NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1910237364|ref|WP_191062425|]
View 

tetratricopeptide repeat protein, partial [Geminicoccus harenae]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11929115)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|10517866
SCOP:  3001345

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
109-301 3.29e-26

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 103.55  E-value: 3.29e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 109 PERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLN 188
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL----DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 189 YLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGR 268
Cdd:COG0457    81 NLGLALQALG-RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1910237364 269 FREARFQWQRALTLSPDAELARLLRDKLANGLE 301
Cdd:COG0457   160 YEEALELLEKLEAAALAALLAAALGEAALALAA 192
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
10-204 2.11e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.84  E-value: 2.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  10 ADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIEtlaqlpgdsswawdaklatvdatl 89
Cdd:COG3914   112 AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA------------------------ 167
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  90 aagrqddaedLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaAPSATDWRLFYARgvARERLGRWPEA 169
Cdd:COG3914   168 ----------ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL--DPDNADAHSNLLF--ALRQACDWEVY 233
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1910237364 170 VADFQRALELAPDQPLVLNYLGYSW--VDRGENLEQA 204
Cdd:COG3914   234 DRFEELLAALARGPSELSPFALLYLpdDDPAELLALA 270
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
109-301 3.29e-26

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 103.55  E-value: 3.29e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 109 PERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLN 188
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL----DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 189 YLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGR 268
Cdd:COG0457    81 NLGLALQALG-RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1910237364 269 FREARFQWQRALTLSPDAELARLLRDKLANGLE 301
Cdd:COG0457   160 YEEALELLEKLEAAALAALLAAALGEAALALAA 192
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
12-281 4.51e-22

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 96.31  E-value: 4.51e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  12 LLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIET---LAQLPGDSSWA----------- 77
Cdd:TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSfkkLLALQPDSALAlllladayavm 648
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  78 --------------------WDAKLATVDATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQ 137
Cdd:TIGR02917 649 knyakaitslkralelkpdnTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK 728
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 138 AIARV---------------------AAPSATDW--------RLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLN 188
Cdd:TIGR02917 729 ALKRApssqnaiklhrallasgntaeAVKTLEAWlkthpndaVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLN 808
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 189 YLgySWVDRGENLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGR 268
Cdd:TIGR02917 809 NL--AWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886
                         330
                  ....*....|...
gi 1910237364 269 FREARFQWQRALT 281
Cdd:TIGR02917 887 KAEARKELDKLLN 899
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
8-272 2.52e-07

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 51.84  E-value: 2.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364   8 GTADLLLAIVEALRQQGAEGRAIVYARLATWAAPE-DGEAV----------------LTLASLMTAQGSPELAIETLAQL 70
Cdd:PRK09782  456 GIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTlPGVALyawlqaeqrqpdawqhRAVAYQAYQVEDYATALAAWQKI 535
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  71 PgDSSWAWDAKLATVDATLAAGRQDDAEDLLErMAAERPERTDALVKLgdLARSGERYAEAEQAY-DQAIARVAAPSAtd 149
Cdd:PRK09782  536 S-LHDMSNEDLLAAANTAQAAGNGAARDRWLQ-QAEQRGLGDNALYWW--LHAQRYIPGQPELALnDLTRSLNIAPSA-- 609
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 150 wRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGMLQKAVELRPRDGFIIDSLGWAY 229
Cdd:PRK09782  610 -NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-IAQSREMLERAHKGLPDDPALIRQLAYVN 687
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1910237364 230 FKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREA 272
Cdd:PRK09782  688 QRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRL 730
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
10-204 2.11e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.84  E-value: 2.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  10 ADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIEtlaqlpgdsswawdaklatvdatl 89
Cdd:COG3914   112 AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA------------------------ 167
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  90 aagrqddaedLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaAPSATDWRLFYARgvARERLGRWPEA 169
Cdd:COG3914   168 ----------ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL--DPDNADAHSNLLF--ALRQACDWEVY 233
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1910237364 170 VADFQRALELAPDQPLVLNYLGYSW--VDRGENLEQA 204
Cdd:COG3914   234 DRFEELLAALARGPSELSPFALLYLpdDDPAELLALA 270
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
168-248 1.43e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.62  E-value: 1.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 168 EAVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGMLQKAVELRPRDGFIidslgwAYFKIGRL---NEAVSWLDR 244
Cdd:cd24142    18 LALKFLQRALELEPNNVEALELLGEILLELGD-VEEAREVLLRAIELDPDGGYE------KYLYLGQLsggEEALQYYEK 90

                  ....
gi 1910237364 245 AVEA 248
Cdd:cd24142    91 GIEI 94
TPR_1 pfam00515
Tetratricopeptide repeat;
151-182 1.53e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 1.53e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1910237364 151 RLFYARGVARERLGRWPEAVADFQRALELAPD 182
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
150-182 2.71e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 2.71e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1910237364  150 WRLFYARGVARERLGRWPEAVADFQRALELAPD 182
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
109-301 3.29e-26

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 103.55  E-value: 3.29e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 109 PERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLN 188
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL----DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 189 YLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGR 268
Cdd:COG0457    81 NLGLALQALG-RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1910237364 269 FREARFQWQRALTLSPDAELARLLRDKLANGLE 301
Cdd:COG0457   160 YEEALELLEKLEAAALAALLAAALGEAALALAA 192
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
86-293 3.23e-23

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 99.68  E-value: 3.23e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  86 DATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATDWRLFYARGVARE---- 161
Cdd:COG3914     9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAalll 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 162 -RLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVS 240
Cdd:COG3914    89 qALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG-RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1910237364 241 WLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLLR 293
Cdd:COG3914   168 ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
89-301 4.06e-22

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 93.26  E-value: 4.06e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  89 LAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPE 168
Cdd:COG2956    19 LLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER----DPDRAEALLELAQDYLKAGLLDR 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 169 AVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEA 248
Cdd:COG2956    95 AEELLEKLLELDPDDAEALRLLAEIYEQEGD-WEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1910237364 249 EPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLLRDKLANGLE 301
Cdd:COG2956   174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
41-280 4.27e-22

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 93.26  E-value: 4.27e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  41 PEDGEAVLTLASLMTAQGSPELAIETLAQLPGDSSWAWDAKLATVDATLAAGRQDDAEDLLERMAAERPERTDALVKLGD 120
Cdd:COG2956    39 PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAE 118
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 121 LARSGERYAEAEQAYDQAIARvaAPSATDWRLFYARgvARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeN 200
Cdd:COG2956   119 IYEQEGDWEKAIEVLERLLKL--GPENAHAYCELAE--LYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG-D 193
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 201 LEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEhLGDAYWRTGRFREARFQWQRAL 280
Cdd:COG2956   194 YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLERKEGLEAALALLERQL 272
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
12-281 4.51e-22

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 96.31  E-value: 4.51e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  12 LLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIET---LAQLPGDSSWA----------- 77
Cdd:TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSfkkLLALQPDSALAlllladayavm 648
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  78 --------------------WDAKLATVDATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQ 137
Cdd:TIGR02917 649 knyakaitslkralelkpdnTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK 728
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 138 AIARV---------------------AAPSATDW--------RLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLN 188
Cdd:TIGR02917 729 ALKRApssqnaiklhrallasgntaeAVKTLEAWlkthpndaVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLN 808
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 189 YLgySWVDRGENLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGR 268
Cdd:TIGR02917 809 NL--AWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886
                         330
                  ....*....|...
gi 1910237364 269 FREARFQWQRALT 281
Cdd:TIGR02917 887 KAEARKELDKLLN 899
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
151-285 6.56e-22

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 89.10  E-value: 6.56e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 151 RLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYF 230
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-DLDEAIVLLHEALELDPDEPEARLNLGLALL 83
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1910237364 231 KIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPD 285
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
95-295 2.94e-21

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 89.97  E-value: 2.94e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  95 DDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATD-WRLFYARGVARERLGRWPEAVADF 173
Cdd:COG4785    17 AAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDlAQLYYERGVAYDSLGDYDLAIADF 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 174 QRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDP 253
Cdd:COG4785    97 DQALELDPDLAEAYNNRGLAYLLLG-DYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1910237364 254 VINEHLGDAYWRTGR---FREARFQWQRALTLSPDAELARLLRDK 295
Cdd:COG4785   176 ERALWLYLAERKLDPekaLALLLEDWATAYLLQGDTEEARELFKL 220
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
56-297 1.16e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 89.40  E-value: 1.16e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  56 AQGSPELAIETLAQLPGDSSWAWDAKLATVDATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAY 135
Cdd:COG2956    20 LNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 136 DQAIARvaapSATDWRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELR 215
Cdd:COG2956   100 EKLLEL----DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG-DYDEAIEALEKALKLD 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 216 PRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLLRDK 295
Cdd:COG2956   175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADL 254

                  ..
gi 1910237364 296 LA 297
Cdd:COG2956   255 LE 256
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
18-259 3.99e-18

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 84.66  E-value: 3.99e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  18 EALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIETLAQLpgdsswawdakLATVDATLAAGRQDDA 97
Cdd:COG3914     2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEA-----------AAAALLALAAGEAAAA 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  98 EDLLERMAAERPERTDALVKLGdlarsgeRYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPEAVADFQRAL 177
Cdd:COG3914    71 AAALLLLAALLELAALLLQALG-------RYEEALALYRRALAL----NPDNAEALFNLGNLLLALGRLEEALAALRRAL 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 178 ELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINE 257
Cdd:COG3914   140 ALNPDFAEAYLNLGEALRRLG-RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS 218

                  ..
gi 1910237364 258 HL 259
Cdd:COG3914   219 NL 220
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
9-249 5.04e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 82.08  E-value: 5.04e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364   9 TADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIETLAQLPGDSSWAWDAKLATVDAT 88
Cdd:COG2956    41 TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIY 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  89 LAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPE 168
Cdd:COG2956   121 EQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL----DPDCARALLLLAELYLEQGDYEE 196
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 169 AVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGMLQKAVELRPRDGFIIdSLGWAYFKIGRLNEAVSWLDRAVEA 248
Cdd:COG2956   197 AIAALERALEQDPDYLPALPRLAELYEKLGD-PEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLRR 274

                  .
gi 1910237364 249 E 249
Cdd:COG2956   275 H 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
89-301 5.37e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.21  E-value: 5.37e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  89 LAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPE 168
Cdd:COG0457    19 RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----DPDDAEALNNLGLALQALGRYEE 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 169 AVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEA 248
Cdd:COG0457    95 ALEDYDKALELDPDDAEALYNLGLALLELG-RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAA 173
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1910237364 249 EPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLLRDKLANGLE 301
Cdd:COG0457   174 ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLA 226
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
3-291 3.12e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 82.05  E-value: 3.12e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364   3 ASAGEGTADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMT-AQGSPELAIETLAQLPGDSSWAWDAK 81
Cdd:TIGR02917  83 LSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYlGLGQLELAQKSYEQALAIDPRSLYAK 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  82 LATVDATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIArvAAPSATDWRLF-------- 153
Cdd:TIGR02917 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIA--LRPNNIAVLLAlatiliea 240
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 154 ------------------------YARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQ 209
Cdd:TIGR02917 241 gefeeaekhadallkkapnsplahYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG-NLEQAYQYLN 319
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 210 KAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELA 289
Cdd:TIGR02917 320 QILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAA 399

                  ..
gi 1910237364 290 RL 291
Cdd:TIGR02917 400 RT 401
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
168-297 1.98e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 68.88  E-value: 1.98e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 168 EAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVE 247
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLG-RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1910237364 248 AEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLLRDKLA 297
Cdd:COG4235    80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
110-252 5.87e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 67.52  E-value: 5.87e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 110 ERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNY 189
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALEL----DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1910237364 190 LGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGD 252
Cdd:COG4783    78 LGLALLKAG-DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
177-285 1.78e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.80  E-value: 1.78e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 177 LELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVIN 256
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLG-RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL 79
                          90       100
                  ....*....|....*....|....*....
gi 1910237364 257 EHLGDAYWRTGRFREARFQWQRALTLSPD 285
Cdd:COG0457    80 NNLGLALQALGRYEEALEDYDKALELDPD 108
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
153-295 2.17e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 65.91  E-value: 2.17e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 153 FYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGMLQKAVELRPRDGFIIDSLGWAYFKI 232
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGE-YDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1910237364 233 GRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDA-----ELARLLRDK 295
Cdd:COG2956    90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENahaycELAELYLEQ 157
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
1-292 1.36e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 65.10  E-value: 1.36e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364   1 VLASAGEGTADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIETL--AQlpgdsSWAW 78
Cdd:TIGR02917  13 ALSACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELrkAL-----SLGY 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  79 DAKLATVDATLAAGRQDDAEDLLERMAA----ERPERTDALVKLGDLARSGERYAEAEQAYDQAIArvAAPSATDWRLFY 154
Cdd:TIGR02917  88 PKNQVLPLLARAYLLQGKFQQVLDELPGktllDDEGAAELLALRGLAYLGLGQLELAQKSYEQALA--IDPRSLYAKLGL 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 155 ARGVARErlGRWPEAVADFQRALELAPDQPLVLNYLGySWVDRGENLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGR 234
Cdd:TIGR02917 166 AQLALAE--NRFDEARALIDEVLTADPGNVDALLLKG-DLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1910237364 235 LNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLL 292
Cdd:TIGR02917 243 FEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLL 300
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
2-215 1.47e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.59  E-value: 1.47e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364   2 LASAGEGTADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIETLAQLPGDSSWAWDAK 81
Cdd:COG2956    68 LLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  82 LATVDATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaAPSATDWRLFYARgvARE 161
Cdd:COG2956   148 CELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ--DPDYLPALPRLAE--LYE 223
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1910237364 162 RLGRWPEAVADFQRALELAPDQPLVLNYlgYSWVDRGENLEQALGMLQKAVELR 215
Cdd:COG2956   224 KLGDPEEALELLRKALELDPSDDLLLAL--ADLLERKEGLEAALALLERQLRRH 275
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
13-285 1.77e-11

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 63.78  E-value: 1.77e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  13 LLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAV-LTLASLMTAQGSPELAIETLAQLPGDSSWAWDAKLATVDATLAA 91
Cdd:COG3071    53 YLLAARAAQALGDYERRDEYLAQALELAPEAELAVlLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQL 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  92 GRQDDAEDLLERM---------AAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATdwrlfYARgvARER 162
Cdd:COG3071   133 GDWEELLELLPALrkhkalsaeEAQALERRAYLGLLRQAARDAEALKALWKALPRAERRDPELAAA-----YAR--ALIA 205
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 163 LGRWPEAVADFQRALELAPDQPLVLNYLgyswVDRGENLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWL 242
Cdd:COG3071   206 LGDHDEAERLLREALKRQWDPRLVRLYG----RLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYL 281
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1910237364 243 DRAVEAEPgDPVINEHLGDAYWRTGRFREARFQWQRALTLSPD 285
Cdd:COG3071   282 EAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
96-218 3.04e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.02  E-value: 3.04e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  96 DAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPEAVADFQR 175
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL----DPDNADALLDLAEALLAAGDTEEAEELLER 76
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1910237364 176 ALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRD 218
Cdd:COG4235    77 ALALDPDNPEALYLLGLAAFQQG-DYAEAIAAWQKLLALLPAD 118
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
200-286 4.19e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 58.64  E-value: 4.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 200 NLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSwLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRA 279
Cdd:COG3063     7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85

                  ....*..
gi 1910237364 280 LTLSPDA 286
Cdd:COG3063    86 LELDPSA 92
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
79-218 6.15e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.44  E-value: 6.15e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  79 DAKLATVDATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGV 158
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL----DPDEPEARLNLGL 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 159 ARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRD 218
Cdd:COG4783    81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG-RPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
18-298 8.41e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.79  E-value: 8.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  18 EALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAI---ETLAQLPGDSSwawDAKLATVDATLAAGRQ 94
Cdd:TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIadlETAAQLDPELG---RADLLLILSYLRSGQF 447
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  95 DDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQA--IARVAAPSAT-------------DWRLFYARGVA 159
Cdd:TIGR02917 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAlsIEPDFFPAAAnlaridiqegnpdDAIQRFEKVLT 527
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 160 R---------------ERLGRWPEAVADFQRALELAPD--QPLVLnyLGYSWVDRGEnLEQALGMLQKAVELRPRDGFII 222
Cdd:TIGR02917 528 IdpknlrailalaglyLRTGNEEEAVAWLEKAAELNPQeiEPALA--LAQYYLGKGQ-LKKALAILNEAADAAPDSPEAW 604
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1910237364 223 DSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLLRDKLAN 298
Cdd:TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
131-284 2.68e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 58.05  E-value: 2.68e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 131 AEQAYDQAIARVAAPSATDWRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQK 210
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLG-DFEESLALLEQ 79
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1910237364 211 AVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSP 284
Cdd:COG5010    80 ALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
159-250 3.03e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.95  E-value: 3.03e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 159 ARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGeNLEQALGmLQKAVELRPRDGFIIDSLGWAYFKIGRLNEA 238
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-RYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78
                          90
                  ....*....|..
gi 1910237364 239 VSWLDRAVEAEP 250
Cdd:COG3063    79 LAYLERALELDP 90
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
10-292 3.84e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 57.40  E-value: 3.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  10 ADLLLAIVEALRQQGAEGRAIVyarlATWAAPEDGEAVL--TLASLMTAQGSPELAIETLAQL----PGDSSWAwdAKLA 83
Cdd:TIGR02917 433 ADLLLILSYLRSGQFDKALAAA----KKLEKKQPDNASLhnLLGAIYLGKGDLAKAREAFEKAlsiePDFFPAA--ANLA 506
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  84 TVDatLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIAR---------------------- 141
Cdd:TIGR02917 507 RID--IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELnpqeiepalalaqyylgkgqlk 584
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 142 ---VAAPSATDW-----RLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGY-SWVDRgeNLEQALGMLQKAV 212
Cdd:TIGR02917 585 kalAILNEAADAapdspEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADaYAVMK--NYAKAITSLKRAL 662
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 213 ELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLL 292
Cdd:TIGR02917 663 ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL 742
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
97-250 1.00e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.43  E-value: 1.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  97 AEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATDWRLFYARGVARERLGRWPEAVADFQRA 176
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1910237364 177 LELAPDQPLVLNYLGYSWVDRGeNLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEP 250
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSG-DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
89-182 1.10e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.00  E-value: 1.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  89 LAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPE 168
Cdd:COG4235    28 LRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL----DPDNPEALYLLGLAAFQQGDYAE 103
                          90
                  ....*....|....
gi 1910237364 169 AVADFQRALELAPD 182
Cdd:COG4235   104 AIAAWQKLLALLPA 117
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
8-272 2.52e-07

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 51.84  E-value: 2.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364   8 GTADLLLAIVEALRQQGAEGRAIVYARLATWAAPE-DGEAV----------------LTLASLMTAQGSPELAIETLAQL 70
Cdd:PRK09782  456 GIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTlPGVALyawlqaeqrqpdawqhRAVAYQAYQVEDYATALAAWQKI 535
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  71 PgDSSWAWDAKLATVDATLAAGRQDDAEDLLErMAAERPERTDALVKLgdLARSGERYAEAEQAY-DQAIARVAAPSAtd 149
Cdd:PRK09782  536 S-LHDMSNEDLLAAANTAQAAGNGAARDRWLQ-QAEQRGLGDNALYWW--LHAQRYIPGQPELALnDLTRSLNIAPSA-- 609
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 150 wRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGMLQKAVELRPRDGFIIDSLGWAY 229
Cdd:PRK09782  610 -NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-IAQSREMLERAHKGLPDDPALIRQLAYVN 687
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1910237364 230 FKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREA 272
Cdd:PRK09782  688 QRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRL 730
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
128-300 2.93e-07

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 50.41  E-value: 2.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 128 YAEAEQAYDQAIArvAAPSatDWRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGM 207
Cdd:TIGR02521  47 LEVAKENLDKALE--HDPD--DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK-YEQAMQQ 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 208 LQKAVEL----RPRDGFiiDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLS 283
Cdd:TIGR02521 122 FEQAIEDplypQPARSL--ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTY 199
                         170
                  ....*....|....*..
gi 1910237364 284 PDAELARLLRDKLANGL 300
Cdd:TIGR02521 200 NQTAESLWLGIRIARAL 216
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
200-298 4.89e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 47.68  E-value: 4.89e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 200 NLEQALGMLQKAVELRPRDGFIIDS---LGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINE---HLGDAYWRTGRFREAR 273
Cdd:COG1729     8 DYDEAIAAFKAFLKRYPNSPLAPDAlywLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYDKAR 87
                          90       100
                  ....*....|....*....|....*
gi 1910237364 274 FQWQRALTLSPDAELARLLRDKLAN 298
Cdd:COG1729    88 ATLEELIKKYPDSEAAKEARARLAR 112
PRK11189 PRK11189
lipoprotein NlpI; Provisional
151-253 1.19e-06

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 49.12  E-value: 1.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 151 RLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGMLQKAVELRPRDGFIIDSLGWAYF 230
Cdd:PRK11189   65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGN-FDAAYEAFDSVLELDPTYNYAYLNRGIALY 143
                          90       100
                  ....*....|....*....|...
gi 1910237364 231 KIGRLNEAVSWLDRAVEAEPGDP 253
Cdd:PRK11189  144 YGGRYELAQDDLLAFYQDDPNDP 166
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
10-204 2.11e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.84  E-value: 2.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  10 ADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIEtlaqlpgdsswawdaklatvdatl 89
Cdd:COG3914   112 AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA------------------------ 167
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  90 aagrqddaedLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaAPSATDWRLFYARgvARERLGRWPEA 169
Cdd:COG3914   168 ----------ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL--DPDNADAHSNLLF--ALRQACDWEVY 233
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1910237364 170 VADFQRALELAPDQPLVLNYLGYSW--VDRGENLEQA 204
Cdd:COG3914   234 DRFEELLAALARGPSELSPFALLYLpdDDPAELLALA 270
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
59-291 2.70e-06

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 48.93  E-value: 2.70e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364   59 SPELAIE---TLAQLPGDSSWAWdAKLATVDAT---------------LAAGRQDDAEDLLERMAAERPERTDAlvklgd 120
Cdd:PRK11447   145 ELDLAVEywrLVAKLPAQRPEAI-NQLQRLNADypgntglrntlalllFSSGRRDEGFAVLEQMAKSPAGRDAA------ 217
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  121 larsgeryaeAEQAYDQ-AIARVAAPSATDWRLFYAR-------GVARERLGRWPEAVAD--FQRALElapdqplvlnyl 190
Cdd:PRK11447   218 ----------AQLWYGQiKDMPVSDASVAALQKYLQVfsdgdsvAAARSQLAEQQKQLADpaFRARAQ------------ 275
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  191 GYSWVDRGENlEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINE------------- 257
Cdd:PRK11447   276 GLAAVDSGQG-GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKwesllkvnrywll 354
                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1910237364  258 -HLGDAYWRTGRFREARFQWQRALTLSPDAELARL 291
Cdd:PRK11447   355 iQQGDAALKANNLAQAERLYQQARQVDNTDSYAVL 389
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
168-285 7.93e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 47.29  E-value: 7.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 168 EAVADFQRAL---ELAPDQPLVLNYLGYSWVDRGENLEqALGMLQKAVELRPRdgfiidsLGWAYFKIGRLN-------E 237
Cdd:TIGR00990 312 EAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLE-ALADLSKSIELDPR-------VTQSYIKRASMNlelgdpdK 383
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1910237364 238 AVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPD 285
Cdd:TIGR00990 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
212-293 8.24e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.15  E-value: 8.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 212 VELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARL 291
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                  ..
gi 1910237364 292 LR 293
Cdd:COG0457    81 NL 82
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
89-182 1.10e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 1.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  89 LAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQaYDQAIARvaapSATDWRLFYARGVARERLGRWPE 168
Cdd:COG3063     3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL----DPNNAEALLNLAELLLELGDYDE 77
                          90
                  ....*....|....
gi 1910237364 169 AVADFQRALELAPD 182
Cdd:COG3063    78 ALAYLERALELDPS 91
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
127-216 1.71e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.06  E-value: 1.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 127 RYAEAEQAYDQAIARVAAPSATDWRLFYaRGVARERLGRWPEAVADFQRALELAPDQPLV---LNYLGYSWVDRGENlEQ 203
Cdd:COG1729     8 DYDEAIAAFKAFLKRYPNSPLAPDALYW-LGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDY-DK 85
                          90
                  ....*....|...
gi 1910237364 204 ALGMLQKAVELRP 216
Cdd:COG1729    86 ARATLEELIKKYP 98
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
28-152 2.19e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.46  E-value: 2.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  28 RAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIETLAQLPGDSSWAWDAKLATVDATLAAGRQDDAEDLLERMAAE 107
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1910237364 108 RPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaAPSATDWRL 152
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL--LPADAPARL 123
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
89-186 2.43e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.67  E-value: 2.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  89 LAAGRQDDAEDLLERMAAERPE---RTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATDWRLFYArGVARERLGR 165
Cdd:COG1729     4 LKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKL-GLSYLELGD 82
                          90       100
                  ....*....|....*....|.
gi 1910237364 166 WPEAVADFQRALELAPDQPLV 186
Cdd:COG1729    83 YDKARATLEELIKKYPDSEAA 103
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
7-183 4.53e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.49  E-value: 4.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364   7 EGTADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMtaqgspelaietlaqlpgdsswawdaklatvd 86
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEIL-------------------------------- 48
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  87 atLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRW 166
Cdd:COG4783    49 --LQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKL----DPEHPEAYLRLARAYRALGRP 122
                         170
                  ....*....|....*..
gi 1910237364 167 PEAVADFQRALELAPDQ 183
Cdd:COG4783   123 DEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
10-213 6.44e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.46  E-value: 6.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  10 ADLLLAIVEALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIETLAQ---LPGDSSWAWDAKLatvD 86
Cdd:COG0457    42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKaleLDPDDAEALYNLG---L 118
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  87 ATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATDWRLFYARGVARERLGRW 166
Cdd:COG0457   119 ALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1910237364 167 PEAVADFQRALELAPDQPLVLNYLGYSWVDRGENLEQALGMLQKAVE 213
Cdd:COG0457   199 LLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
19-253 8.54e-05

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.92  E-value: 8.54e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364   19 ALRQQGAEGRAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAI----ETLAQLP-GDSSWAWDAKLATV-------- 85
Cdd:PRK11447   278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVaqfeKALALDPhSSNRDKWESLLKVNrywlliqq 357
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364   86 -DATLAAGRQDDAEDLLERMAAERPERTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATdwrlfyARGVARERLG 164
Cdd:PRK11447   358 gDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA------VRGLANLYRQ 431
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  165 RWPE---------------AVADFQRALELA-----PDQPLvlnylgyswvdRGENLEQALGMLQKAVELRPRDGFIIDS 224
Cdd:PRK11447   432 QSPEkalafiaslsasqrrSIDDIERSLQNDrlaqqAEALE-----------NQGKWAQAAELQRQRLALDPGSVWLTYR 500
                          250       260
                   ....*....|....*....|....*....
gi 1910237364  225 LGWAYFKIGRLNEAVSWLDRAVEAEPGDP 253
Cdd:PRK11447   501 LAQDLRQAGQRSQADALMRRLAQQKPNDP 529
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
225-293 1.06e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.33  E-value: 1.06e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1910237364 225 LGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARLLR 293
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
PRK15174 PRK15174
Vi polysaccharide transport protein VexE;
39-288 1.14e-04

Vi polysaccharide transport protein VexE;


Pssm-ID: 185096 [Multi-domain]  Cd Length: 656  Bit Score: 43.58  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  39 AAPEDGEAVLTLASLMTAQGSPELAIETLAQLPGDSSWAWDAKLATVDATLAAGRQDDAEDLLERMAAERPERTDALVKL 118
Cdd:PRK15174  105 VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC 184
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 119 GDLARSGeryaEAEQAYDQAIARVAAPSATDWRLFYARGVARERLGRWPEAVADFQRALELAPDQPLVLNYLGYSWVDRG 198
Cdd:PRK15174  185 LSFLNKS----RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSG 260
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 199 ENLEQ---ALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARFQ 275
Cdd:PRK15174  261 RSREAklqAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE 340
                         250
                  ....*....|...
gi 1910237364 276 WQRALTLSPDAEL 288
Cdd:PRK15174  341 FVQLAREKGVTSK 353
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
168-248 1.43e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.62  E-value: 1.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 168 EAVADFQRALELAPDQPLVLNYLGYSWVDRGEnLEQALGMLQKAVELRPRDGFIidslgwAYFKIGRL---NEAVSWLDR 244
Cdd:cd24142    18 LALKFLQRALELEPNNVEALELLGEILLELGD-VEEAREVLLRAIELDPDGGYE------KYLYLGQLsggEEALQYYEK 90

                  ....
gi 1910237364 245 AVEA 248
Cdd:cd24142    91 GIEI 94
TPR_1 pfam00515
Tetratricopeptide repeat;
151-182 1.53e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 1.53e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1910237364 151 RLFYARGVARERLGRWPEAVADFQRALELAPD 182
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
228-297 1.69e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.77  E-value: 1.69e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 228 AYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTGRFREARfQWQRALTLSPDAELARLLRDKLA 297
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELL 69
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
150-182 2.71e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 2.71e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1910237364  150 WRLFYARGVARERLGRWPEAVADFQRALELAPD 182
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_11 pfam13414
TPR repeat;
226-267 2.78e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.84  E-value: 2.78e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1910237364 226 GWAYFKIGRLNEAVSWLDRAVEAEPGDPVINEHLGDAYWRTG 267
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
169-291 4.27e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.94  E-value: 4.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364 169 AVADFQRALELAPDQPLVLNYLGYSWVDRGENLEQALGMLQKAVELRPRDGFIIDSLGWAYFKIGRLNEAVSWLDRAVEA 248
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1910237364 249 EPGDPVINEHLGDAYWRTGRFREARFQWQRALTLSPDAELARL 291
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS 126
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
28-181 7.90e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 7.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  28 RAIVYARLATWAAPEDGEAVLTLASLMTAQGSPELAIETLAQLPGDSSWAWDAKLATVDATLAAGRQDDAEDLLERMAAE 107
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1910237364 108 RPERTDALVKLGDLARSGERYAEAEQAYDQAIARvaapSATDWRLFYARGVARERLGRWPEAVADFQRALELAP 181
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL----SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
117-184 1.48e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.55  E-value: 1.48e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1910237364 117 KLGDLARSGERYAEAEQAYDQAIARVAAPSAtDWRLFYARGVARERLGRWPEAVADFQRALELAPDQP 184
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPESPD-AAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
150-182 1.64e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.58  E-value: 1.64e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1910237364 150 WRLFYARGVARERLGRWPEAVADFQRALELAPD 182
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
SirB1 COG2912
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ...
94-184 1.77e-03

Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];


Pssm-ID: 442156 [Multi-domain]  Cd Length: 264  Bit Score: 39.04  E-value: 1.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  94 QDDAEDLLERMAAERPERTDA----------LVKLGDLARSgeRYAEAEQaYDQAIA---RVAAPSATDWRLFYARGVAR 160
Cdd:COG2912   147 EEELEELLKGLLGPPAELEPEflapasnreiLARMLRNLKA--AYLREKD-WERALRvveRLLLLDPDDPYEIRDRGLLY 223
                          90       100
                  ....*....|....*....|....
gi 1910237364 161 ERLGRWPEAVADFQRALELAPDQP 184
Cdd:COG2912   224 AQLGCYQAALEDLEYFLEQCPEDP 247
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
227-289 1.83e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.28  E-value: 1.83e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1910237364 227 WAYFKIGRLNEAVSWLDRAVEAEPGDPVINE---HLGDAYWRTGRFREARFQWQRALTLSPDAELA 289
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKA 66
TPR_12 pfam13424
Tetratricopeptide repeat;
110-182 3.22e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.83  E-value: 3.22e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1910237364 110 ERTDALVKLGDLARSGERYAEAEQAYDQAIARVAAPSATDW----RLFYARGVARERLGRWPEAVADFQRALELAPD 182
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHpltaTTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_9 pfam13371
Tetratricopeptide repeat;
126-186 3.48e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 35.66  E-value: 3.48e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1910237364 126 ERYAEAEQAYDQaIARVAAPSATDWRlfyARGVARERLGRWPEAVADFQRALELAPDQPLV 186
Cdd:pfam13371   9 EDWERALAVVER-LLLLAPDDPEERR---DRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
86-182 6.68e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 37.17  E-value: 6.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910237364  86 DATLAAGRQDDAEDLLERmAAERPERTDALVKLGdLARS---GERYAEAEQAYDQAIARVAAPSATDWRLFYARgvARER 162
Cdd:COG4700    97 DALLELGRYDEAIELYEE-ALTGIFADDPHILLG-LAQAlfeLGRYAEALETLEKLIAKNPDFKSSDAHLLYAR--ALEA 172
                          90       100
                  ....*....|....*....|
gi 1910237364 163 LGRWPEAVADFQRALELAPD 182
Cdd:COG4700   173 LGDLEAAEAELEALARRYSG 192
TPR_11 pfam13414
TPR repeat;
163-192 7.16e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 33.98  E-value: 7.16e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1910237364 163 LGRWPEAVADFQRALELAPDQPLVLNYLGY 192
Cdd:pfam13414   7 QGKYEEAIEAYKKALKLDPDNPEAYYNLGL 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH