|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
109-301 |
3.29e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 103.55 E-value: 3.29e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 109 PERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLN 188
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL----DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 189 YLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGR 268
Cdd:COG0457 81 NLGLALQALG-RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
|
170 180 190
....*....|....*....|....*....|...
gi 1910237364 269 FREARFQWQRALTLSPDAELARLLRDKLANGLE 301
Cdd:COG0457 160 YEEALELLEKLEAAALAALLAAALGEAALALAA 192
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
86-293 |
3.23e-23 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 99.68 E-value: 3.23e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 86 DATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATDWRLFYARGVARE---- 161
Cdd:COG3914 9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAalll 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 162 -RLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVS 240
Cdd:COG3914 89 qALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG-RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1910237364 241 WLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLLR 293
Cdd:COG3914 168 ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
89-301 |
4.06e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 93.26 E-value: 4.06e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 89 LAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPE 168
Cdd:COG2956 19 LLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER----DPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 169 AVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEA 248
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGD-WEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1910237364 249 EPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLLRDKLANGLE 301
Cdd:COG2956 174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
41-280 |
4.27e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 93.26 E-value: 4.27e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 41 PEDGEAVLTLASLMTAQGSPELAIETLAQLPGDSSWAWDAKLATVDATLAAGRQDDAEDLLERMAAERPERTDALVKLGD 120
Cdd:COG2956 39 PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 121 LARSGERYAEAEQAYDQAIARvaAPSATDWRLFYARgvARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeN 200
Cdd:COG2956 119 IYEQEGDWEKAIEVLERLLKL--GPENAHAYCELAE--LYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG-D 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 201 LEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEhLGDAYWRTGRFREARFQWQRAL 280
Cdd:COG2956 194 YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLERKEGLEAALALLERQL 272
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
12-281 |
4.51e-22 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 96.31 E-value: 4.51e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 12 LLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIET---LAQLPGDSSWA----------- 77
Cdd:TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSfkkLLALQPDSALAlllladayavm 648
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 78 --------------------WDAKLATVDATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQ 137
Cdd:TIGR02917 649 knyakaitslkralelkpdnTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK 728
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 138 AIARV---------------------AAPSATDW--------RLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLN 188
Cdd:TIGR02917 729 ALKRApssqnaiklhrallasgntaeAVKTLEAWlkthpndaVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLN 808
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 189 YLgySWVDRGENLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGR 268
Cdd:TIGR02917 809 NL--AWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886
|
330
....*....|...
gi 1910237364 269 FREARFQWQRALT 281
Cdd:TIGR02917 887 KAEARKELDKLLN 899
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
151-285 |
6.56e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 89.10 E-value: 6.56e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 151 RLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYF 230
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-DLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1910237364 231 KIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPD 285
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
95-295 |
2.94e-21 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 89.97 E-value: 2.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 95 DDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATD-WRLFYARGVARERLGRWPEAVADF 173
Cdd:COG4785 17 AAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDlAQLYYERGVAYDSLGDYDLAIADF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 174 QRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDP 253
Cdd:COG4785 97 DQALELDPDLAEAYNNRGLAYLLLG-DYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1910237364 254 VINEHLGDAYWRTGR---FREARFQWQRALTLSPDAELARLLRDK 295
Cdd:COG4785 176 ERALWLYLAERKLDPekaLALLLEDWATAYLLQGDTEEARELFKL 220
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
56-297 |
1.16e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 89.40 E-value: 1.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 56 AQGSPELAIETLAQLPGDSSWAWDAKLATVDATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAY 135
Cdd:COG2956 20 LNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 136 DQAIARvaapSATDWRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELR 215
Cdd:COG2956 100 EKLLEL----DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG-DYDEAIEALEKALKLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 216 PRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLLRDK 295
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADL 254
|
..
gi 1910237364 296 LA 297
Cdd:COG2956 255 LE 256
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
18-259 |
3.99e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 84.66 E-value: 3.99e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 18 EALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIETLAQLpgdsswawdakLATVDATLAAGRQDDA 97
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEA-----------AAAALLALAAGEAAAA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 98 EDLLERMAAERPERTDALVKLGdlarsgeRYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPEAVADFQRAL 177
Cdd:COG3914 71 AAALLLLAALLELAALLLQALG-------RYEEALALYRRALAL----NPDNAEALFNLGNLLLALGRLEEALAALRRAL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 178 ELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINE 257
Cdd:COG3914 140 ALNPDFAEAYLNLGEALRRLG-RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS 218
|
..
gi 1910237364 258 HL 259
Cdd:COG3914 219 NL 220
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
9-249 |
5.04e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 82.08 E-value: 5.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 9 TADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIETLAQLPGDSSWAWDAKLATVDAT 88
Cdd:COG2956 41 TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIY 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 89 LAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPE 168
Cdd:COG2956 121 EQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL----DPDCARALLLLAELYLEQGDYEE 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 169 AVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGMLQKAVELRPRDGFIIdSLGWAYFKIGRLNEAVSWLDRAVEA 248
Cdd:COG2956 197 AIAALERALEQDPDYLPALPRLAELYEKLGD-PEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLRR 274
|
.
gi 1910237364 249 E 249
Cdd:COG2956 275 H 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
89-301 |
5.37e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 81.21 E-value: 5.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 89 LAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPE 168
Cdd:COG0457 19 RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----DPDDAEALNNLGLALQALGRYEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 169 AVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEA 248
Cdd:COG0457 95 ALEDYDKALELDPDDAEALYNLGLALLELG-RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAA 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1910237364 249 EPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLLRDKLANGLE 301
Cdd:COG0457 174 ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLA 226
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
3-291 |
3.12e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 82.05 E-value: 3.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 3 ASAGEGTADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMT-AQGSPELAIETLAQLPGDSSWAWDAK 81
Cdd:TIGR02917 83 LSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYlGLGQLELAQKSYEQALAIDPRSLYAK 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 82 LATVDATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIArvAAPSATDWRLF-------- 153
Cdd:TIGR02917 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIA--LRPNNIAVLLAlatiliea 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 154 ------------------------YARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQ 209
Cdd:TIGR02917 241 gefeeaekhadallkkapnsplahYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG-NLEQAYQYLN 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 210 KAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELA 289
Cdd:TIGR02917 320 QILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAA 399
|
..
gi 1910237364 290 RL 291
Cdd:TIGR02917 400 RT 401
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
168-297 |
1.98e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 68.88 E-value: 1.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 168 EAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVE 247
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLG-RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1910237364 248 AEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLLRDKLA 297
Cdd:COG4235 80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
110-252 |
5.87e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 67.52 E-value: 5.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 110 ERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNY 189
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL----DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1910237364 190 LGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGD 252
Cdd:COG4783 78 LGLALLKAG-DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
177-285 |
1.78e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.80 E-value: 1.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 177 LELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVIN 256
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLG-RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL 79
|
90 100
....*....|....*....|....*....
gi 1910237364 257 EHLGDAYWRTGRFREARFQWQRALTLSPD 285
Cdd:COG0457 80 NNLGLALQALGRYEEALEDYDKALELDPD 108
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
153-295 |
2.17e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.91 E-value: 2.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 153 FYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGMLQKAVELRPRDGFIIDSLGWAYFKI 232
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGE-YDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1910237364 233 GRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDA-----ELARLLRDK 295
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENahaycELAELYLEQ 157
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1-292 |
1.36e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 65.10 E-value: 1.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 1 VLASAGEGTADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIETL--AQlpgdsSWAW 78
Cdd:TIGR02917 13 ALSACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELrkAL-----SLGY 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 79 DAKLATVDATLAAGRQDDAEDLLERMAA----ERPERTDALVKLGDLARSGERYAEAEQAYDQAIArvAAPSATDWRLFY 154
Cdd:TIGR02917 88 PKNQVLPLLARAYLLQGKFQQVLDELPGktllDDEGAAELLALRGLAYLGLGQLELAQKSYEQALA--IDPRSLYAKLGL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 155 ARGVARErlGRWPEAVADFQRALELAPDQPLVLNYLGySWVDRGENLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGR 234
Cdd:TIGR02917 166 AQLALAE--NRFDEARALIDEVLTADPGNVDALLLKG-DLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1910237364 235 LNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLL 292
Cdd:TIGR02917 243 FEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLL 300
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
2-215 |
1.47e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.59 E-value: 1.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 2 LASAGEGTADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIETLAQLPGDSSWAWDAK 81
Cdd:COG2956 68 LLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 82 LATVDATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaAPSATDWRLFYARgvARE 161
Cdd:COG2956 148 CELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ--DPDYLPALPRLAE--LYE 223
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1910237364 162 RLGRWPEAVADFQRALELAPDQPLVLNYlgYSWVDRGENLEQALGMLQKAVELR 215
Cdd:COG2956 224 KLGDPEEALELLRKALELDPSDDLLLAL--ADLLERKEGLEAALALLERQLRRH 275
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
13-285 |
1.77e-11 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 63.78 E-value: 1.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 13 LLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAV-LTLASLMTAQGSPELAIETLAQLPGDSSWAWDAKLATVDATLAA 91
Cdd:COG3071 53 YLLAARAAQALGDYERRDEYLAQALELAPEAELAVlLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 92 GRQDDAEDLLERM---------AAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATdwrlfYARgvARER 162
Cdd:COG3071 133 GDWEELLELLPALrkhkalsaeEAQALERRAYLGLLRQAARDAEALKALWKALPRAERRDPELAAA-----YAR--ALIA 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 163 LGRWPEAVADFQRALELAPDQPLVLNYLgyswVDRGENLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWL 242
Cdd:COG3071 206 LGDHDEAERLLREALKRQWDPRLVRLYG----RLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYL 281
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1910237364 243 DRAVEAEPgDPVINEHLGDAYWRTGRFREARFQWQRALTLSPD 285
Cdd:COG3071 282 EAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
96-218 |
3.04e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.02 E-value: 3.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 96 DAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPEAVADFQR 175
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL----DPDNADALLDLAEALLAAGDTEEAEELLER 76
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1910237364 176 ALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRD 218
Cdd:COG4235 77 ALALDPDNPEALYLLGLAAFQQG-DYAEAIAAWQKLLALLPAD 118
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
200-286 |
4.19e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 58.64 E-value: 4.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 200 NLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSwLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRA 279
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
....*..
gi 1910237364 280 LTLSPDA 286
Cdd:COG3063 86 LELDPSA 92
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
79-218 |
6.15e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.44 E-value: 6.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 79 DAKLATVDATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGV 158
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL----DPDEPEARLNLGL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 159 ARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRD 218
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG-RPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
18-298 |
8.41e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 62.79 E-value: 8.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 18 EALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAI---ETLAQLPGDSSwawDAKLATVDATLAAGRQ 94
Cdd:TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIadlETAAQLDPELG---RADLLLILSYLRSGQF 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 95 DDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQA--IARVAAPSAT-------------DWRLFYARGVA 159
Cdd:TIGR02917 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAlsIEPDFFPAAAnlaridiqegnpdDAIQRFEKVLT 527
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 160 R---------------ERLGRWPEAVADFQRALELAPD--QPLVLnyLGYSWVDRGEnLEQALGMLQKAVELRPRDGFII 222
Cdd:TIGR02917 528 IdpknlrailalaglyLRTGNEEEAVAWLEKAAELNPQeiEPALA--LAQYYLGKGQ-LKKALAILNEAADAAPDSPEAW 604
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1910237364 223 DSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLLRDKLAN 298
Cdd:TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
131-284 |
2.68e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.05 E-value: 2.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 131 AEQAYDQAIARVAAPSATDWRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQK 210
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLG-DFEESLALLEQ 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1910237364 211 AVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSP 284
Cdd:COG5010 80 ALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
159-250 |
3.03e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.95 E-value: 3.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 159 ARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGmLQKAVELRPRDGFIIDSLGWAYFKIGRLNEA 238
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-RYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|..
gi 1910237364 239 VSWLDRAVEAEP 250
Cdd:COG3063 79 LAYLERALELDP 90
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
10-292 |
3.84e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.40 E-value: 3.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 10 ADLLLAIVEALRQQGAEGRAIVyarlATWAAPEDGEAVL--TLASLMTAQGSPELAIETLAQL----PGDSSWAwdAKLA 83
Cdd:TIGR02917 433 ADLLLILSYLRSGQFDKALAAA----KKLEKKQPDNASLhnLLGAIYLGKGDLAKAREAFEKAlsiePDFFPAA--ANLA 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 84 TVDatLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIAR---------------------- 141
Cdd:TIGR02917 507 RID--IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELnpqeiepalalaqyylgkgqlk 584
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 142 ---VAAPSATDW-----RLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGY-SWVDRgeNLEQALGMLQKAV 212
Cdd:TIGR02917 585 kalAILNEAADAapdspEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADaYAVMK--NYAKAITSLKRAL 662
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 213 ELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLL 292
Cdd:TIGR02917 663 ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL 742
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
97-250 |
1.00e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.43 E-value: 1.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 97 AEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATDWRLFYARGVARERLGRWPEAVADFQRA 176
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1910237364 177 LELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEP 250
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSG-DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
89-182 |
1.10e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.00 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 89 LAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPE 168
Cdd:COG4235 28 LRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL----DPDNPEALYLLGLAAFQQGDYAE 103
|
90
....*....|....
gi 1910237364 169 AVADFQRALELAPD 182
Cdd:COG4235 104 AIAAWQKLLALLPA 117
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
8-272 |
2.52e-07 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 51.84 E-value: 2.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 8 GTADLLLAIVEALRQQGAEGRAIVYARLATWAAPE-DGEAV----------------LTLASLMTAQGSPELAIETLAQL 70
Cdd:PRK09782 456 GIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTlPGVALyawlqaeqrqpdawqhRAVAYQAYQVEDYATALAAWQKI 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 71 PgDSSWAWDAKLATVDATLAAGRQDDAEDLLErMAAERPERTDALVKLgdLARSGERYAEAEQAY-DQAIARVAAPSAtd 149
Cdd:PRK09782 536 S-LHDMSNEDLLAAANTAQAAGNGAARDRWLQ-QAEQRGLGDNALYWW--LHAQRYIPGQPELALnDLTRSLNIAPSA-- 609
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 150 wRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGMLQKAVELRPRDGFIIDSLGWAY 229
Cdd:PRK09782 610 -NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-IAQSREMLERAHKGLPDDPALIRQLAYVN 687
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1910237364 230 FKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREA 272
Cdd:PRK09782 688 QRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRL 730
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
128-300 |
2.93e-07 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 50.41 E-value: 2.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 128 YAEAEQAYDQAIArvAAPSatDWRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGM 207
Cdd:TIGR02521 47 LEVAKENLDKALE--HDPD--DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK-YEQAMQQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 208 LQKAVEL----RPRDGFiiDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLS 283
Cdd:TIGR02521 122 FEQAIEDplypQPARSL--ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTY 199
|
170
....*....|....*..
gi 1910237364 284 PDAELARLLRDKLANGL 300
Cdd:TIGR02521 200 NQTAESLWLGIRIARAL 216
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
200-298 |
4.89e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 47.68 E-value: 4.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 200 NLEQALGMLQKAVELRPRDGFIIDS---LGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINE---HLGDAYWRTGRFREAR 273
Cdd:COG1729 8 DYDEAIAAFKAFLKRYPNSPLAPDAlywLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYDKAR 87
|
90 100
....*....|....*....|....*
gi 1910237364 274 FQWQRALTLSPDAELARLLRDKLAN 298
Cdd:COG1729 88 ATLEELIKKYPDSEAAKEARARLAR 112
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
151-253 |
1.19e-06 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 49.12 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 151 RLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGMLQKAVELRPRDGFIIDSLGWAYF 230
Cdd:PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGN-FDAAYEAFDSVLELDPTYNYAYLNRGIALY 143
|
90 100
....*....|....*....|...
gi 1910237364 231 KIGRLNEAVSWLDRAVEAEPGDP 253
Cdd:PRK11189 144 YGGRYELAQDDLLAFYQDDPNDP 166
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
10-204 |
2.11e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.84 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 10 ADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIEtlaqlpgdsswawdaklatvdatl 89
Cdd:COG3914 112 AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA------------------------ 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 90 aagrqddaedLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaAPSATDWRLFYARgvARERLGRWPEA 169
Cdd:COG3914 168 ----------ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL--DPDNADAHSNLLF--ALRQACDWEVY 233
|
170 180 190
....*....|....*....|....*....|....*..
gi 1910237364 170 VADFQRALELAPDQPLVLNYLGYSW--VDRGENLEQA 204
Cdd:COG3914 234 DRFEELLAALARGPSELSPFALLYLpdDDPAELLALA 270
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
59-291 |
2.70e-06 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 48.93 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 59 SPELAIE---TLAQLPGDSSWAWdAKLATVDAT---------------LAAGRQDDAEDLLERMAAERPERTDAlvklgd 120
Cdd:PRK11447 145 ELDLAVEywrLVAKLPAQRPEAI-NQLQRLNADypgntglrntlalllFSSGRRDEGFAVLEQMAKSPAGRDAA------ 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 121 larsgeryaeAEQAYDQ-AIARVAAPSATDWRLFYAR-------GVARERLGRWPEAVAD--FQRALElapdqplvlnyl 190
Cdd:PRK11447 218 ----------AQLWYGQiKDMPVSDASVAALQKYLQVfsdgdsvAAARSQLAEQQKQLADpaFRARAQ------------ 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 191 GYSWVDRGENlEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINE------------- 257
Cdd:PRK11447 276 GLAAVDSGQG-GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKwesllkvnrywll 354
|
250 260 270
....*....|....*....|....*....|....*
gi 1910237364 258 -HLGDAYWRTGRFREARFQWQRALTLSPDAELARL 291
Cdd:PRK11447 355 iQQGDAALKANNLAQAERLYQQARQVDNTDSYAVL 389
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
168-285 |
7.93e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 47.29 E-value: 7.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 168 EAVADFQRAL---ELAPDQPLVLNYLGYSWVDRGENLEqALGMLQKAVELRPRdgfiidsLGWAYFKIGRLN-------E 237
Cdd:TIGR00990 312 EAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLE-ALADLSKSIELDPR-------VTQSYIKRASMNlelgdpdK 383
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1910237364 238 AVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPD 285
Cdd:TIGR00990 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
212-293 |
8.24e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.15 E-value: 8.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 212 VELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARL 291
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
..
gi 1910237364 292 LR 293
Cdd:COG0457 81 NL 82
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
89-182 |
1.10e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.24 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 89 LAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQaYDQAIARvaapSATDWRLFYARGVARERLGRWPE 168
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL----DPNNAEALLNLAELLLELGDYDE 77
|
90
....*....|....
gi 1910237364 169 AVADFQRALELAPD 182
Cdd:COG3063 78 ALAYLERALELDPS 91
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
127-216 |
1.71e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.06 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 127 RYAEAEQAYDQAIARVAAPSATDWRLFYaRGVARERLGRWPEAVADFQRALELAPDQPLV---LNYLGYSWVDRGENlEQ 203
Cdd:COG1729 8 DYDEAIAAFKAFLKRYPNSPLAPDALYW-LGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDY-DK 85
|
90
....*....|...
gi 1910237364 204 ALGMLQKAVELRP 216
Cdd:COG1729 86 ARATLEELIKKYP 98
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
28-152 |
2.19e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.46 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 28 RAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIETLAQLPGDSSWAWDAKLATVDATLAAGRQDDAEDLLERMAAE 107
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1910237364 108 RPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaAPSATDWRL 152
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL--LPADAPARL 123
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
89-186 |
2.43e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.67 E-value: 2.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 89 LAAGRQDDAEDLLERMAAERPE---RTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATDWRLFYArGVARERLGR 165
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKL-GLSYLELGD 82
|
90 100
....*....|....*....|.
gi 1910237364 166 WPEAVADFQRALELAPDQPLV 186
Cdd:COG1729 83 YDKARATLEELIKKYPDSEAA 103
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
7-183 |
4.53e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.49 E-value: 4.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 7 EGTADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMtaqgspelaietlaqlpgdsswawdaklatvd 86
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEIL-------------------------------- 48
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 87 atLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRW 166
Cdd:COG4783 49 --LQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKL----DPEHPEAYLRLARAYRALGRP 122
|
170
....*....|....*..
gi 1910237364 167 PEAVADFQRALELAPDQ 183
Cdd:COG4783 123 DEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
10-213 |
6.44e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 43.46 E-value: 6.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 10 ADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIETLAQ---LPGDSSWAWDAKLatvD 86
Cdd:COG0457 42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKaleLDPDDAEALYNLG---L 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 87 ATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATDWRLFYARGVARERLGRW 166
Cdd:COG0457 119 ALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1910237364 167 PEAVADFQRALELAPDQPLVLNYLGYSWVDRGENLEQALGMLQKAVE 213
Cdd:COG0457 199 LLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
19-253 |
8.54e-05 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 43.92 E-value: 8.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 19 ALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAI----ETLAQLP-GDSSWAWDAKLATV-------- 85
Cdd:PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVaqfeKALALDPhSSNRDKWESLLKVNrywlliqq 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 86 -DATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATdwrlfyARGVARERLG 164
Cdd:PRK11447 358 gDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA------VRGLANLYRQ 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 165 RWPE---------------AVADFQRALELA-----PDQPLvlnylgyswvdRGENLEQALGMLQKAVELRPRDGFIIDS 224
Cdd:PRK11447 432 QSPEkalafiaslsasqrrSIDDIERSLQNDrlaqqAEALE-----------NQGKWAQAAELQRQRLALDPGSVWLTYR 500
|
250 260
....*....|....*....|....*....
gi 1910237364 225 LGWAYFKIGRLNEAVSWLDRAVEAEPGDP 253
Cdd:PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKPNDP 529
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
225-293 |
1.06e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.33 E-value: 1.06e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1910237364 225 LGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLLR 293
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
|
|
| PRK15174 |
PRK15174 |
Vi polysaccharide transport protein VexE; |
39-288 |
1.14e-04 |
|
Vi polysaccharide transport protein VexE;
Pssm-ID: 185096 [Multi-domain] Cd Length: 656 Bit Score: 43.58 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 39 AAPEDGEAVLTLASLMTAQGSPELAIETLAQLPGDSSWAWDAKLATVDATLAAGRQDDAEDLLERMAAERPERTDALVKL 118
Cdd:PRK15174 105 VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 119 GDLARSGeryaEAEQAYDQAIARVAAPSATDWRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRG 198
Cdd:PRK15174 185 LSFLNKS----RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSG 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 199 ENLEQ---ALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQ 275
Cdd:PRK15174 261 RSREAklqAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE 340
|
250
....*....|...
gi 1910237364 276 WQRALTLSPDAEL 288
Cdd:PRK15174 341 FVQLAREKGVTSK 353
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
168-248 |
1.43e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 42.62 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 168 EAVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGMLQKAVELRPRDGFIidslgwAYFKIGRL---NEAVSWLDR 244
Cdd:cd24142 18 LALKFLQRALELEPNNVEALELLGEILLELGD-VEEAREVLLRAIELDPDGGYE------KYLYLGQLsggEEALQYYEK 90
|
....
gi 1910237364 245 AVEA 248
Cdd:cd24142 91 GIEI 94
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
151-182 |
1.53e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.17 E-value: 1.53e-04
10 20 30
....*....|....*....|....*....|..
gi 1910237364 151 RLFYARGVARERLGRWPEAVADFQRALELAPD 182
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
228-297 |
1.69e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.77 E-value: 1.69e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 228 AYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARfQWQRALTLSPDAELARLLRDKLA 297
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELL 69
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
150-182 |
2.71e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 2.71e-04
10 20 30
....*....|....*....|....*....|...
gi 1910237364 150 WRLFYARGVARERLGRWPEAVADFQRALELAPD 182
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
226-267 |
2.78e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.84 E-value: 2.78e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1910237364 226 GWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTG 267
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
169-291 |
4.27e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 4.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 169 AVADFQRALELAPDQPLVLNYLGYSWVDRGENLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEA 248
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1910237364 249 EPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARL 291
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS 126
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
28-181 |
7.90e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 7.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 28 RAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIETLAQLPGDSSWAWDAKLATVDATLAAGRQDDAEDLLERMAAE 107
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1910237364 108 RPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPEAVADFQRALELAP 181
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL----SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
117-184 |
1.48e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.55 E-value: 1.48e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1910237364 117 KLGDLARSGERYAEAEQAYDQAIARVAAPSAtDWRLFYARGVARERLGRWPEAVADFQRALELAPDQP 184
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFPESPD-AAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
150-182 |
1.64e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.58 E-value: 1.64e-03
10 20 30
....*....|....*....|....*....|...
gi 1910237364 150 WRLFYARGVARERLGRWPEAVADFQRALELAPD 182
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| SirB1 |
COG2912 |
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ... |
94-184 |
1.77e-03 |
|
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];
Pssm-ID: 442156 [Multi-domain] Cd Length: 264 Bit Score: 39.04 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 94 QDDAEDLLERMAAERPERTDA----------LVKLGDLARSgeRYAEAEQaYDQAIA---RVAAPSATDWRLFYARGVAR 160
Cdd:COG2912 147 EEELEELLKGLLGPPAELEPEflapasnreiLARMLRNLKA--AYLREKD-WERALRvveRLLLLDPDDPYEIRDRGLLY 223
|
90 100
....*....|....*....|....
gi 1910237364 161 ERLGRWPEAVADFQRALELAPDQP 184
Cdd:COG2912 224 AQLGCYQAALEDLEYFLEQCPEDP 247
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
227-289 |
1.83e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.28 E-value: 1.83e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1910237364 227 WAYFKIGRLNEAVSWLDRAVEAEPGDPVINE---HLGDAYWRTGRFREARFQWQRALTLSPDAELA 289
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKA 66
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
110-182 |
3.22e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 35.83 E-value: 3.22e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1910237364 110 ERTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATDW----RLFYARGVARERLGRWPEAVADFQRALELAPD 182
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHpltaTTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
126-186 |
3.48e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 35.66 E-value: 3.48e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1910237364 126 ERYAEAEQAYDQaIARVAAPSATDWRlfyARGVARERLGRWPEAVADFQRALELAPDQPLV 186
Cdd:pfam13371 9 EDWERALAVVER-LLLLAPDDPEERR---DRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
86-182 |
6.68e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 37.17 E-value: 6.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 86 DATLAAGRQDDAEDLLERmAAERPERTDALVKLGdLARS---GERYAEAEQAYDQAIARVAAPSATDWRLFYARgvARER 162
Cdd:COG4700 97 DALLELGRYDEAIELYEE-ALTGIFADDPHILLG-LAQAlfeLGRYAEALETLEKLIAKNPDFKSSDAHLLYAR--ALEA 172
|
90 100
....*....|....*....|
gi 1910237364 163 LGRWPEAVADFQRALELAPD 182
Cdd:COG4700 173 LGDLEAAEAELEALARRYSG 192
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
163-192 |
7.16e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 33.98 E-value: 7.16e-03
10 20 30
....*....|....*....|....*....|
gi 1910237364 163 LGRWPEAVADFQRALELAPDQPLVLNYLGY 192
Cdd:pfam13414 7 QGKYEEAIEAYKKALKLDPDNPEAYYNLGL 36
|
|
|