MULTISPECIES: ABC transporter substrate-binding protein [Herbaspirillum]
Protein Classification
ABC transporter substrate-binding protein( domain architecture ID 10156919)
ABC transporter substrate-binding protein is the type I periplasmic binding protein that functions as the primary receptor of an uncharacterized ABC-type transport system, which is predicted to be involved in uptake of amino acids, peptides, or inorganic ions
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||||
| PBP1_ABC_ligand_binding-like | cd06334 | type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
35-409 | 2.01e-131 | ||||||
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally. : Pssm-ID: 380557 [Multi-domain] Cd Length: 360 Bit Score: 383.13 E-value: 2.01e-131
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| Name | Accession | Description | Interval | E-value | ||||||
| PBP1_ABC_ligand_binding-like | cd06334 | type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
35-409 | 2.01e-131 | ||||||
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally. Pssm-ID: 380557 [Multi-domain] Cd Length: 360 Bit Score: 383.13 E-value: 2.01e-131
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| Peripla_BP_6 | pfam13458 | Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
36-402 | 1.41e-47 | ||||||
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins. Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 166.68 E-value: 1.41e-47
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| LivK | COG0683 | ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid ... |
44-411 | 5.21e-34 | ||||||
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism]; Pssm-ID: 440447 [Multi-domain] Cd Length: 314 Bit Score: 129.28 E-value: 5.21e-34
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| Name | Accession | Description | Interval | E-value | ||||||
| PBP1_ABC_ligand_binding-like | cd06334 | type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
35-409 | 2.01e-131 | ||||||
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally. Pssm-ID: 380557 [Multi-domain] Cd Length: 360 Bit Score: 383.13 E-value: 2.01e-131
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| Peripla_BP_6 | pfam13458 | Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
36-402 | 1.41e-47 | ||||||
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins. Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 166.68 E-value: 1.41e-47
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| PBP1_ABC_ligand_binding-like | cd06343 | type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
44-406 | 1.11e-34 | ||||||
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. Pssm-ID: 380566 [Multi-domain] Cd Length: 355 Bit Score: 132.31 E-value: 1.11e-34
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| LivK | COG0683 | ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid ... |
44-411 | 5.21e-34 | ||||||
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism]; Pssm-ID: 440447 [Multi-domain] Cd Length: 314 Bit Score: 129.28 E-value: 5.21e-34
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| PBP1_ABC_transporter_LIVBP-like | cd06268 | periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the ... |
44-289 | 1.33e-21 | ||||||
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily; Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group. Pssm-ID: 380492 [Multi-domain] Cd Length: 298 Bit Score: 94.32 E-value: 1.33e-21
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| PBP1_ABC_RPA1789-like | cd06333 | type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, ... |
57-297 | 1.36e-17 | ||||||
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, RPA1791-1793), involved in active transport of lignin-derived aromatic substrates, and its close homologs; This group includes RPA1789 (CouP) from Rhodopseudomonas palustris and its close homologs in other bacteria. RPA1789 (CouP) is the periplasmic binding-protein component of an ABC system (CouPSTU; RPA1789, RPA1791-1793) that is involved in the active transport of lignin-derived aromatic substrates. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP). Pssm-ID: 380556 [Multi-domain] Cd Length: 342 Bit Score: 83.37 E-value: 1.36e-17
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| PBP1_ABC_ligand_binding-like | cd06335 | type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
44-283 | 2.23e-17 | ||||||
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally. Pssm-ID: 380558 [Multi-domain] Cd Length: 348 Bit Score: 83.04 E-value: 2.23e-17
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| PBP1_ABC_ligand_binding-like | cd06326 | periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
44-258 | 2.45e-11 | ||||||
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however. Pssm-ID: 380549 [Multi-domain] Cd Length: 339 Bit Score: 64.49 E-value: 2.45e-11
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| PBP1_ABC_ligand_binding-like | cd19978 | periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
44-257 | 6.05e-09 | ||||||
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in the uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however. Pssm-ID: 380633 [Multi-domain] Cd Length: 341 Bit Score: 57.20 E-value: 6.05e-09
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| PBP1_SBP-like | cd19989 | periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
36-288 | 1.75e-08 | ||||||
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids. Pssm-ID: 380644 [Multi-domain] Cd Length: 299 Bit Score: 55.75 E-value: 1.75e-08
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| PBP1_ABC_ligand_binding-like | cd06338 | type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
44-289 | 9.73e-08 | ||||||
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally. Pssm-ID: 380561 [Multi-domain] Cd Length: 347 Bit Score: 53.74 E-value: 9.73e-08
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| PBP1_ABC_ligand_binding-like | cd19980 | type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
44-287 | 8.48e-07 | ||||||
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally. Pssm-ID: 380635 [Multi-domain] Cd Length: 334 Bit Score: 50.68 E-value: 8.48e-07
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| PBP1_ABC_HAAT-like | cd19988 | type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
64-304 | 1.07e-05 | ||||||
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally. Pssm-ID: 380643 [Multi-domain] Cd Length: 302 Bit Score: 46.89 E-value: 1.07e-05
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| PBP1_ABC_ligand_binding-like | cd06336 | type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
84-286 | 1.76e-05 | ||||||
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally. Pssm-ID: 380559 [Multi-domain] Cd Length: 345 Bit Score: 46.46 E-value: 1.76e-05
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| PBP1_ABC_ligand_binding-like | cd19982 | type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
36-290 | 3.94e-05 | ||||||
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally. Pssm-ID: 380637 [Multi-domain] Cd Length: 302 Bit Score: 45.35 E-value: 3.94e-05
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| PBP1_ABC_ligand_binding-like | cd06340 | type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
128-304 | 4.82e-05 | ||||||
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally. Pssm-ID: 380563 [Multi-domain] Cd Length: 352 Bit Score: 45.24 E-value: 4.82e-05
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| PBP1_ABC_LivK_ligand_binding-like | cd06347 | type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
44-289 | 9.78e-05 | ||||||
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally. Pssm-ID: 380570 [Multi-domain] Cd Length: 334 Bit Score: 44.07 E-value: 9.78e-05
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| PBP1_ABC_ligand_binding-like | cd06345 | type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
64-258 | 5.45e-04 | ||||||
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally. Pssm-ID: 380568 [Multi-domain] Cd Length: 356 Bit Score: 41.87 E-value: 5.45e-04
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| PBP1_SBP-like | cd06328 | periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
119-342 | 6.93e-04 | ||||||
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids. Pssm-ID: 380551 [Multi-domain] Cd Length: 336 Bit Score: 41.52 E-value: 6.93e-04
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| PBP1_ABC_ligand_binding-like | cd06346 | type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
44-265 | 3.18e-03 | ||||||
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally. Pssm-ID: 380569 [Multi-domain] Cd Length: 314 Bit Score: 39.47 E-value: 3.18e-03
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| PBP1_Nba-like | cd06359 | type 1 periplasmic binding component of active transport systems predicted to be involved in ... |
44-291 | 4.91e-03 | ||||||
type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway; This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized. Pssm-ID: 380582 [Multi-domain] Cd Length: 333 Bit Score: 38.77 E-value: 4.91e-03
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| PBP1_As_SBP-like | cd06330 | periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
64-191 | 9.85e-03 | ||||||
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic (As) and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Pssm-ID: 380553 [Multi-domain] Cd Length: 342 Bit Score: 37.93 E-value: 9.85e-03
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| Blast search parameters | ||||
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