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Conserved domains on  [gi|1883531201|ref|WP_181340327|]
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ferredoxin [Capillibacterium thermochitinicola]

Protein Classification

ferredoxin( domain architecture ID 10003036)

ferredoxin is an iron-sulfur protein transfering electrons in a wide variety of metabolic reactions

CATH:  3.30.70.20
Gene Ontology:  GO:0009055|GO:0005506|GO:0051539
SCOP:  4001234

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fer COG1141
Ferredoxin [Energy production and conversion];
1-62 1.33e-22

Ferredoxin [Energy production and conversion];


:

Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 81.08  E-value: 1.33e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1883531201  1 MKTKVDPELCIACGLCISMCPDIYSWDDDGKAHAIEGPVPEDQESCAEEAAENCPTSAISTE 62
Cdd:COG1141    1 MKVTVDRDTCIGCGLCVALAPEVFELDDDGKAVVLDEEVPEELEEDVREAADACPVGAITVE 62
 
Name Accession Description Interval E-value
Fer COG1141
Ferredoxin [Energy production and conversion];
1-62 1.33e-22

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 81.08  E-value: 1.33e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1883531201  1 MKTKVDPELCIACGLCISMCPDIYSWDDDGKAHAIEGPVPEDQESCAEEAAENCPTSAISTE 62
Cdd:COG1141    1 MKVTVDRDTCIGCGLCVALAPEVFELDDDGKAVVLDEEVPEELEEDVREAADACPVGAITVE 62
Fer4_13 pfam13370
4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing ...
 5-61 2.06e-15

4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteriztic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.


Pssm-ID: 433153 [Multi-domain]  Cd Length: 58  Bit Score: 62.71  E-value: 2.06e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1883531201  5 VDPELCIACGLCISMCPDIYSWDDDGKAHAI-EGPVPEDQESCAEEAAENCPTSAIST 61
Cdd:pfam13370  1 VDEDTCIDCGTCRELAPEVFKYDDDGGASFVhDQPVNEEEEDLAEEALDSCPVEAIGT 58
PRK13795 PRK13795
hypothetical protein; Provisional
 2-21 1.23e-03

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 34.58  E-value: 1.23e-03
                          10        20
                  ....*....|....*....|
gi 1883531201   2 KTKVDPELCIACGLCISMCP 21
Cdd:PRK13795  606 KISVDEEKCIHCGKCTEVCP 625
 
Name Accession Description Interval E-value
Fer COG1141
Ferredoxin [Energy production and conversion];
1-62 1.33e-22

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 81.08  E-value: 1.33e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1883531201  1 MKTKVDPELCIACGLCISMCPDIYSWDDDGKAHAIEGPVPEDQESCAEEAAENCPTSAISTE 62
Cdd:COG1141    1 MKVTVDRDTCIGCGLCVALAPEVFELDDDGKAVVLDEEVPEELEEDVREAADACPVGAITVE 62
Fer4_13 pfam13370
4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing ...
 5-61 2.06e-15

4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteriztic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.


Pssm-ID: 433153 [Multi-domain]  Cd Length: 58  Bit Score: 62.71  E-value: 2.06e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1883531201  5 VDPELCIACGLCISMCPDIYSWDDDGKAHAI-EGPVPEDQESCAEEAAENCPTSAIST 61
Cdd:pfam13370  1 VDEDTCIDCGTCRELAPEVFKYDDDGGASFVhDQPVNEEEEDLAEEALDSCPVEAIGT 58
Fer4_15 pfam13459
4Fe-4S single cluster domain;
4-60 8.97e-11

4Fe-4S single cluster domain;


Pssm-ID: 404359 [Multi-domain]  Cd Length: 66  Bit Score: 51.21  E-value: 8.97e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1883531201  4 KVDPELCIACGLCISMCPDIYSWDDDGKAHAI-------EGPVPEDQESCAEEAAENCPTSAIS 60
Cdd:pfam13459  2 EVDRDRCIGCGLCVALDPELFELDDDGKASVLlddgeigEGEVPDDDEEAAQEAARACPVDAIR 65
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 1-62 6.51e-06

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 38.92  E-value: 6.51e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1883531201  1 MKTKVDPELCIACGLCISMCP-DIYSWDDDGKAhaiegPVPEDQESCAE--EAAENCPTSAISTE 62
Cdd:COG1146    1 MMPVIDTDKCIGCGACVEVCPvDVLELDEEGKK-----ALVINPEECIGcgACELVCPVGAITVE 60
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
4-60 1.11e-05

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 40.23  E-value: 1.11e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1883531201   4 KVDPELCIACGLCISMCP-DIYSWDDDGKAHAIE------GpvpedqeSCAEEaaenCPTSAIS 60
Cdd:COG1148   492 EVDPEKCTGCGRCVEVCPyGAISIDEKGVAEVNPalckgcG-------TCAAA----CPSGAIS 544
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 1-62 7.19e-05

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 36.56  E-value: 7.19e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1883531201  1 MKTKVDPELCIACGLCISMCPDIySWDDDGKAHAIegpvpeDQESCAEEA--AENCPTSAISTE 62
Cdd:COG4231   15 MRYVIDEDKCTGCGACVKVCPAD-AIEEGDGKAVI------DPDLCIGCGscVQVCPVDAIKLE 71
PRK13795 PRK13795
hypothetical protein; Provisional
 2-21 1.23e-03

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 34.58  E-value: 1.23e-03
                          10        20
                  ....*....|....*....|
gi 1883531201   2 KTKVDPELCIACGLCISMCP 21
Cdd:PRK13795  606 KISVDEEKCIHCGKCTEVCP 625
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
1-62 3.24e-03

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 32.01  E-value: 3.24e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1883531201  1 MKTKVDPELCIACGLCISMCPdiyswdddgkAHAI---EGPVPEDQESCAE--EAAENCPTSAISTE 62
Cdd:COG2768    4 GKPYVDEEKCIGCGACVKVCP----------VGAIsieDGKAVIDPEKCIGcgACIEVCPVGAIKIE 60
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 1-60 4.21e-03

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 31.62  E-value: 4.21e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1883531201  1 MKTKVDPELCIACGLCISMCP-DIYSWDDDGKAHAIegpvPEDQESCAeEAAENCPTSAIS 60
Cdd:COG1149    4 KIPVIDEEKCIGCGLCVEVCPeGAIKLDDGGAPVVD----PDLCTGCG-ACVGVCPTGAIT 59
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 4-62 5.68e-03

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 31.56  E-value: 5.68e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1883531201  4 KVDPELCIACGLCISMCPDiyswdddgKAHAIEGPVPE-DQESCAE--EAAENCPTSAISTE 62
Cdd:COG2221   11 KIDEEKCIGCGLCVAVCPT--------GAISLDDGKLViDEEKCIGcgACIRVCPTGAIKGE 64
PRK08318 PRK08318
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;
2-33 7.03e-03

NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;


Pssm-ID: 236237 [Multi-domain]  Cd Length: 420  Bit Score: 32.61  E-value: 7.03e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1883531201   2 KTKVDPELCIACGLCISMCPD----IYSWDDDGKAH 33
Cdd:PRK08318  336 YARIDQDKCIGCGRCYIACEDtshqAIEWDEDGTRT 371
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 2-22 7.94e-03

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 31.17  E-value: 7.94e-03
                         10        20
                 ....*....|....*....|.
gi 1883531201  2 KTKVDPELCIACGLCISMCPD 22
Cdd:COG2221   38 KLVIDEEKCIGCGACIRVCPT 58
Rli1 COG1245
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ...
 8-21 8.44e-03

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440858 [Multi-domain]  Cd Length: 592  Bit Score: 32.45  E-value: 8.44e-03
                          10
                  ....*....|....
gi 1883531201   8 ELCIACGLCISMCP 21
Cdd:COG1245    49 ELCIGCGICVKKCP 62
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
8-21 9.72e-03

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 32.09  E-value: 9.72e-03
                          10
                  ....*....|....
gi 1883531201   8 ELCIACGLCISMCP 21
Cdd:PRK13409   49 ELCIGCGICVKKCP 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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