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Conserved domains on  [gi|1841785889|ref|WP_170940458|]
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5-oxoprolinase subunit PxpB [Pseudoalteromonas sp. NBT06-2]

Protein Classification

allophanate hydrolase subunit 1( domain architecture ID 10005226)

allophanate hydrolase subunit 1 (AHS1) converts allophanate to ammonium and carbon dioxide, and is essential for utilization of urea as a nitrogen source in bacteria

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
4-230 3.08e-98

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


:

Pssm-ID: 441652  Cd Length: 229  Bit Score: 285.50  E-value: 3.08e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889   4 DKYRIVPNGDSAITILFNDDISEHLTKRIIGFSLTIKQSLGEALIDIIPAYKSLTIFFNNRIILLDKLIGEIELLLSSPL 83
Cdd:COG2049     3 MAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLRALLAELD 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889  84 TEVSYQSKTIEIPVCYEEGYGPDLTSLAQHCKLSVEDVIAGHTQRSYLVHMLGFLPGFLYLGGLSTNLSCPRKSTPAISI 163
Cdd:COG2049    83 AAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRV 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1841785889 164 PAGSVAIGDSQTGIYPVSSPGGWHIIGRTPLTLFNPNSQTPFIASPLDKIHFVSISKTEFTAIKKSF 230
Cdd:COG2049   163 PAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFDALRGEV 229
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
4-230 3.08e-98

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 285.50  E-value: 3.08e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889   4 DKYRIVPNGDSAITILFNDDISEHLTKRIIGFSLTIKQSLGEALIDIIPAYKSLTIFFNNRIILLDKLIGEIELLLSSPL 83
Cdd:COG2049     3 MAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLRALLAELD 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889  84 TEVSYQSKTIEIPVCYEEGYGPDLTSLAQHCKLSVEDVIAGHTQRSYLVHMLGFLPGFLYLGGLSTNLSCPRKSTPAISI 163
Cdd:COG2049    83 AAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRV 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1841785889 164 PAGSVAIGDSQTGIYPVSSPGGWHIIGRTPLTLFNPNSQTPFIASPLDKIHFVSISKTEFTAIKKSF 230
Cdd:COG2049   163 PAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFDALRGEV 229
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
7-205 7.61e-87

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 255.56  E-value: 7.61e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889   7 RIVPNGDSAITILFNDDISEHLTKRIIGFSLTIKQSLGEALIDIIPAYKSLTIFFNNRIILLDKLIGEIELLLSSPLTEV 86
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAPLPGVVEVVPGYRSLLVHYDPLVTDLAALEARLRALLAALEAAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889  87 SYQSKTIEIPVCYEEGYGPDLTSLAQHCKLSVEDVIAGHTQRSYLVHMLGFLPGFLYLGGLSTNLSCPRKSTPAISIPAG 166
Cdd:pfam02682  81 APGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVPAG 160
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1841785889 167 SVAIGDSQTGIYPVSSPGGWHIIGRTPLTLFNPNSQTPF 205
Cdd:pfam02682 161 SVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPA 199
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
7-205 2.79e-81

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 241.27  E-value: 2.79e-81
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889    7 RIVPNGDSAITILFNDDISEHLTKRIIGFSLTIKQSLGEALIDIIPAYKSLTIFFNNRIILLDKLIGEIELLLSSPLTEV 86
Cdd:smart00796   2 RIRPAGDRALLVEFGDEIDLALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDPLVIDPAALLARLRALEALPLAEA 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889   87 -SYQSKTIEIPVCYEEGYGPDLTSLAQHCKLSVEDVIAGHTQRSYLVHMLGFLPGFLYLGGLSTNLSCPRKSTPAISIPA 165
Cdd:smart00796  82 lEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVPA 161
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1841785889  166 GSVAIGDSQTGIYPVSSPGGWHIIGRTPLTLFNPNSQTPF 205
Cdd:smart00796 162 GSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
12-216 6.58e-59

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 184.67  E-value: 6.58e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889  12 GDSAITILFNDDISEHLTKRIIGFSLTIKQSLGeaLIDIIPAYKSLTIFFNNRIILLDKLIGeiellLSSPLTEVS---Y 88
Cdd:TIGR00370   2 GESAVVIRLGPPINEQVQGIVWAAAAYLEEQPG--FVECIPGMNNLTVFYDMYEVYKHLPQR-----LSSPWEEVKdyeV 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889  89 QSKTIEIPVCYEEGYGPDLTSLAQHCKLSVEDVIAGHTQRSYLVHMLGFLPGFLYLGGLSTNLSCPRKSTPAISIPAGSV 168
Cdd:TIGR00370  75 NRRIIEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSV 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1841785889 169 AIGDSQTGIYPVSSPGGWHIIGRTPLTLFNPNSQTPFIASPLDKIHFV 216
Cdd:TIGR00370 155 GIGGLQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKFV 202
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
4-230 3.08e-98

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 285.50  E-value: 3.08e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889   4 DKYRIVPNGDSAITILFNDDISEHLTKRIIGFSLTIKQSLGEALIDIIPAYKSLTIFFNNRIILLDKLIGEIELLLSSPL 83
Cdd:COG2049     3 MAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLRALLAELD 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889  84 TEVSYQSKTIEIPVCYEEGYGPDLTSLAQHCKLSVEDVIAGHTQRSYLVHMLGFLPGFLYLGGLSTNLSCPRKSTPAISI 163
Cdd:COG2049    83 AAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRV 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1841785889 164 PAGSVAIGDSQTGIYPVSSPGGWHIIGRTPLTLFNPNSQTPFIASPLDKIHFVSISKTEFTAIKKSF 230
Cdd:COG2049   163 PAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFDALRGEV 229
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
7-205 7.61e-87

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 255.56  E-value: 7.61e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889   7 RIVPNGDSAITILFNDDISEHLTKRIIGFSLTIKQSLGEALIDIIPAYKSLTIFFNNRIILLDKLIGEIELLLSSPLTEV 86
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAPLPGVVEVVPGYRSLLVHYDPLVTDLAALEARLRALLAALEAAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889  87 SYQSKTIEIPVCYEEGYGPDLTSLAQHCKLSVEDVIAGHTQRSYLVHMLGFLPGFLYLGGLSTNLSCPRKSTPAISIPAG 166
Cdd:pfam02682  81 APGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVPAG 160
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1841785889 167 SVAIGDSQTGIYPVSSPGGWHIIGRTPLTLFNPNSQTPF 205
Cdd:pfam02682 161 SVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPA 199
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
7-205 2.79e-81

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 241.27  E-value: 2.79e-81
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889    7 RIVPNGDSAITILFNDDISEHLTKRIIGFSLTIKQSLGEALIDIIPAYKSLTIFFNNRIILLDKLIGEIELLLSSPLTEV 86
Cdd:smart00796   2 RIRPAGDRALLVEFGDEIDLALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDPLVIDPAALLARLRALEALPLAEA 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889   87 -SYQSKTIEIPVCYEEGYGPDLTSLAQHCKLSVEDVIAGHTQRSYLVHMLGFLPGFLYLGGLSTNLSCPRKSTPAISIPA 165
Cdd:smart00796  82 lEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVPA 161
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1841785889  166 GSVAIGDSQTGIYPVSSPGGWHIIGRTPLTLFNPNSQTPF 205
Cdd:smart00796 162 GSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
12-216 6.58e-59

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 184.67  E-value: 6.58e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889  12 GDSAITILFNDDISEHLTKRIIGFSLTIKQSLGeaLIDIIPAYKSLTIFFNNRIILLDKLIGeiellLSSPLTEVS---Y 88
Cdd:TIGR00370   2 GESAVVIRLGPPINEQVQGIVWAAAAYLEEQPG--FVECIPGMNNLTVFYDMYEVYKHLPQR-----LSSPWEEVKdyeV 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841785889  89 QSKTIEIPVCYEEGYGPDLTSLAQHCKLSVEDVIAGHTQRSYLVHMLGFLPGFLYLGGLSTNLSCPRKSTPAISIPAGSV 168
Cdd:TIGR00370  75 NRRIIEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSV 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1841785889 169 AIGDSQTGIYPVSSPGGWHIIGRTPLTLFNPNSQTPFIASPLDKIHFV 216
Cdd:TIGR00370 155 GIGGLQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKFV 202
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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