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Conserved domains on  [gi|1993222155|ref|WP_204873760|]
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energy-coupling factor ABC transporter substrate-binding protein [Pseudoflavonifractor phocaeensis]

Protein Classification

energy-coupling factor ABC transporter substrate-binding protein( domain architecture ID 10004953)

energy-coupling factor ABC transporter substrate-binding protein similar to the cobalt transport protein CbiN, which is part of the energy-coupling factor (ECF) transporter complex CbiMNOQ that is involved in cobalt import

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CbiN COG1930
ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and ...
 1-96 1.10e-35

ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism];


:

Pssm-ID: 441533  Cd Length: 99  Bit Score: 117.27  E-value: 1.10e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1993222155   1 MKLWQKNALLLLLVVILAAVPLWLRQDAEFGGADGQAEELVGELNPTYETWFEPVLEPASGEVESMLFAVQAAIGSGVVC 80
Cdd:COG1930     1 MKKKKKNLLLLLLVVALAVLPLFLGGGAEFGGADDQAEEAIEEIAPDYEPWFEPLWEPPSGEIESLLFALQAAIGAGVIG 80

                          90
                  ....*....|....*.
gi 1993222155  81 FIIGRLTAKGSKTKEE 96
Cdd:COG1930    81 YYLGYYRGRRKARKEA 96
 
Name Accession Description Interval E-value
CbiN COG1930
ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and ...
 1-96 1.10e-35

ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism];


Pssm-ID: 441533  Cd Length: 99  Bit Score: 117.27  E-value: 1.10e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1993222155   1 MKLWQKNALLLLLVVILAAVPLWLRQDAEFGGADGQAEELVGELNPTYETWFEPVLEPASGEVESMLFAVQAAIGSGVVC 80
Cdd:COG1930     1 MKKKKKNLLLLLLVVALAVLPLFLGGGAEFGGADDQAEEAIEEIAPDYEPWFEPLWEPPSGEIESLLFALQAAIGAGVIG 80

                          90
                  ....*....|....*.
gi 1993222155  81 FIIGRLTAKGSKTKEE 96
Cdd:COG1930    81 YYLGYYRGRRKARKEA 96
PRK02898 PRK02898
energy-coupling factor ABC transporter substrate-binding protein;
21-90 1.20e-30

energy-coupling factor ABC transporter substrate-binding protein;


Pssm-ID: 179494  Cd Length: 100  Bit Score: 104.24  E-value: 1.20e-30
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1993222155  21 PLWLRQ-----DAEFGGADGQAEELVGELNPTYETWFEPVLEPASGEVESMLFAVQAAIGSGVVCFIIGRLTAKG 90
Cdd:PRK02898   19 PLFIYSgsgedGGEFGGADGQAEEAITEIAPDYEPWFEPLWEPPSGEIESLLFALQAALGAGIIGYILGYYKGRS 93
CbiN pfam02553
Cobalt transport protein component CbiN; CbiN is part of the active cobalt transport system ...
 21-73 1.14e-25

Cobalt transport protein component CbiN; CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system.


Pssm-ID: 426827  Cd Length: 67  Bit Score: 90.66  E-value: 1.14e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1993222155  21 PLWLRQDAEFGGADGQAEELVGELNPTYETWFEPVLEPASGEVESMLFAVQAA 73
Cdd:pfam02553  15 PLFLVKGAEFGGADDQAEEAITEIAPDYEPWFEPLWEPPSGEIESLLFALQAA 67
cbiN TIGR01165
cobalt transport protein; This model describes the cobalt transporter in bacteria and its ...
 26-85 5.53e-24

cobalt transport protein; This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273477  Cd Length: 91  Bit Score: 87.18  E-value: 5.53e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1993222155  26 QDAEFGGADGQAEELVGELNPTYETWFEPVLEPASGEVESMLFAVQAAIGSGVVCFIIGR 85
Cdd:TIGR01165  29 EEEEYGGADGQAEEVIEEIGPDYKPWFSPLWEPPSGEIESLLFALQAALGALVIGYVIGY 88
 
Name Accession Description Interval E-value
CbiN COG1930
ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and ...
 1-96 1.10e-35

ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism];


Pssm-ID: 441533  Cd Length: 99  Bit Score: 117.27  E-value: 1.10e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1993222155   1 MKLWQKNALLLLLVVILAAVPLWLRQDAEFGGADGQAEELVGELNPTYETWFEPVLEPASGEVESMLFAVQAAIGSGVVC 80
Cdd:COG1930     1 MKKKKKNLLLLLLVVALAVLPLFLGGGAEFGGADDQAEEAIEEIAPDYEPWFEPLWEPPSGEIESLLFALQAAIGAGVIG 80

                          90
                  ....*....|....*.
gi 1993222155  81 FIIGRLTAKGSKTKEE 96
Cdd:COG1930    81 YYLGYYRGRRKARKEA 96
PRK02898 PRK02898
energy-coupling factor ABC transporter substrate-binding protein;
21-90 1.20e-30

energy-coupling factor ABC transporter substrate-binding protein;


Pssm-ID: 179494  Cd Length: 100  Bit Score: 104.24  E-value: 1.20e-30
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1993222155  21 PLWLRQ-----DAEFGGADGQAEELVGELNPTYETWFEPVLEPASGEVESMLFAVQAAIGSGVVCFIIGRLTAKG 90
Cdd:PRK02898   19 PLFIYSgsgedGGEFGGADGQAEEAITEIAPDYEPWFEPLWEPPSGEIESLLFALQAALGAGIIGYILGYYKGRS 93
CbiN pfam02553
Cobalt transport protein component CbiN; CbiN is part of the active cobalt transport system ...
 21-73 1.14e-25

Cobalt transport protein component CbiN; CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system.


Pssm-ID: 426827  Cd Length: 67  Bit Score: 90.66  E-value: 1.14e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1993222155  21 PLWLRQDAEFGGADGQAEELVGELNPTYETWFEPVLEPASGEVESMLFAVQAA 73
Cdd:pfam02553  15 PLFLVKGAEFGGADDQAEEAITEIAPDYEPWFEPLWEPPSGEIESLLFALQAA 67
cbiN TIGR01165
cobalt transport protein; This model describes the cobalt transporter in bacteria and its ...
 26-85 5.53e-24

cobalt transport protein; This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273477  Cd Length: 91  Bit Score: 87.18  E-value: 5.53e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1993222155  26 QDAEFGGADGQAEELVGELNPTYETWFEPVLEPASGEVESMLFAVQAAIGSGVVCFIIGR 85
Cdd:TIGR01165  29 EEEEYGGADGQAEEVIEEIGPDYKPWFSPLWEPPSGEIESLLFALQAALGALVIGYVIGY 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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