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Conserved domains on  [gi|1848402564|ref|WP_172688982|]
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Ig-like domain-containing protein [Leclercia adecarboxylata]

Protein Classification

Ig-like domain-containing protein( domain architecture ID 10980281)

bacterial immunoglobulin (Ig)-like domain-containing protein may be a cell surface protein and may play a vital role in host-pathogen interactions; similar to Bacteroides fragilis putative transglutaminase-family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Big_3_3 pfam13750
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like ...
 561-717 3.80e-73

Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


:

Pssm-ID: 404614 [Multi-domain]  Cd Length: 157  Bit Score: 235.81  E-value: 3.80e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848402564 561 GNYTYEFNMKEVPEGSYNVVINAQDTFNNTGNLPYQ-TVVVDNTAPSVSIsYEGKPISKNVTVYGLENVRIQLTDALTKP 639
Cdd:pfam13750   1 GNYTYTFDLNRLPEGKYNLVLVAMDTFHNPTTLSPLqTILVDNTPPTVSI-FDGKPISDGAVVNGLENLRITLADDATKS 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1848402564 640 SLSRMTLRGGPVSDAVELSWVNLGNNLYAPNYPKIFPSLNEGETYTLTVQAKDEMNNVKESSVEFNYLPNNLVRLENL 717
Cdd:pfam13750  80 SLTSITLSGGPANDKVYLSWVSLGKGRYRLNYPRLFPSLEEGESYTLTVTAEDEQGNAKTKSVGFEYLPNNLVQVGNL 157
Big_3_2 pfam12245
Bacterial Ig-like domain; This family consists of bacterial domains with an Ig-like fold. ...
 142-265 1.63e-40

Bacterial Ig-like domain; This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


:

Pssm-ID: 403457  Cd Length: 122  Bit Score: 144.89  E-value: 1.63e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848402564 142 PPRYKSIYPSQNAGYDMVLSGPLWELGRGGSGQFSIFADGIEDASGIAKIRLVIKRSNGSVVSDNNLSYDTANKRAFYPW 221
Cdd:pfam12245   1 PPTASSLSPTQDSGYGMVTSGGVWELGLGAESQNSLRLSGIDDASGIDSAKAFVIDSDGSVYSSVNASYDLGSGTASIPW 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1848402564 222 ikDMNTQAGMPSSDLDEEFTFNFIVTDLAGNTLNIPPQRFLYDD 265
Cdd:pfam12245  81 --GSAKQSGFFPSSLDEEFTLGFEIYDKAGNKTVIPSQKFVFDS 122
DUF4165 super family cl16374
Domain of unknown function (DUF4165);
20-141 1.43e-14

Domain of unknown function (DUF4165);


The actual alignment was detected with superfamily member pfam13752:

Pssm-ID: 433454  Cd Length: 121  Bit Score: 70.83  E-value: 1.43e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848402564  20 AHAQVFSYSFTDTNKAVRNIKPATqTYLNPAGVLTLNLISGLDRYERVTVTRDSDKKVMYSSVSTKTSVADRIVAADGTE 99
Cdd:pfam13752   1 AHADLLEYGFKAPAGDQINLEPGT-GFANPSGGISFALSAGIDRKLKIAVLANGADAPVFSKASSHLLGASDRISVGGDN 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1848402564 100 YYGKDMVLPALGEGTFTVVNETLDIRQTVVSTSTYHFIVDTT 141
Cdd:pfam13752  80 YYAAEFQLPALPAGAYLVKAEILASAGAIVQTDEVPLTIDTA 121
 
Name Accession Description Interval E-value
Big_3_3 pfam13750
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like ...
 561-717 3.80e-73

Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


Pssm-ID: 404614 [Multi-domain]  Cd Length: 157  Bit Score: 235.81  E-value: 3.80e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848402564 561 GNYTYEFNMKEVPEGSYNVVINAQDTFNNTGNLPYQ-TVVVDNTAPSVSIsYEGKPISKNVTVYGLENVRIQLTDALTKP 639
Cdd:pfam13750   1 GNYTYTFDLNRLPEGKYNLVLVAMDTFHNPTTLSPLqTILVDNTPPTVSI-FDGKPISDGAVVNGLENLRITLADDATKS 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1848402564 640 SLSRMTLRGGPVSDAVELSWVNLGNNLYAPNYPKIFPSLNEGETYTLTVQAKDEMNNVKESSVEFNYLPNNLVRLENL 717
Cdd:pfam13750  80 SLTSITLSGGPANDKVYLSWVSLGKGRYRLNYPRLFPSLEEGESYTLTVTAEDEQGNAKTKSVGFEYLPNNLVQVGNL 157
Big_3_2 pfam12245
Bacterial Ig-like domain; This family consists of bacterial domains with an Ig-like fold. ...
 142-265 1.63e-40

Bacterial Ig-like domain; This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


Pssm-ID: 403457  Cd Length: 122  Bit Score: 144.89  E-value: 1.63e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848402564 142 PPRYKSIYPSQNAGYDMVLSGPLWELGRGGSGQFSIFADGIEDASGIAKIRLVIKRSNGSVVSDNNLSYDTANKRAFYPW 221
Cdd:pfam12245   1 PPTASSLSPTQDSGYGMVTSGGVWELGLGAESQNSLRLSGIDDASGIDSAKAFVIDSDGSVYSSVNASYDLGSGTASIPW 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1848402564 222 ikDMNTQAGMPSSDLDEEFTFNFIVTDLAGNTLNIPPQRFLYDD 265
Cdd:pfam12245  81 --GSAKQSGFFPSSLDEEFTLGFEIYDKAGNKTVIPSQKFVFDS 122
DUF4165 pfam13752
Domain of unknown function (DUF4165);
20-141 1.43e-14

Domain of unknown function (DUF4165);


Pssm-ID: 433454  Cd Length: 121  Bit Score: 70.83  E-value: 1.43e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848402564  20 AHAQVFSYSFTDTNKAVRNIKPATqTYLNPAGVLTLNLISGLDRYERVTVTRDSDKKVMYSSVSTKTSVADRIVAADGTE 99
Cdd:pfam13752   1 AHADLLEYGFKAPAGDQINLEPGT-GFANPSGGISFALSAGIDRKLKIAVLANGADAPVFSKASSHLLGASDRISVGGDN 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1848402564 100 YYGKDMVLPALGEGTFTVVNETLDIRQTVVSTSTYHFIVDTT 141
Cdd:pfam13752  80 YYAAEFQLPALPAGAYLVKAEILASAGAIVQTDEVPLTIDTA 121
 
Name Accession Description Interval E-value
Big_3_3 pfam13750
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like ...
 561-717 3.80e-73

Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


Pssm-ID: 404614 [Multi-domain]  Cd Length: 157  Bit Score: 235.81  E-value: 3.80e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848402564 561 GNYTYEFNMKEVPEGSYNVVINAQDTFNNTGNLPYQ-TVVVDNTAPSVSIsYEGKPISKNVTVYGLENVRIQLTDALTKP 639
Cdd:pfam13750   1 GNYTYTFDLNRLPEGKYNLVLVAMDTFHNPTTLSPLqTILVDNTPPTVSI-FDGKPISDGAVVNGLENLRITLADDATKS 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1848402564 640 SLSRMTLRGGPVSDAVELSWVNLGNNLYAPNYPKIFPSLNEGETYTLTVQAKDEMNNVKESSVEFNYLPNNLVRLENL 717
Cdd:pfam13750  80 SLTSITLSGGPANDKVYLSWVSLGKGRYRLNYPRLFPSLEEGESYTLTVTAEDEQGNAKTKSVGFEYLPNNLVQVGNL 157
Big_3_2 pfam12245
Bacterial Ig-like domain; This family consists of bacterial domains with an Ig-like fold. ...
 142-265 1.63e-40

Bacterial Ig-like domain; This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


Pssm-ID: 403457  Cd Length: 122  Bit Score: 144.89  E-value: 1.63e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848402564 142 PPRYKSIYPSQNAGYDMVLSGPLWELGRGGSGQFSIFADGIEDASGIAKIRLVIKRSNGSVVSDNNLSYDTANKRAFYPW 221
Cdd:pfam12245   1 PPTASSLSPTQDSGYGMVTSGGVWELGLGAESQNSLRLSGIDDASGIDSAKAFVIDSDGSVYSSVNASYDLGSGTASIPW 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1848402564 222 ikDMNTQAGMPSSDLDEEFTFNFIVTDLAGNTLNIPPQRFLYDD 265
Cdd:pfam12245  81 --GSAKQSGFFPSSLDEEFTLGFEIYDKAGNKTVIPSQKFVFDS 122
DUF4165 pfam13752
Domain of unknown function (DUF4165);
20-141 1.43e-14

Domain of unknown function (DUF4165);


Pssm-ID: 433454  Cd Length: 121  Bit Score: 70.83  E-value: 1.43e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848402564  20 AHAQVFSYSFTDTNKAVRNIKPATqTYLNPAGVLTLNLISGLDRYERVTVTRDSDKKVMYSSVSTKTSVADRIVAADGTE 99
Cdd:pfam13752   1 AHADLLEYGFKAPAGDQINLEPGT-GFANPSGGISFALSAGIDRKLKIAVLANGADAPVFSKASSHLLGASDRISVGGDN 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1848402564 100 YYGKDMVLPALGEGTFTVVNETLDIRQTVVSTSTYHFIVDTT 141
Cdd:pfam13752  80 YYAAEFQLPALPAGAYLVKAEILASAGAIVQTDEVPLTIDTA 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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