RnfH family protein [Aromatoleum buckelii]
RnfH family protein( domain architecture ID 10508429)
RnfH family protein, a member of the ubiquitin superfamily, is involved in transporting electrons for various reductive reactions such as nitrogen fixation and may also play a role in the SmpB-tmRNA-based tagging and degradation system of bacteria
List of domain hits
Name | Accession | Description | Interval | E-value | |||
Ub-RnfH | pfam03658 | RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of ... |
1-83 | 1.31e-45 | |||
RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation. : Pssm-ID: 427429 Cd Length: 83 Bit Score: 141.03 E-value: 1.31e-45
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Name | Accession | Description | Interval | E-value | |||
Ub-RnfH | pfam03658 | RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of ... |
1-83 | 1.31e-45 | |||
RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation. Pssm-ID: 427429 Cd Length: 83 Bit Score: 141.03 E-value: 1.31e-45
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PasI | COG2914 | Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH ... |
1-84 | 1.74e-45 | |||
Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH superfamily [Defense mechanisms]; Pssm-ID: 442158 Cd Length: 92 Bit Score: 141.02 E-value: 1.74e-45
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PRK01777 | PRK01777 | RnfH family protein; |
1-88 | 3.39e-33 | |||
RnfH family protein; Pssm-ID: 234982 Cd Length: 95 Bit Score: 110.07 E-value: 3.39e-33
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Name | Accession | Description | Interval | E-value | |||
Ub-RnfH | pfam03658 | RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of ... |
1-83 | 1.31e-45 | |||
RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation. Pssm-ID: 427429 Cd Length: 83 Bit Score: 141.03 E-value: 1.31e-45
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PasI | COG2914 | Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH ... |
1-84 | 1.74e-45 | |||
Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH superfamily [Defense mechanisms]; Pssm-ID: 442158 Cd Length: 92 Bit Score: 141.02 E-value: 1.74e-45
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PRK01777 | PRK01777 | RnfH family protein; |
1-88 | 3.39e-33 | |||
RnfH family protein; Pssm-ID: 234982 Cd Length: 95 Bit Score: 110.07 E-value: 3.39e-33
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MoaD | COG1977 | Molybdopterin synthase sulfur carrier subunit MoaD [Coenzyme transport and metabolism]; ... |
16-75 | 2.06e-06 | |||
Molybdopterin synthase sulfur carrier subunit MoaD [Coenzyme transport and metabolism]; Molybdopterin synthase sulfur carrier subunit MoaD is part of the Pathway/BioSystem: Molybdopterin biosynthesis Pssm-ID: 441580 [Multi-domain] Cd Length: 82 Bit Score: 41.73 E-value: 2.06e-06
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TGS | pfam02824 | TGS domain; The TGS domain is named after ThrRS, GTPase, and SpoT. Interestingly, TGS domain ... |
18-70 | 1.41e-03 | |||
TGS domain; The TGS domain is named after ThrRS, GTPase, and SpoT. Interestingly, TGS domain was detected also at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organizm, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. Pssm-ID: 427005 [Multi-domain] Cd Length: 60 Bit Score: 33.67 E-value: 1.41e-03
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Blast search parameters | ||||
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