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Conserved domains on  [gi|1957293378|ref|WP_200781911|]
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InlB B-repeat-containing protein, partial [Peptococcus niger]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
51-348 8.67e-32

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 128.51  E-value: 8.67e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378  51 STKFDKDNNGKLSDTEIAHITSIsvTSENIADLKGIEYFTALQTLNCAYNQLRSL--DISKNTALKVLNCHDNKLTNL-- 126
Cdd:COG4886    76 LLSLLLLSLLLLGLTDLGDLTNL--TELDLSGNEELSNLTNLESLDLSGNQLTDLpeELANLTNLKELDLSNNQLTDLpe 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 127 DLSKNTALETLKCSVNQLTNLD--VSKNPALISLTCFSSQLTNL--DVSKNTALKELLCDGNQLRKL--DVSKNTALQRL 200
Cdd:COG4886   154 PLGNLTNLKSLDLSNNQLTDLPeeLGNLTNLKELDLSNNQITDLpePLGNLTNLEELDLSGNQLTDLpePLANLTNLETL 233

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 201 ECWENQLTSL-DVSKNTALKKLWCKSNQLTKLDVSKN-TKLQGLNCNSNQLTSLDVSKNRELVHLNCMENQLTSLDLSHN 278
Cdd:COG4886   234 DLSNNQLTDLpELGNLTNLEELDLSNNQLTDLPPLANlTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLEL 313

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 279 IAGSRLKCNAQKYDVEIRTTDMKIPYADFPGTFDITKAGYIVGADSNFKVDLTKPSTVTYNYYTGSDTIL 348
Cdd:COG4886   314 LILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLA 383
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 440-505 3.19e-22

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


:

Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 90.38  E-value: 3.19e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1957293378 440 YTVTFNTNGGSaiNPQTITAGGLVTKPAAPTKDGYTFAGWYKDAEFTKAFDF-ANETINADTTIYAK 505
Cdd:pfam09479   1 YTVTFDANGGT--VSQTVTYGTTITLPADPTKEGYTFAGWYTDSDGTTKYTFgTDVTPTGDITLYAK 65
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 366-431 7.11e-17

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


:

Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 75.36  E-value: 7.11e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1957293378 366 YIVRFDTNGGTevSVQIIKQGDHVTIPTAPTKDGFTFAGWYKDAGLTTPFDVETE-TINADITLYAK 431
Cdd:pfam09479   1 YTVTFDANGGT--VSQTVTYGTTITLPADPTKEGYTFAGWYTDSDGTTKYTFGTDvTPTGDITLYAK 65
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 518-583 1.11e-05

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


:

Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 43.39  E-value: 1.11e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1957293378 518 FTITFDKNGGTgimADVTVNKGETYTLPdckfAAP--EGKTFKAW---EVDGTEKAVGDSIKVNANTTVKA 583
Cdd:pfam09479   1 YTVTFDANGGT---VSQTVTYGTTITLP----ADPtkEGYTFAGWytdSDGTTKYTFGTDVTPTGDITLYA 64
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
51-348 8.67e-32

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 128.51  E-value: 8.67e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378  51 STKFDKDNNGKLSDTEIAHITSIsvTSENIADLKGIEYFTALQTLNCAYNQLRSL--DISKNTALKVLNCHDNKLTNL-- 126
Cdd:COG4886    76 LLSLLLLSLLLLGLTDLGDLTNL--TELDLSGNEELSNLTNLESLDLSGNQLTDLpeELANLTNLKELDLSNNQLTDLpe 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 127 DLSKNTALETLKCSVNQLTNLD--VSKNPALISLTCFSSQLTNL--DVSKNTALKELLCDGNQLRKL--DVSKNTALQRL 200
Cdd:COG4886   154 PLGNLTNLKSLDLSNNQLTDLPeeLGNLTNLKELDLSNNQITDLpePLGNLTNLEELDLSGNQLTDLpePLANLTNLETL 233

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 201 ECWENQLTSL-DVSKNTALKKLWCKSNQLTKLDVSKN-TKLQGLNCNSNQLTSLDVSKNRELVHLNCMENQLTSLDLSHN 278
Cdd:COG4886   234 DLSNNQLTDLpELGNLTNLEELDLSNNQLTDLPPLANlTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLEL 313

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 279 IAGSRLKCNAQKYDVEIRTTDMKIPYADFPGTFDITKAGYIVGADSNFKVDLTKPSTVTYNYYTGSDTIL 348
Cdd:COG4886   314 LILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLA 383
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 440-505 3.19e-22

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 90.38  E-value: 3.19e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1957293378 440 YTVTFNTNGGSaiNPQTITAGGLVTKPAAPTKDGYTFAGWYKDAEFTKAFDF-ANETINADTTIYAK 505
Cdd:pfam09479   1 YTVTFDANGGT--VSQTVTYGTTITLPADPTKEGYTFAGWYTDSDGTTKYTFgTDVTPTGDITLYAK 65
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 366-431 7.11e-17

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 75.36  E-value: 7.11e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1957293378 366 YIVRFDTNGGTevSVQIIKQGDHVTIPTAPTKDGFTFAGWYKDAGLTTPFDVETE-TINADITLYAK 431
Cdd:pfam09479   1 YTVTFDANGGT--VSQTVTYGTTITLPADPTKEGYTFAGWYTDSDGTTKYTFGTDvTPTGDITLYAK 65
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
92-273 9.61e-11

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 65.10  E-value: 9.61e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378  92 LQTLNCAYNQLRSLDISKNTALKVLNCHDNKLTNLDLSKNTALETLKCSVNQLTNLDVSKNPALISLTCFSSQLTNLDVS 171
Cdd:PRK15370  222 IKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAH 301

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 172 KNTALKELLCDGNQLRKLDVSKNTALQRLECWENQLTSLDVSKNTALKKLWCKSNQLTKLDVSKNTKLQGLNCNSNQLTS 251
Cdd:PRK15370  302 LPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN 381

                         170       180
                  ....*....|....*....|..
gi 1957293378 252 LDVSKNRELVHLNCMENQLTSL 273
Cdd:PRK15370  382 LPENLPAALQIMQASRNNLVRL 403
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 105-291 7.24e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 56.72  E-value: 7.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 105 LDISKNtaLKVLNCHDNKLTNLD-LSKNTALETLKCSVNQLT---NLDvsknpaliSLTCfssqLTNLDVSKN--TALKE 178
Cdd:cd21340    20 LSLCKN--LKVLYLYDNKITKIEnLEFLTNLTHLYLQNNQIEkieNLE--------NLVN----LKKLYLGGNriSVVEG 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 179 L-LCDgnQLRKLDVSKntalQRLECwENQLTsLDVSKNTALkklwckSNQLTKLDVSKN--TKLQGLNCNSNqLTSLDVS 255
Cdd:cd21340    86 LeNLT--NLEELHIEN----QRLPP-GEKLT-FDPRSLAAL------SNSLRVLNISGNniDSLEPLAPLRN-LEQLDAS 150

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1957293378 256 KNR-----ELVH-LNCMeNQLTSLDLSHNIAgsrlkCNAQKY 291
Cdd:cd21340   151 NNQisdleELLDlLSSW-PSLRELDLTGNPV-----CKKPKY 186
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 395-434 4.11e-08

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 49.54  E-value: 4.11e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1957293378 395 PTKDGFTFAGWYKDAGLTTPFDVE-TETINADITLYAKWTP 434
Cdd:TIGR02543   1 PTKTGYTFVGWTGDSTGTPVKNFTiPSGSTGDLTLYAKWTP 41
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 469-510 1.16e-07

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 48.39  E-value: 1.16e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1957293378 469 PTKDGYTFAGWYKDAEFTKAFDFaneTI----NADTTIYAKWTQNA 510
Cdd:TIGR02543   1 PTKTGYTFVGWTGDSTGTPVKNF---TIpsgsTGDLTLYAKWTPNT 43
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 518-583 1.11e-05

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 43.39  E-value: 1.11e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1957293378 518 FTITFDKNGGTgimADVTVNKGETYTLPdckfAAP--EGKTFKAW---EVDGTEKAVGDSIKVNANTTVKA 583
Cdd:pfam09479   1 YTVTFDANGGT---VSQTVTYGTTITLP----ADPtkEGYTFAGWytdSDGTTKYTFGTDVTPTGDITLYA 64
LRR_8 pfam13855
Leucine rich repeat;
206-278 3.43e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.04  E-value: 3.43e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1957293378 206 QLTSLDVSkntalkklwckSNQLTKLDVS---KNTKLQGLNCNSNQLTSLDvskNRELVHLNcmenQLTSLDLSHN 278
Cdd:pfam13855   2 NLRSLDLS-----------NNRLTSLDDGafkGLSNLKVLDLSNNLLTTLS---PGAFSGLP----SLRYLDLSGN 59
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
51-348 8.67e-32

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 128.51  E-value: 8.67e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378  51 STKFDKDNNGKLSDTEIAHITSIsvTSENIADLKGIEYFTALQTLNCAYNQLRSL--DISKNTALKVLNCHDNKLTNL-- 126
Cdd:COG4886    76 LLSLLLLSLLLLGLTDLGDLTNL--TELDLSGNEELSNLTNLESLDLSGNQLTDLpeELANLTNLKELDLSNNQLTDLpe 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 127 DLSKNTALETLKCSVNQLTNLD--VSKNPALISLTCFSSQLTNL--DVSKNTALKELLCDGNQLRKL--DVSKNTALQRL 200
Cdd:COG4886   154 PLGNLTNLKSLDLSNNQLTDLPeeLGNLTNLKELDLSNNQITDLpePLGNLTNLEELDLSGNQLTDLpePLANLTNLETL 233

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 201 ECWENQLTSL-DVSKNTALKKLWCKSNQLTKLDVSKN-TKLQGLNCNSNQLTSLDVSKNRELVHLNCMENQLTSLDLSHN 278
Cdd:COG4886   234 DLSNNQLTDLpELGNLTNLEELDLSNNQLTDLPPLANlTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLEL 313

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 279 IAGSRLKCNAQKYDVEIRTTDMKIPYADFPGTFDITKAGYIVGADSNFKVDLTKPSTVTYNYYTGSDTIL 348
Cdd:COG4886   314 LILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLA 383
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 440-505 3.19e-22

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 90.38  E-value: 3.19e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1957293378 440 YTVTFNTNGGSaiNPQTITAGGLVTKPAAPTKDGYTFAGWYKDAEFTKAFDF-ANETINADTTIYAK 505
Cdd:pfam09479   1 YTVTFDANGGT--VSQTVTYGTTITLPADPTKEGYTFAGWYTDSDGTTKYTFgTDVTPTGDITLYAK 65
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
69-332 8.55e-18

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 86.14  E-value: 8.55e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378  69 HITSISVTSENIADL-KGIEYFTALQTLNCAYNQLRSL--DISKNTALKVLNCHDNKLTNL--DLSKNTALETLKCSVNQ 143
Cdd:COG4886   160 NLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLpePLGNLTNLEELDLSGNQLTDLpePLANLTNLETLDLSNNQ 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 144 LTNLdvsknPALisltcfsSQLTNldvskntaLKELLCDGNQLRKLDVSKN-TALQRLECWENQLTSLDVSKNTALKKLW 222
Cdd:COG4886   240 LTDL-----PEL-------GNLTN--------LEELDLSNNQLTDLPPLANlTNLKTLDLSNNQLTDLKLKELELLLGLN 299

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 223 CKSNQLTKLDVSKNTKLQGLNCNSNQLTSLDVSKNRELVHLNCMENQLTSLDLSHNIAGSRLKCNAQKYDVEIRTTDMKI 302
Cdd:COG4886   300 SLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATL 379

                         250       260       270
                  ....*....|....*....|....*....|
gi 1957293378 303 PYADFPGTFDITKAGYIVGADSNFKVDLTK 332
Cdd:COG4886   380 LTLALLLLTLLLLLLTTTAGVLLLTLALLD 409
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 366-431 7.11e-17

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 75.36  E-value: 7.11e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1957293378 366 YIVRFDTNGGTevSVQIIKQGDHVTIPTAPTKDGFTFAGWYKDAGLTTPFDVETE-TINADITLYAK 431
Cdd:pfam09479   1 YTVTFDANGGT--VSQTVTYGTTITLPADPTKEGYTFAGWYTDSDGTTKYTFGTDvTPTGDITLYAK 65
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
92-273 9.61e-11

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 65.10  E-value: 9.61e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378  92 LQTLNCAYNQLRSLDISKNTALKVLNCHDNKLTNLDLSKNTALETLKCSVNQLTNLDVSKNPALISLTCFSSQLTNLDVS 171
Cdd:PRK15370  222 IKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAH 301

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 172 KNTALKELLCDGNQLRKLDVSKNTALQRLECWENQLTSLDVSKNTALKKLWCKSNQLTKLDVSKNTKLQGLNCNSNQLTS 251
Cdd:PRK15370  302 LPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN 381

                         170       180
                  ....*....|....*....|..
gi 1957293378 252 LDVSKNRELVHLNCMENQLTSL 273
Cdd:PRK15370  382 LPENLPAALQIMQASRNNLVRL 403
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
39-290 1.32e-10

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 64.72  E-value: 1.32e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378  39 TNFPDATFRDYVSTKFDKDNNGKLSDTEIAHITSISVTSENIADLKGIEYFTaLQTLNCAYNQLRSLDISKNTALKVLNC 118
Cdd:PRK15370  191 TTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDT-IQEMELSINRITELPERLPSALQSLDL 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 119 HDNKLTNLDLSKNTALETLKCSVNQLTNLDVSKNPALISLTCFSSQLTNLDVSKNTALKELLCDGNQLRKLDVSKNTALQ 198
Cdd:PRK15370  270 FHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQ 349

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 199 RLECWENQLTSLDVSKNTALKKLWCKSNQLTKLDVSKNTKLQGLNCNSNQLTSLDVSknreLVHLNCMENQLTSLDLSHN 278
Cdd:PRK15370  350 VLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPES----LPHFRGEGPQPTRIIVEYN 425

                         250
                  ....*....|..
gi 1957293378 279 IAGSRLKCNAQK 290
Cdd:PRK15370  426 PFSERTIQNMQR 437
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 105-291 7.24e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 56.72  E-value: 7.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 105 LDISKNtaLKVLNCHDNKLTNLD-LSKNTALETLKCSVNQLT---NLDvsknpaliSLTCfssqLTNLDVSKN--TALKE 178
Cdd:cd21340    20 LSLCKN--LKVLYLYDNKITKIEnLEFLTNLTHLYLQNNQIEkieNLE--------NLVN----LKKLYLGGNriSVVEG 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 179 L-LCDgnQLRKLDVSKntalQRLECwENQLTsLDVSKNTALkklwckSNQLTKLDVSKN--TKLQGLNCNSNqLTSLDVS 255
Cdd:cd21340    86 LeNLT--NLEELHIEN----QRLPP-GEKLT-FDPRSLAAL------SNSLRVLNISGNniDSLEPLAPLRN-LEQLDAS 150

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1957293378 256 KNR-----ELVH-LNCMeNQLTSLDLSHNIAgsrlkCNAQKY 291
Cdd:cd21340   151 NNQisdleELLDlLSSW-PSLRELDLTGNPV-----CKKPKY 186
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 395-434 4.11e-08

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 49.54  E-value: 4.11e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1957293378 395 PTKDGFTFAGWYKDAGLTTPFDVE-TETINADITLYAKWTP 434
Cdd:TIGR02543   1 PTKTGYTFVGWTGDSTGTPVKNFTiPSGSTGDLTLYAKWTP 41
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 469-510 1.16e-07

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 48.39  E-value: 1.16e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1957293378 469 PTKDGYTFAGWYKDAEFTKAFDFaneTI----NADTTIYAKWTQNA 510
Cdd:TIGR02543   1 PTKTGYTFVGWTGDSTGTPVKNF---TIpsgsTGDLTLYAKWTPNT 43
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 79-173 1.79e-07

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 52.48  E-value: 1.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378  79 NIADLKGIEYFTALQTLNCAYNQL----------RSLD-ISKNtaLKVLNCHDNKLTNL-DLSKNTALETLKCSVNQLTN 146
Cdd:cd21340    79 RISVVEGLENLTNLEELHIENQRLppgekltfdpRSLAaLSNS--LRVLNISGNNIDSLePLAPLRNLEQLDASNNQISD 156

                          90       100
                  ....*....|....*....|....*..
gi 1957293378 147 LDVSKNPalisLTCFsSQLTNLDVSKN 173
Cdd:cd21340   157 LEELLDL----LSSW-PSLRELDLTGN 178
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
110-273 9.87e-06

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 49.01  E-value: 9.87e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 110 NTALKVLNCHDNKLTNLDLSKNTALETLKCSVNQLTNLdvsknPALisltcfSSQLTNLDVSkntalkellcdGNQLRKL 189
Cdd:PRK15387  200 NNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSL-----PAL------PPELRTLEVS-----------GNQLTSL 257

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 190 DVSKnTALQRLECWENQLTSLDvSKNTALKKLWCKSNQLTKLDVSKnTKLQGLNCNSNQLTSLDVSKNrELVHLNCMENQ 269
Cdd:PRK15387  258 PVLP-PGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPVLP-PGLQELSVSDNQLASLPALPS-ELCKLWAYNNQ 333


                  ....
gi 1957293378 270 LTSL 273
Cdd:PRK15387  334 LTSL 337
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 518-583 1.11e-05

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 43.39  E-value: 1.11e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1957293378 518 FTITFDKNGGTgimADVTVNKGETYTLPdckfAAP--EGKTFKAW---EVDGTEKAVGDSIKVNANTTVKA 583
Cdd:pfam09479   1 YTVTFDANGGT---VSQTVTYGTTITLP----ADPtkEGYTFAGWytdSDGTTKYTFGTDVTPTGDITLYA 64
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
91-231 2.28e-05

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 47.85  E-value: 2.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378  91 ALQTLNCAYNQLRSLDISKNTALKvLNCHDNKLTNLDlSKNTALETLKCSVNQLTNLDVSKNpALISLTCFSSQLTNLDv 170
Cdd:PRK15387  303 GLQELSVSDNQLASLPALPSELCK-LWAYNNQLTSLP-TLPSGLQELSVSDNQLASLPTLPS-ELYKLWAYNNRLTSLP- 378

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1957293378 171 SKNTALKELLCDGNQLRKLDVSKnTALQRLECWENQLTSLDVSKnTALKKLWCKSNQLTKL 231
Cdd:PRK15387  379 ALPSGLKELIVSGNRLTSLPVLP-SELKELMVSGNRLTSLPMLP-SGLLSLSVYRNQLTRL 437
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 61-278 3.77e-05

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 47.15  E-value: 3.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378  61 KLSDTEIAHITSISVTSEnIAdlKGIEYFTALQTLNCAYNQLrSLDISKNtalkvLNCHDNkLTNLDLSKNTAL----ET 136
Cdd:PLN00113  306 QLQNLEILHLFSNNFTGK-IP--VALTSLPRLQVLQLWSNKF-SGEIPKN-----LGKHNN-LTVLDLSTNNLTgeipEG 375

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 137 LkCSVNQLTNLDVSKN------PALISlTCFSsqLTNLDVSKNTALKELLCDGNQLRK---LDVSKNTALQRLEC--WE- 204
Cdd:PLN00113  376 L-CSSGNLFKLILFSNslegeiPKSLG-ACRS--LRRVRLQDNSFSGELPSEFTKLPLvyfLDISNNNLQGRINSrkWDm 451

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 205 NQLTSLDVSKNTALKKL--WCKSNQLTKLDVSKNtKLQGLNCNS----NQLTSLDVSKN-------RELVhlNCmeNQLT 271
Cdd:PLN00113  452 PSLQMLSLARNKFFGGLpdSFGSKRLENLDLSRN-QFSGAVPRKlgslSELMQLKLSENklsgeipDELS--SC--KKLV 526


                  ....*..
gi 1957293378 272 SLDLSHN 278
Cdd:PLN00113  527 SLDLSHN 533
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
122-276 3.78e-05

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 47.00  E-value: 3.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 122 KLTNLDLSKNTALETLKCSVNQLTNLDVSKNPALISLTCFSSQLTNLDVSKNTALKELLCDGNQLRKLDVSKNTALQRLE 201
Cdd:PRK15370  189 GLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLD 268

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1957293378 202 CWENQLTSLDVSKNTALKKLWCKSNQLTKLDVSKNTKLQGLNCNSNQLTSLDVSKNRELVHLNCMENQLTSLDLS 276
Cdd:PRK15370  269 LFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPAS 343
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 83-278 3.14e-04

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 43.50  E-value: 3.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378  83 LKGIEYFTALQTLNCAYNQLRSLDISK----NTALKVLNCHDNKLTNLDLSKNTALETLKcSVNQLTNLDVSKN------ 152
Cdd:cd00116    19 LPKLLCLQVLRLEGNTLGEEAAKALASalrpQPSLKELCLSLNETGRIPRGLQSLLQGLT-KGCGLQELDLSDNalgpdg 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 153 PALISLTCFSSQLTNLDVSKN-----------TALKELLCDgnqLRKLDVSKN-----------------TALQRLECWE 204
Cdd:cd00116    98 CGVLESLLRSSSLQELKLNNNglgdrglrllaKGLKDLPPA---LEKLVLGRNrlegascealakalranRDLKELNLAN 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 205 NQLTS-------LDVSKNTALKKLWCKSNQLTKLDVSK-------NTKLQGLNCNSNQLTSLDVSknrELVHLNCMENQ- 269
Cdd:cd00116   175 NGIGDagiralaEGLKANCNLEVLDLNNNGLTDEGASAlaetlasLKSLEVLNLGDNNLTDAGAA---ALASALLSPNIs 251


                  ....*....
gi 1957293378 270 LTSLDLSHN 278
Cdd:cd00116   252 LLTLSLSCN 260
LRR_8 pfam13855
Leucine rich repeat;
206-278 3.43e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.04  E-value: 3.43e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1957293378 206 QLTSLDVSkntalkklwckSNQLTKLDVS---KNTKLQGLNCNSNQLTSLDvskNRELVHLNcmenQLTSLDLSHN 278
Cdd:pfam13855   2 NLRSLDLS-----------NNRLTSLDDGafkGLSNLKVLDLSNNLLTTLS---PGAFSGLP----SLRYLDLSGN 59
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 90-127 5.90e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 38.00  E-value: 5.90e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1957293378  90 TALQTLNCAYNQLRSLD-ISKNTALKVLNCHDN-KLTNLD 127
Cdd:pfam12799   1 PNLEVLDLSNNQITDIPpLAKLPNLETLDLSGNnKITDLS 40
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 79-125 5.94e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 41.70  E-value: 5.94e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1957293378  79 NIADLKGIEYFTALQTLNCAYNQLRSLD-----ISKNTALKVLNCHDNKLTN 125
Cdd:cd21340   131 NIDSLEPLAPLRNLEQLDASNNQISDLEelldlLSSWPSLRELDLTGNPVCK 182
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 111-152 1.09e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 37.22  E-value: 1.09e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1957293378 111 TALKVLNCHDNKLTNLD-LSKNTALETLKCS-VNQLTNLDVSKN 152
Cdd:pfam12799   1 PNLEVLDLSNNQITDIPpLAKLPNLETLDLSgNNKITDLSDLAN 44
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 89-213 1.84e-03

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 40.80  E-value: 1.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378  89 FTALQTLNCAYNQLRSLDISK-------NTALKVLNCHDNKLTNLDLSknTALETLKCSVNQLTNLDVSKNpaliSLTCF 161
Cdd:cd00116   192 NCNLEVLDLNNNGLTDEGASAlaetlasLKSLEVLNLGDNNLTDAGAA--ALASALLSPNISLLTLSLSCN----DITDD 265

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1957293378 162 SSQltnldvskntALKELLCDGNQLRKLDVSKNTALQR--------LECWENQLTSLDVS 213
Cdd:cd00116   266 GAK----------DLAEVLAEKESLLELDLRGNKFGEEgaqllaesLLEPGNELESLWVK 315
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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