Cdd:PRK14714   693 YVCPDCGAEVPPDESGRVECPRCD 716
DNA_RNApol_7kD pfam03604
DNA directed RNA polymerase, 7 kDa subunit;
3-34 7.63e-04

DNA directed RNA polymerase, 7 kDa subunit;


Pssm-ID: 427393  Cd Length: 32  Bit Score: 32.27  E-value: 7.63e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 1806859789  3 YKCSRCKRDVTLDEYGGVRCPYCGHRVLLKER 34
Cdd:pfam03604  1 YICGECGAEVSLKRGDPIRCKECGHRILYKKR 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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