AmiS/UreI family transporter [Exiguobacterium sp. s50]
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
UreI_AmiS_like super family | cl03519 | UreI/AmiS family, proton-gated urea channel and putative amide transporters; This family ... |
3-161 | 9.12e-46 | ||||
UreI/AmiS family, proton-gated urea channel and putative amide transporters; This family includes UreI proton-gated urea channels as well as putative amide transporters (AmiS of the amidase gene cluster). Helicobacter pylori UreI (HpUreI), a proton-gated inner membrane urea channel opens in acidic pH to allow urea influx to the cytoplasm. There urea is metabolized, producing NH3 and CO2, leading to buffering of the periplasm. This action is essential for the survival of H. pylori in the stomach, and has been identified as a mechanism that could be clinically targeted to prevent various illnesses associated with infection by H. pylori. UreI and the related amide channels (AmiS) appear to function as hexamers, and have 6 predicted transmembrane segments. UreI has also been shown have a lipid "plug" in the center of the hexamer. Urea enters at the periplasmic opening of UreI and must pass 2 constriction sites, one on each side of a conserved Glu (Glu 177, H. pylori numbering), to reach the cytoplasm. Urea/thiourea selectivity is diminished by mutation of a conserved Trp to Ala or Phe in constriction site 2 (cytoplasmic). Channel functionality is greatly diminished by mutation of a conserved Trp in constriction site 1 (periplasmic) and a conserved Tyr in constriction site 2, and to a lesser extent a conserved Phe in site 1. In the cytoplasm, urease hydrolyzes urea to form ammonia and carbamate, which decomposes to carbonic acid. UreI is fully open at pH 5.0 to facilitate urea influx, but closes at neutral pH, preventing over-alkalization. Glu 177 (H. pylori numbering) is present in urea channel proteins, but absent in the related amide channels, suggesting that it plays a role in urea specificity. The actual alignment was detected with superfamily member cd13429: Pssm-ID: 446120 Cd Length: 165 Bit Score: 148.62 E-value: 9.12e-46
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Name | Accession | Description | Interval | E-value | ||||
UreI_AmiS_like_2 | cd13429 | UreI/AmiS family, subgroup 2. Putative transporters related to proton-gated urea channel and ... |
3-161 | 9.12e-46 | ||||
UreI/AmiS family, subgroup 2. Putative transporters related to proton-gated urea channel and putative amide transporters; This subfamily includes putative UreI proton-gated urea channels and putative amide transporters (AmiS of the amidase gene cluster). Helicobacter pylori UreI (HpUreI), a proton-gated inner membrane urea channel opens in acidic pH to allow urea influx to the cytoplasm. There urea is metabolized, producing NH3 and Co2, leading to buffering of the periplasm. This action is essential for the survival of H. pylori in the stomach, and has been identified as a mechanism that could be clinically targeted to prevent various illnesses associated with infection by H. pylori. UreI and the related amide channels (AmiS) appear to function as hexamers, and have 6 predicted transmembrane segments. UreI has also been shown have a lipid "plug" in the center of the hexamer. Urea enters at the periplasmic opening of UreI and must pass 2 constriction sites, one on each side of a conserved Glu (Glu 177, H. pylori numbering), to reach the cytoplasm. Urea/thiourea selectivity is diminished by mutation of a conserved Trp to Ala or Phe in constriction site 2 (cytoplasmic). Channel functionality is greatly diminished by mutation of a conserved Trp in constriction site 1 (periplasmic) and a conserved Tyr in constriction site 2, and to a lesser extent a conserved Phe in site 1. In the cytoplasm, urease hydrolyzes urea to form ammonia and carbamate, which decomposes to carbonic acid. UreI is fully open at pH 5.0 to facilitate urea influx, but closes at neutral pH, preventing over-alkalization. Glu 177 (H. pylori numbering) is present in urea channel proteins, but absent in the related amide channels, suggesting that it plays a role in urea specificity. Pssm-ID: 259833 Cd Length: 165 Bit Score: 148.62 E-value: 9.12e-46
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AmiS_UreI | pfam02293 | AmiS/UreI family transporter; This family includes UreI and proton gated urea channel as well ... |
1-160 | 1.16e-41 | ||||
AmiS/UreI family transporter; This family includes UreI and proton gated urea channel as well as putative amide transporters. Pssm-ID: 426706 Cd Length: 165 Bit Score: 138.09 E-value: 1.16e-41
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PLN02638 | PLN02638 | cellulose synthase A (UDP-forming), catalytic subunit |
28-159 | 3.58e-03 | ||||
cellulose synthase A (UDP-forming), catalytic subunit Pssm-ID: 215343 [Multi-domain] Cd Length: 1079 Bit Score: 37.60 E-value: 3.58e-03
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Name | Accession | Description | Interval | E-value | ||||
UreI_AmiS_like_2 | cd13429 | UreI/AmiS family, subgroup 2. Putative transporters related to proton-gated urea channel and ... |
3-161 | 9.12e-46 | ||||
UreI/AmiS family, subgroup 2. Putative transporters related to proton-gated urea channel and putative amide transporters; This subfamily includes putative UreI proton-gated urea channels and putative amide transporters (AmiS of the amidase gene cluster). Helicobacter pylori UreI (HpUreI), a proton-gated inner membrane urea channel opens in acidic pH to allow urea influx to the cytoplasm. There urea is metabolized, producing NH3 and Co2, leading to buffering of the periplasm. This action is essential for the survival of H. pylori in the stomach, and has been identified as a mechanism that could be clinically targeted to prevent various illnesses associated with infection by H. pylori. UreI and the related amide channels (AmiS) appear to function as hexamers, and have 6 predicted transmembrane segments. UreI has also been shown have a lipid "plug" in the center of the hexamer. Urea enters at the periplasmic opening of UreI and must pass 2 constriction sites, one on each side of a conserved Glu (Glu 177, H. pylori numbering), to reach the cytoplasm. Urea/thiourea selectivity is diminished by mutation of a conserved Trp to Ala or Phe in constriction site 2 (cytoplasmic). Channel functionality is greatly diminished by mutation of a conserved Trp in constriction site 1 (periplasmic) and a conserved Tyr in constriction site 2, and to a lesser extent a conserved Phe in site 1. In the cytoplasm, urease hydrolyzes urea to form ammonia and carbamate, which decomposes to carbonic acid. UreI is fully open at pH 5.0 to facilitate urea influx, but closes at neutral pH, preventing over-alkalization. Glu 177 (H. pylori numbering) is present in urea channel proteins, but absent in the related amide channels, suggesting that it plays a role in urea specificity. Pssm-ID: 259833 Cd Length: 165 Bit Score: 148.62 E-value: 9.12e-46
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AmiS_UreI | pfam02293 | AmiS/UreI family transporter; This family includes UreI and proton gated urea channel as well ... |
1-160 | 1.16e-41 | ||||
AmiS/UreI family transporter; This family includes UreI and proton gated urea channel as well as putative amide transporters. Pssm-ID: 426706 Cd Length: 165 Bit Score: 138.09 E-value: 1.16e-41
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UreI_AmiS | cd13428 | UreI/Amis family, proton-gated urea channel and putative amide transporters; This subfamily ... |
4-162 | 1.01e-30 | ||||
UreI/Amis family, proton-gated urea channel and putative amide transporters; This subfamily includes UreI proton-gated urea channels as well as putative amide transporters (AmiS of the amidase gene cluster). Helicobacter pylori UreI (HpUreI), a proton-gated inner membrane urea channel opens in acidic pH to allow urea influx to the cytoplasm. There urea is metabolized, producing NH3 and Co2, leading to buffering of the periplasm. This action is essential for the survival of H. pylori in the stomach, and has been identified as a mechanism that could be clinically targeted to prevent various illnesses associated with infection by H. pylori. UreI and the related amide channels (AmiS) appear to function as hexamers, and have 6 predicted transmembrane segments. UreI has also been shown have a lipid "plug" in the center of the hexamer. Urea enters at the periplasmic opening of UreI and must pass 2 constriction sites, one on each side of a conserved Glu (Glu 177, H. pylori numbering), to reach the cytoplasm. Urea/thiourea selectivity is diminished by mutation of a conserved Trp to Ala or Phe in constriction site 2 (cytoplasmic). Channel functionality is greatly diminished by mutation of a conserved Trp in constriction site 1 (periplasmic) and a conserved Tyr in constriction site 2, and to a lesser extent a conserved Phe in site 1. In the cytoplasm, urease hydrolyzes urea to form ammonia and carbamate, which decomposes to carbonic acid. UreI is fully open at pH 5.0 to facilitate urea influx, but closes at neutral pH, preventing over-alkalization. Glu 177 (H. pylori numbering) is present in urea channel proteins, but absent in the related amide channels, suggesting that it plays a role in urea specificity. Pssm-ID: 259832 Cd Length: 162 Bit Score: 110.07 E-value: 1.01e-30
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UreI_AmiS_like | cd13404 | UreI/AmiS family, proton-gated urea channel and putative amide transporters; This family ... |
4-155 | 7.21e-22 | ||||
UreI/AmiS family, proton-gated urea channel and putative amide transporters; This family includes UreI proton-gated urea channels as well as putative amide transporters (AmiS of the amidase gene cluster). Helicobacter pylori UreI (HpUreI), a proton-gated inner membrane urea channel opens in acidic pH to allow urea influx to the cytoplasm. There urea is metabolized, producing NH3 and CO2, leading to buffering of the periplasm. This action is essential for the survival of H. pylori in the stomach, and has been identified as a mechanism that could be clinically targeted to prevent various illnesses associated with infection by H. pylori. UreI and the related amide channels (AmiS) appear to function as hexamers, and have 6 predicted transmembrane segments. UreI has also been shown have a lipid "plug" in the center of the hexamer. Urea enters at the periplasmic opening of UreI and must pass 2 constriction sites, one on each side of a conserved Glu (Glu 177, H. pylori numbering), to reach the cytoplasm. Urea/thiourea selectivity is diminished by mutation of a conserved Trp to Ala or Phe in constriction site 2 (cytoplasmic). Channel functionality is greatly diminished by mutation of a conserved Trp in constriction site 1 (periplasmic) and a conserved Tyr in constriction site 2, and to a lesser extent a conserved Phe in site 1. In the cytoplasm, urease hydrolyzes urea to form ammonia and carbamate, which decomposes to carbonic acid. UreI is fully open at pH 5.0 to facilitate urea influx, but closes at neutral pH, preventing over-alkalization. Glu 177 (H. pylori numbering) is present in urea channel proteins, but absent in the related amide channels, suggesting that it plays a role in urea specificity. Pssm-ID: 259831 Cd Length: 167 Bit Score: 87.19 E-value: 7.21e-22
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UreI_AmiS_like_1 | cd13747 | UreI/Amis family, subgroup 1. Putative proton-gated urea channel and putative amide ... |
4-163 | 7.48e-22 | ||||
UreI/Amis family, subgroup 1. Putative proton-gated urea channel and putative amide transporters; This subfamily includes putative UreI proton-gated urea channels and putative amide transporters (AmiS of the amidase gene cluster). Helicobacter pylori UreI (HpUreI), a proton-gated inner membrane urea channel opens in acidic pH to allow urea influx to the cytoplasm. There urea is metabolized, producing NH3 and Co2, leading to buffering of the periplasm. This action is essential for the survival of H. pylori in the stomach, and has been identified as a mechanism that could be clinically targeted to prevent various illnesses associated with infection by H. pylori. UreI and the related amide channels (AmiS) appear to function as hexamers, and have 6 predicted transmembrane segments. UreI has also been shown have a lipid "plug" in the center of the hexamer. Urea enters at the periplasmic opening of UreI and must pass 2 constriction sites, one on each side of a conserved Glu (Glu 177, H. pylori numbering), to reach the cytoplasm. Urea/thiourea selectivity is diminished by mutation of a conserved Trp to Ala or Phe in constriction site 2 (cytoplasmic). Channel functionality is greatly diminished by mutation of a conserved Trp in constriction site 1 (periplasmic) and a conserved Tyr in constriction site 2, and to a lesser extent a conserved Phe in site 1. In the cytoplasm, urease hydrolyzes urea to form ammonia and carbamate, which decomposes to carbonic acid. UreI is fully open at pH 5.0 to facilitate urea influx, but closes at neutral pH, preventing over-alkalization. Glu 177 (H. pylori numbering) is present in urea channel proteins, but absent in the related amide channels, suggesting that it plays a role in urea specificity. Pssm-ID: 259834 Cd Length: 167 Bit Score: 87.37 E-value: 7.48e-22
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PLN02638 | PLN02638 | cellulose synthase A (UDP-forming), catalytic subunit |
28-159 | 3.58e-03 | ||||
cellulose synthase A (UDP-forming), catalytic subunit Pssm-ID: 215343 [Multi-domain] Cd Length: 1079 Bit Score: 37.60 E-value: 3.58e-03
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Blast search parameters | ||||
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