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Conserved domains on  [gi|1839917424|ref|WP_169975669|]
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multiheme c-type cytochrome [Campylobacter sp. RM16191]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
decahem_SO1788 super family cl28266
decaheme c-type cytochrome, OmcA/MtrC family; The protein SO_1778 (MtrC) of Shewanella ...
 313-441 4.28e-04

decaheme c-type cytochrome, OmcA/MtrC family; The protein SO_1778 (MtrC) of Shewanella oneidensis MR-1, and its paralog SO_1779 (OmcA), with which it intteracts, are large decaheme proteins, about 900 amino acids in length, involved in the use of manganese [Mn(III/IV)] and iron [Fe(III)] as terminal electron acceptors. This model represents these and similar decaheme proteins, found also in Rhodoferax ferrireducens DSM 15236, Aeromonas hydrophila ATCC7966, and a few other bacterial species. [Energy metabolism, Electron transport]


The actual alignment was detected with superfamily member TIGR03507:

Pssm-ID: 274617 [Multi-domain]  Cd Length: 659  Bit Score: 43.29  E-value: 4.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839917424 313 SCEECHGAGAHlYGARGAGmPSNCERCHQRfawHKADAEKNPRKQF------------NAYFKSSCPSCGTEGAQM-FSS 379
Cdd:TIGR03507 159 ACNSCHGELAL-HGGRRID-VELCVTCHNP---STADPGSGNSLDFavmihkihmgkkLPSVDSGDPYIGYGNAKIdFSD 233

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1839917424 380 AHYDEGMR-CSTCHD---PHEVTANDWKDGYTltglKKTCEDCHeVQKSF-----FKQGGIHAKDNCTGCH 441
Cdd:TIGR03507 234 VGFPQDPRnCTTCHSganTKTADADNWKTVPS----MAACGSCH-DNVNFatganHVNQTQADDTQCAACH 299
Cytochrome_C554 super family cl47164
Cytochrome c554 and c-prime; This family is a tetra-haem cytochrome involved in the oxidation ...
 116-136 3.39e-03

Cytochrome c554 and c-prime; This family is a tetra-haem cytochrome involved in the oxidation of ammonia. It is found in both phototrophic and denitrifying bacteria.


The actual alignment was detected with superfamily member pfam13435:

Pssm-ID: 372604 [Multi-domain]  Cd Length: 84  Bit Score: 37.11  E-value: 3.39e-03
                          10        20
                  ....*....|....*....|.
gi 1839917424 116 KCGECHPAQYMQWERSRHAKT 136
Cdd:pfam13435   1 ACAECHEDQYENWKGTAHAKA 21
 
Name Accession Description Interval E-value
decahem_SO1788 TIGR03507
decaheme c-type cytochrome, OmcA/MtrC family; The protein SO_1778 (MtrC) of Shewanella ...
 313-441 4.28e-04

decaheme c-type cytochrome, OmcA/MtrC family; The protein SO_1778 (MtrC) of Shewanella oneidensis MR-1, and its paralog SO_1779 (OmcA), with which it intteracts, are large decaheme proteins, about 900 amino acids in length, involved in the use of manganese [Mn(III/IV)] and iron [Fe(III)] as terminal electron acceptors. This model represents these and similar decaheme proteins, found also in Rhodoferax ferrireducens DSM 15236, Aeromonas hydrophila ATCC7966, and a few other bacterial species. [Energy metabolism, Electron transport]


Pssm-ID: 274617 [Multi-domain]  Cd Length: 659  Bit Score: 43.29  E-value: 4.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839917424 313 SCEECHGAGAHlYGARGAGmPSNCERCHQRfawHKADAEKNPRKQF------------NAYFKSSCPSCGTEGAQM-FSS 379
Cdd:TIGR03507 159 ACNSCHGELAL-HGGRRID-VELCVTCHNP---STADPGSGNSLDFavmihkihmgkkLPSVDSGDPYIGYGNAKIdFSD 233

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1839917424 380 AHYDEGMR-CSTCHD---PHEVTANDWKDGYTltglKKTCEDCHeVQKSF-----FKQGGIHAKDNCTGCH 441
Cdd:TIGR03507 234 VGFPQDPRnCTTCHSganTKTADADNWKTVPS----MAACGSCH-DNVNFatganHVNQTQADDTQCAACH 299
Cytochrome_C554 pfam13435
Cytochrome c554 and c-prime; This family is a tetra-haem cytochrome involved in the oxidation ...
 116-136 3.39e-03

Cytochrome c554 and c-prime; This family is a tetra-haem cytochrome involved in the oxidation of ammonia. It is found in both phototrophic and denitrifying bacteria.


Pssm-ID: 372604 [Multi-domain]  Cd Length: 84  Bit Score: 37.11  E-value: 3.39e-03
                          10        20
                  ....*....|....*....|.
gi 1839917424 116 KCGECHPAQYMQWERSRHAKT 136
Cdd:pfam13435   1 ACAECHEDQYENWKGTAHAKA 21
 
Name Accession Description Interval E-value
decahem_SO1788 TIGR03507
decaheme c-type cytochrome, OmcA/MtrC family; The protein SO_1778 (MtrC) of Shewanella ...
 313-441 4.28e-04

decaheme c-type cytochrome, OmcA/MtrC family; The protein SO_1778 (MtrC) of Shewanella oneidensis MR-1, and its paralog SO_1779 (OmcA), with which it intteracts, are large decaheme proteins, about 900 amino acids in length, involved in the use of manganese [Mn(III/IV)] and iron [Fe(III)] as terminal electron acceptors. This model represents these and similar decaheme proteins, found also in Rhodoferax ferrireducens DSM 15236, Aeromonas hydrophila ATCC7966, and a few other bacterial species. [Energy metabolism, Electron transport]


Pssm-ID: 274617 [Multi-domain]  Cd Length: 659  Bit Score: 43.29  E-value: 4.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839917424 313 SCEECHGAGAHlYGARGAGmPSNCERCHQRfawHKADAEKNPRKQF------------NAYFKSSCPSCGTEGAQM-FSS 379
Cdd:TIGR03507 159 ACNSCHGELAL-HGGRRID-VELCVTCHNP---STADPGSGNSLDFavmihkihmgkkLPSVDSGDPYIGYGNAKIdFSD 233

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1839917424 380 AHYDEGMR-CSTCHD---PHEVTANDWKDGYTltglKKTCEDCHeVQKSF-----FKQGGIHAKDNCTGCH 441
Cdd:TIGR03507 234 VGFPQDPRnCTTCHSganTKTADADNWKTVPS----MAACGSCH-DNVNFatganHVNQTQADDTQCAACH 299
Cytochrome_C554 pfam13435
Cytochrome c554 and c-prime; This family is a tetra-haem cytochrome involved in the oxidation ...
 116-136 3.39e-03

Cytochrome c554 and c-prime; This family is a tetra-haem cytochrome involved in the oxidation of ammonia. It is found in both phototrophic and denitrifying bacteria.


Pssm-ID: 372604 [Multi-domain]  Cd Length: 84  Bit Score: 37.11  E-value: 3.39e-03
                          10        20
                  ....*....|....*....|.
gi 1839917424 116 KCGECHPAQYMQWERSRHAKT 136
Cdd:pfam13435   1 ACAECHEDQYENWKGTAHAKA 21
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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