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Conserved domains on  [gi|1844849644|ref|WP_171557656|]
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MULTISPECIES: tetratricopeptide repeat protein [unclassified Roseobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 19-142 6.99e-18

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 80.42  E-value: 6.99e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  19 HQATSRLGADRQGLAAPAGTHVLRDAVDGLIVGHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAE 98
Cdd:COG3914    53 EAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEAL 132

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1844849644  99 TWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAFALD 142
Cdd:COG3914   133 AALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 19-142 6.99e-18

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 80.42  E-value: 6.99e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  19 HQATSRLGADRQGLAAPAGTHVLRDAVDGLIVGHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAE 98
Cdd:COG3914    53 EAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEAL 132

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1844849644  99 TWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAFALD 142
Cdd:COG3914   133 AALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 58-142 3.39e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 46.62  E-value: 3.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  58 GEYELALRAYMRATAEDGPSGahFSALGSANLQL--GRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVF 135
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRSL--YAKLGLAQLALaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216


                  ....*..
gi 1844849644 136 QHAFALD 142
Cdd:TIGR02917 217 RKAIALR 223
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 89-142 4.90e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.70  E-value: 4.90e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1844849644  89 LQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAFALD 142
Cdd:cd24142    11 LDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELD 64
TPR_17 pfam13431
Tetratricopeptide repeat;
101-133 8.65e-06

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 40.99  E-value: 8.65e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1844849644 101 LRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQ 133
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 15-163 4.13e-05

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 43.36  E-value: 4.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  15 AACGHQATSRLGADRQGLAAPAGTHVLRDAVDGLIVGHRLMeAGEYELALRAYMRATAEdGPSGAHFSALGSANLQLGRL 94
Cdd:PRK09782  548 AANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI-PGQPELALNDLTRSLNI-APSANAYVARATIYRQRHNV 625

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1844849644  95 GQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAfALDSGQSDSIRENLRLAIARMENS 163
Cdd:PRK09782  626 PAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA-HKGLPDDPALIRQLAYVNQRLDDM 693
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 115-142 9.71e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 32.80  E-value: 9.71e-03
                           10        20
                   ....*....|....*....|....*...
gi 1844849644  115 WNNLGVVLMERGEYGEARQVFQHAFALD 142
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELD 31
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 19-142 6.99e-18

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 80.42  E-value: 6.99e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  19 HQATSRLGADRQGLAAPAGTHVLRDAVDGLIVGHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAE 98
Cdd:COG3914    53 EAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEAL 132

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1844849644  99 TWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAFALD 142
Cdd:COG3914   133 AALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 51-159 4.50e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 68.49  E-value: 4.50e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  51 GHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGE 130
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103

                          90       100
                  ....*....|....*....|....*....
gi 1844849644 131 ARQVFQHAFALDSGqsDSIRENLRLAIAR 159
Cdd:COG4235   104 AIAAWQKLLALLPA--DAPARLLEASIAE 130
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
54-162 2.26e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.88  E-value: 2.26e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  54 LMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQ 133
Cdd:COG0457    18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97

                          90       100
                  ....*....|....*....|....*....
gi 1844849644 134 VFQHAFALDSGQSDsIRENLRLAIARMEN 162
Cdd:COG0457    98 DYDKALELDPDDAE-ALYNLGLALLELGR 125
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
51-162 2.35e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.88  E-value: 2.35e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  51 GHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGE 130
Cdd:COG0457    49 GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1844849644 131 ARQVFQHAFALDSGQSDSiRENLRLAIARMEN 162
Cdd:COG0457   129 AIEAYERALELDPDDADA-LYNLGIALEKLGR 159
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 51-147 2.69e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.41  E-value: 2.69e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  51 GHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGE 130
Cdd:COG3914   119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                          90
                  ....*....|....*..
gi 1844849644 131 ARQVFQHAFALDSGQSD 147
Cdd:COG3914   199 AIAAYRRALELDPDNAD 215
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 54-161 3.19e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.67  E-value: 3.19e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  54 LMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQ 133
Cdd:COG4783    14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALA 93

                          90       100
                  ....*....|....*....|....*...
gi 1844849644 134 VFQHAFALDsgqSDSIRENLRLAIARME 161
Cdd:COG4783    94 LLEKALKLD---PEHPEAYLRLARAYRA 118
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
54-142 4.49e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 62.11  E-value: 4.49e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  54 LMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETwLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQ 133
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                  ....*....
gi 1844849644 134 VFQHAFALD 142
Cdd:COG3063    81 YLERALELD 89
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 25-142 8.76e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 63.06  E-value: 8.76e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  25 LGADRQGLAAPAGTHVLRDAVDGLIVGHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRA 104
Cdd:COG5010    35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKA 114

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1844849644 105 VEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAFALD 142
Cdd:COG5010   115 LALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 32-162 2.77e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 61.90  E-value: 2.77e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  32 LAAPAGTHVLRDAVDGLIVGHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDF 111
Cdd:COG5010     8 DRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN 87

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1844849644 112 PPSWNNLGVVLMERGEYGEARQVFQHAFALDSGQSDsIRENLRLAIARMEN 162
Cdd:COG5010    88 PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN-AYSNLAALLLSLGQ 137
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
51-159 2.78e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.10  E-value: 2.78e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  51 GHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGE 130
Cdd:COG0457    83 GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162

                          90       100
                  ....*....|....*....|....*....
gi 1844849644 131 ARQVFQHAFALDSGQSDSIRENLRLAIAR 159
Cdd:COG0457   163 ALELLEKLEAAALAALLAAALGEAALALA 191
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 54-142 4.80e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.13  E-value: 4.80e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  54 LMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQ 133
Cdd:COG2956   120 YEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIA 199


                  ....*....
gi 1844849644 134 VFQHAFALD 142
Cdd:COG2956   200 ALERALEQD 208
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 10-142 5.75e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.39  E-value: 5.75e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  10 TILGLAACGHQATSRLGADRQGLAAPAGTHVLRDAVDGLIVGHRLMEAGEYELALRAYMRATAED------GPSGAHFSA 83
Cdd:COG3914     4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAaaaaalLLLAALLEL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1844849644  84 LGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAFALD 142
Cdd:COG3914    84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN 142
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
51-142 2.01e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 57.62  E-value: 2.01e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  51 GHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGE 130
Cdd:COG4785    80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159

                          90
                  ....*....|..
gi 1844849644 131 ARQVFQHAFALD 142
Cdd:COG4785   160 AIADLEKALELD 171
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 51-145 2.02e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.35  E-value: 2.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  51 GHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGE 130
Cdd:COG4783    45 GEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124

                          90
                  ....*....|....*
gi 1844849644 131 ARQVFQHAFALDSGQ 145
Cdd:COG4783   125 AIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
84-148 8.38e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.17  E-value: 8.38e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1844849644  84 LGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAFALDSGQSDS 148
Cdd:COG0457    14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
89-161 1.51e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 52.87  E-value: 1.51e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1844849644  89 LQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQvFQHAFALDSGQSDSireNLRLAIARME 161
Cdd:COG3063     3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEA---LLNLAELLLE 71
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 55-162 2.44e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 2.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  55 MEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQV 134
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                          90       100
                  ....*....|....*....|....*...
gi 1844849644 135 FQHAFALDsgqSDSIRENLRLAIARMEN 162
Cdd:COG2956   167 LEKALKLD---PDCARALLLLAELYLEQ 191
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 59-162 2.65e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 2.65e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  59 EYELALRAYMRATAEDGPSgahFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHA 138
Cdd:COG4235     1 EAIARLRQALAANPNDAEG---WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA 77

                          90       100
                  ....*....|....*....|....
gi 1844849644 139 FALDsgqSDSIRENLRLAIARMEN 162
Cdd:COG4235    78 LALD---PDNPEALYLLGLAAFQQ 98
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 54-162 3.93e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 3.93e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  54 LMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQ 133
Cdd:COG2956   154 YLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALE 233

                          90       100
                  ....*....|....*....|....*....
gi 1844849644 134 VFQHAFALDsgQSDSIRENLRLAIARMEN 162
Cdd:COG2956   234 LLRKALELD--PSDDLLLALADLLERKEG 260
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
60-160 4.14e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.45  E-value: 4.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  60 YELALRAYMRATAEDGPSGAHFSaLGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAF 139
Cdd:COG4785    56 AALAAERIDRALALPDLAQLYYE-RGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134

                          90       100
                  ....*....|....*....|.
gi 1844849644 140 ALDSGQSDSIrenLRLAIARM 160
Cdd:COG4785   135 ELDPDYAYAY---LNRGIALY 152
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 51-147 8.45e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.88  E-value: 8.45e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  51 GHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGE 130
Cdd:COG2956    49 GNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEK 128

                          90
                  ....*....|....*..
gi 1844849644 131 ARQVFQHAFALDSGQSD 147
Cdd:COG2956   129 AIEVLERLLKLGPENAH 145
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 48-159 1.12e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.50  E-value: 1.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  48 LIVGHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGE 127
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1844849644 128 YGEARQVFQHAFALDSGQSDSIRENLRLAIAR 159
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQE 123
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 48-138 1.30e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.11  E-value: 1.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  48 LIVGHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDfPPSWNNLGVVLMERGE 127
Cdd:COG2956   182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEG 260

                          90
                  ....*....|.
gi 1844849644 128 YGEARQVFQHA 138
Cdd:COG2956   261 LEAALALLERQ 271
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 83-142 1.62e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.26  E-value: 1.62e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  83 ALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAFALD 142
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD 68
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 54-136 3.36e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.91  E-value: 3.36e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  54 LMEAGEYELALRAYmRATAEDGPSG-----AHFsALGSANLQLGRLGQAETWLRRAVEEDPD---FPPSWNNLGVVLMER 125
Cdd:COG1729     3 LLKAGDYDEAIAAF-KAFLKRYPNSplapdALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80

                          90
                  ....*....|.
gi 1844849644 126 GEYGEARQVFQ 136
Cdd:COG1729    81 GDYDKARATLE 91
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 51-161 3.94e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.22  E-value: 3.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  51 GHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGE 130
Cdd:COG3914   153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEV 232

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1844849644 131 ARQVFQHAFALDSGQS------------DSIRENLRLAIARME 161
Cdd:COG3914   233 YDRFEELLAALARGPSelspfallylpdDDPAELLALARAWAQ 275
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 58-142 3.39e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 46.62  E-value: 3.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  58 GEYELALRAYMRATAEDGPSGahFSALGSANLQL--GRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVF 135
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRSL--YAKLGLAQLALaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216


                  ....*..
gi 1844849644 136 QHAFALD 142
Cdd:TIGR02917 217 RKAIALR 223
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 89-142 4.90e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.70  E-value: 4.90e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1844849644  89 LQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAFALD 142
Cdd:cd24142    11 LDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELD 64
TPR_17 pfam13431
Tetratricopeptide repeat;
101-133 8.65e-06

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 40.99  E-value: 8.65e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1844849644 101 LRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQ 133
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 51-110 2.40e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 40.78  E-value: 2.40e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1844849644  51 GHRLMEAGEYELALRAYMRATAEDGPSGAHFSA---LGSANLQLGRLGQAETWLRRAVEEDPD 110
Cdd:pfam13432   4 ARAALRAGDYDDAAAALEAALARFPESPDAAAAlllLGLAALRQGRLAEAAAAYRAALRAAPG 66
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 15-163 4.13e-05

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 43.36  E-value: 4.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  15 AACGHQATSRLGADRQGLAAPAGTHVLRDAVDGLIVGHRLMeAGEYELALRAYMRATAEdGPSGAHFSALGSANLQLGRL 94
Cdd:PRK09782  548 AANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI-PGQPELALNDLTRSLNI-APSANAYVARATIYRQRHNV 625

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1844849644  95 GQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAfALDSGQSDSIRENLRLAIARMENS 163
Cdd:PRK09782  626 PAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA-HKGLPDDPALIRQLAYVNQRLDDM 693
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 59-146 8.88e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 42.08  E-value: 8.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  59 EYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHA 138
Cdd:PLN03088   17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKG 96


                  ....*...
gi 1844849644 139 FALDSGQS 146
Cdd:PLN03088   97 ASLAPGDS 104
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 49-158 1.26e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.99  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  49 IVGHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEED-------------------- 108
Cdd:TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDpelgradlllilsylrsgqf 447

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1844849644 109 --------------PDFPPSWNNLGVVLMERGEYGEARQVFQHAFALDSGQSDSIRENLRLAIA 158
Cdd:TIGR02917 448 dkalaaakklekkqPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
51-158 1.30e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.05  E-value: 1.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  51 GHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGeYGE 130
Cdd:COG4785   114 GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD-PEK 192

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1844849644 131 ARQVFQHAFA---LDSGQSDSIRENLRLAIA 158
Cdd:COG4785   193 ALALLLEDWAtayLLQGDTEEARELFKLALA 223
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 13-150 1.34e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 41.99  E-value: 1.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644   13 GLAAC-GHQATSRLGADRQGLAApagTHVLRDAVDGLivGHRLMEAGEYELALRAYMRATAED--GPSGAHFSAL----- 84
Cdd:PRK11447   276 GLAAVdSGQGGKAIPELQQAVRA---NPKDSEALGAL--GQAYSQQGDRARAVAQFEKALALDphSSNRDKWESLlkvnr 350

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1844849644   85 -------GSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAFALDSGQSDSIR 150
Cdd:PRK11447   351 ywlliqqGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 54-110 4.41e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 39.92  E-value: 4.41e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1844849644  54 LMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPD 110
Cdd:cd24142    10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
105-148 4.86e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.60  E-value: 4.86e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1844849644 105 VEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAFALDSGQSDS 148
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA 44
TPR_11 pfam13414
TPR repeat;
85-126 8.75e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.91  E-value: 8.75e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1844849644  85 GSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERG 126
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 115-142 1.24e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.19  E-value: 1.24e-03
                          10        20
                  ....*....|....*....|....*...
gi 1844849644 115 WNNLGVVLMERGEYGEARQVFQHAFALD 142
Cdd:pfam07719   4 LYNLGLAYYKLGDYEEALEAYEKALELD 31
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 57-162 2.29e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.14  E-value: 2.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  57 AGEYELALRAYMRATAEDGPSGAHFSAL-GSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVF 135
Cdd:TIGR02917 103 QGKFQQVLDELPGKTLLDDEGAAELLALrGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALI 182

                          90       100
                  ....*....|....*....|....*..
gi 1844849644 136 QHAFALDSGQSDSIreNLRLAIARMEN 162
Cdd:TIGR02917 183 DEVLTADPGNVDAL--LLKGDLLLSLG 207
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 82-144 2.74e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 37.58  E-value: 2.74e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1844849644  82 SALGSANLQLGRLGQAETWLRRAVEEDPDfPPSWNNLGVVLMERGEYGEARQVFQHAFALDSG 144
Cdd:COG3071   262 LALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 54-162 3.43e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 37.76  E-value: 3.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  54 LMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQ 133
Cdd:TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIA 418

                          90       100
                  ....*....|....*....|....*....
gi 1844849644 134 VFQHAFALDsgqSDSIRENLRLAIARMEN 162
Cdd:TIGR02917 419 DLETAAQLD---PELGRADLLLILSYLRS 444
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 51-109 3.57e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 36.48  E-value: 3.57e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1844849644  51 GHRLMEAGEYELALRAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDP 109
Cdd:COG5010    95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
51-110 3.83e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 35.15  E-value: 3.83e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844849644  51 GHRLMEAGEYELALrAYMRATAEDGPSGAHFSALGSANLQLGRLGQAETWLRRAVEEDPD 110
Cdd:COG3063    33 GLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 84-160 4.82e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 36.99  E-value: 4.82e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1844849644  84 LGSANLQLGRLGQAETWLRRAVEEDPDFPPSWNNLGVVLMERGEYGEARQVFQHAFALDSGQSDSireNLRLAIARM 160
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAA---RTQLGISKL 408
TPR_12 pfam13424
Tetratricopeptide repeat;
82-141 6.20e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 34.29  E-value: 6.20e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1844849644  82 SALGSANLQLGRLGQAETWLRRAVE-----EDPDFPP---SWNNLGVVLMERGEYGEARQVFQHAFAL 141
Cdd:pfam13424   7 NNLAAVLRRLGRYDEALELLEKALEiarrlLGPDHPLtatTLLNLGRLYLELGRYEEALELLERALAL 74
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 83-146 8.52e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 33.85  E-value: 8.52e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1844849644  83 ALGSANLQLGRLGQAETWLRRAVEEDPDFPPS---WNNLGVVLMERGEYGEARQVFQHAFALDSGQS 146
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPESPDAaaaLLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 115-142 9.71e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 32.80  E-value: 9.71e-03
                           10        20
                   ....*....|....*....|....*...
gi 1844849644  115 WNNLGVVLMERGEYGEARQVFQHAFALD 142
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELD 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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