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Conserved domains on  [gi|1871780722|ref|WP_179967772|]
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putative holin [Mycolicibacterium monacense]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Holin_9 super family cl25208
Putative holin; This is a family of putative holins from Actinobacteria with three TM regions.
 14-91 2.12e-15

Putative holin; This is a family of putative holins from Actinobacteria with three TM regions.


The actual alignment was detected with superfamily member pfam16936:

Pssm-ID: 435667  Cd Length: 78  Bit Score: 64.36  E-value: 2.12e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1871780722 14 MLVGAAIGLVAAVTSTLLITATVRPDLVIALVVGVPGAVGVVTILCSARRWVTTLGAFILAIGPGWLGTLALIEVVNG 91
Cdd:pfam16936  1 MLIGIAVGLLAGVAATVLVTASVRPDLVIALVVGIPSVIGLLLILFSGRRWVTALGAFVLAIAPGWFGVLAAIQVASG 78
 
Name Accession Description Interval E-value
Holin_9 pfam16936
Putative holin; This is a family of putative holins from Actinobacteria with three TM regions.
 14-91 2.12e-15

Putative holin; This is a family of putative holins from Actinobacteria with three TM regions.


Pssm-ID: 435667  Cd Length: 78  Bit Score: 64.36  E-value: 2.12e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1871780722 14 MLVGAAIGLVAAVTSTLLITATVRPDLVIALVVGVPGAVGVVTILCSARRWVTTLGAFILAIGPGWLGTLALIEVVNG 91
Cdd:pfam16936  1 MLIGIAVGLLAGVAATVLVTASVRPDLVIALVVGIPSVIGLLLILFSGRRWVTALGAFVLAIAPGWFGVLAAIQVASG 78
 
Name Accession Description Interval E-value
Holin_9 pfam16936
Putative holin; This is a family of putative holins from Actinobacteria with three TM regions.
 14-91 2.12e-15

Putative holin; This is a family of putative holins from Actinobacteria with three TM regions.


Pssm-ID: 435667  Cd Length: 78  Bit Score: 64.36  E-value: 2.12e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1871780722 14 MLVGAAIGLVAAVTSTLLITATVRPDLVIALVVGVPGAVGVVTILCSARRWVTTLGAFILAIGPGWLGTLALIEVVNG 91
Cdd:pfam16936  1 MLIGIAVGLLAGVAATVLVTASVRPDLVIALVVGIPSVIGLLLILFSGRRWVTALGAFVLAIAPGWFGVLAAIQVASG 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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