|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
5-305 |
5.30e-161 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 451.09 E-value: 5.30e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 5 LFDKLKTGLTKTRDGLQDKINEALnLAVSIDDDLYEELEEILIISDIGMDTTVEIIDRLKKKIRKEKINDPQMVKPALKE 84
Cdd:PRK10416 16 WFERLKKGLSKTRENFGEGINGLF-AKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 85 VIKDmLLEGDEETEEGANNQKEVLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIV 164
Cdd:PRK10416 95 ELAE-ILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVI 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 165 KQNEGSDPGAVVFDAVQAAKARGVDLLICDTAGRLHNKKNLMNELEKINRIIDREYSEAKKQTLLVLDGTTGQNAVIQAK 244
Cdd:PRK10416 174 AQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAK 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2050474067 245 QFMEVCPIDGIILTKLDGTAKGGVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEALF 305
Cdd:PRK10416 254 AFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALL 314
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
5-305 |
1.73e-160 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 449.09 E-value: 1.73e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 5 LFDKLKTGLTKTRDGLQDKINEALNLAVSIDDDLYEELEEILIISDIGMDTTVEIIDRLKKKIRKEKINDPQMVKPALKE 84
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 85 VIKDMLLEGDEETEEgANNQKEVLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLaaadtfraaAIDQLEVWSNRADVDIV 164
Cdd:COG0552 81 ELLEILDPVDKPLAI-EEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLaagdtfraaAIEQLEVWGERVGVPVI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 165 KQNEGSDPGAVVFDAVQAAKARGVDLLICDTAGRLHNKKNLMNELEKINRIIDREYSEAKKQTLLVLDGTTGQNAVIQAK 244
Cdd:COG0552 160 AQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAK 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2050474067 245 QFMEVCPIDGIILTKLDGTAKGGVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEALF 305
Cdd:COG0552 240 VFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALF 300
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
34-305 |
7.62e-115 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 332.30 E-value: 7.62e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 34 IDDDLYEELEEILIISDIGMDTTVEIIDRLKKKIRKEKINDPQMVKPALKEVIKDMLLEGDEETEEGANNQKE----VLL 109
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLELIVEEnkpnVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 110 VIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPGAVVFDAVQAAKARGVD 189
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 190 LLICDTAGRLHNKKNLMNELEKINRIIDREYSEAKKQTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKGGVV 269
Cdd:TIGR00064 162 VVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGII 241
|
250 260 270
....*....|....*....|....*....|....*.
gi 2050474067 270 ISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEALF 305
Cdd:TIGR00064 242 LSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
107-304 |
2.09e-100 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 292.94 E-value: 2.09e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 107 VLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPGAVVFDAVQAAKAR 186
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 187 GVDLLICDTAGRLHNKKNLMNELEKINRIIDREYSEAKKQTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKG 266
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 2050474067 267 GVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEAL 304
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
107-304 |
4.86e-86 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 256.31 E-value: 4.86e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 107 VLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPGAVVFDAVQAAKAR 186
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 187 GVDLLICDTAGRLHNKKNLMNELEKINRIIdreyseAKKQTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKG 266
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 2050474067 267 GVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEAL 304
Cdd:pfam00448 156 GAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
107-305 |
2.90e-84 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 251.56 E-value: 2.90e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 107 VLLVIGVNGVGKTTSIGKLAAK-NKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPGAVVFDAVQAAKA 185
Cdd:smart00962 3 VILLVGPNGVGKTTTIAKLAARlKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 186 RGVDLLICDTAGRLHNKKNLMNELEKINRIIDREyseakkQTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTKLDGTAK 265
Cdd:smart00962 83 RGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPD------EVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAK 156
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2050474067 266 GGVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEALF 305
Cdd:smart00962 157 GGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLL 196
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
5-305 |
5.30e-161 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 451.09 E-value: 5.30e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 5 LFDKLKTGLTKTRDGLQDKINEALnLAVSIDDDLYEELEEILIISDIGMDTTVEIIDRLKKKIRKEKINDPQMVKPALKE 84
Cdd:PRK10416 16 WFERLKKGLSKTRENFGEGINGLF-AKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 85 VIKDmLLEGDEETEEGANNQKEVLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIV 164
Cdd:PRK10416 95 ELAE-ILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVI 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 165 KQNEGSDPGAVVFDAVQAAKARGVDLLICDTAGRLHNKKNLMNELEKINRIIDREYSEAKKQTLLVLDGTTGQNAVIQAK 244
Cdd:PRK10416 174 AQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAK 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2050474067 245 QFMEVCPIDGIILTKLDGTAKGGVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEALF 305
Cdd:PRK10416 254 AFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALL 314
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
5-305 |
1.73e-160 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 449.09 E-value: 1.73e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 5 LFDKLKTGLTKTRDGLQDKINEALNLAVSIDDDLYEELEEILIISDIGMDTTVEIIDRLKKKIRKEKINDPQMVKPALKE 84
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 85 VIKDMLLEGDEETEEgANNQKEVLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLaaadtfraaAIDQLEVWSNRADVDIV 164
Cdd:COG0552 81 ELLEILDPVDKPLAI-EEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLaagdtfraaAIEQLEVWGERVGVPVI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 165 KQNEGSDPGAVVFDAVQAAKARGVDLLICDTAGRLHNKKNLMNELEKINRIIDREYSEAKKQTLLVLDGTTGQNAVIQAK 244
Cdd:COG0552 160 AQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAK 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2050474067 245 QFMEVCPIDGIILTKLDGTAKGGVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEALF 305
Cdd:COG0552 240 VFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALF 300
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
34-305 |
7.62e-115 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 332.30 E-value: 7.62e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 34 IDDDLYEELEEILIISDIGMDTTVEIIDRLKKKIRKEKINDPQMVKPALKEVIKDMLLEGDEETEEGANNQKE----VLL 109
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLELIVEEnkpnVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 110 VIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPGAVVFDAVQAAKARGVD 189
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 190 LLICDTAGRLHNKKNLMNELEKINRIIDREYSEAKKQTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKGGVV 269
Cdd:TIGR00064 162 VVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGII 241
|
250 260 270
....*....|....*....|....*....|....*.
gi 2050474067 270 ISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEALF 305
Cdd:TIGR00064 242 LSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
107-304 |
2.09e-100 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 292.94 E-value: 2.09e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 107 VLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPGAVVFDAVQAAKAR 186
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 187 GVDLLICDTAGRLHNKKNLMNELEKINRIIDREYSEAKKQTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKG 266
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 2050474067 267 GVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEAL 304
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
107-304 |
4.86e-86 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 256.31 E-value: 4.86e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 107 VLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPGAVVFDAVQAAKAR 186
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 187 GVDLLICDTAGRLHNKKNLMNELEKINRIIdreyseAKKQTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKG 266
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 2050474067 267 GVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEAL 304
Cdd:pfam00448 156 GAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
107-305 |
2.90e-84 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 251.56 E-value: 2.90e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 107 VLLVIGVNGVGKTTSIGKLAAK-NKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPGAVVFDAVQAAKA 185
Cdd:smart00962 3 VILLVGPNGVGKTTTIAKLAARlKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 186 RGVDLLICDTAGRLHNKKNLMNELEKINRIIDREyseakkQTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTKLDGTAK 265
Cdd:smart00962 83 RGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPD------EVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAK 156
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2050474067 266 GGVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEALF 305
Cdd:smart00962 157 GGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLL 196
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
36-305 |
1.65e-75 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 234.48 E-value: 1.65e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 36 DDLYEELEEILIISDIGMDTTVEIIDRLKKKIRKEKI----NDPQMVKPALKEVIKDMLLEG---DEETEEGANNQKEVL 108
Cdd:PRK14974 64 EDLLEELELELLESDVALEVAEEILESLKEKLVGKKVkrgeDVEEIVKNALKEALLEVLSVGdlfDLIEEIKSKGKPVVI 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 109 LVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPGAVVFDAVQAAKARGV 188
Cdd:PRK14974 144 VFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGI 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 189 DLLICDTAGRLHNKKNLMNELEKINRIIDREYseakkqTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKGGV 268
Cdd:PRK14974 224 DVVLIDTAGRMHTDANLMDELKKIVRVTKPDL------VIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGA 297
|
250 260 270
....*....|....*....|....*....|....*..
gi 2050474067 269 VISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEALF 305
Cdd:PRK14974 298 ALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLL 334
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
107-304 |
4.90e-68 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 210.31 E-value: 4.90e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 107 VLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPGAVVFDAVQAAKAR 186
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 187 GVDLLICDTAGRLHNKKNLMNELEKINRIidreysEAKKQTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKG 266
Cdd:cd03115 82 GYDVLLVDTAGRLQKDEPLMEELKKVKEV------ESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 2050474067 267 GVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEAL 304
Cdd:cd03115 156 GAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
6-301 |
3.23e-61 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 200.25 E-value: 3.23e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 6 FDKLKTGLTKTRDGL--QDKINEalnlavsidDDLYEELEEI---LIISDIGMDTTVEIIDRLKKKIRKEKIN---DP-- 75
Cdd:COG0541 2 FENLSERLQGAFKKLrgKGRLTE---------ENIKEALREVrraLLEADVNLKVVKDFIERVKERALGEEVLkslTPgq 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 76 QMVKPALKEVIKdmLLEGDEETEEGANNQKEVLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVW 155
Cdd:COG0541 73 QVIKIVHDELVE--LLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 156 SNRADVDIVKQNEGSDPGAVVFDAVQAAKARGVDLLICDTAGRLHNKKNLMNELEKINRIIDreyseaKKQTLLVLDGTT 235
Cdd:COG0541 151 GEQIGVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVN------PDETLLVVDAMT 224
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2050474067 236 GQNAVIQAKQFMEVCPIDGIILTKLDGTAKGGVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFA 301
Cdd:COG0541 225 GQDAVNVAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMA 290
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
107-302 |
2.25e-55 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 177.79 E-value: 2.25e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 107 VLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPGAVVFDAVQAAKAR 186
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 187 GVDLLICDTAGRLHNKKNLMNELEKINRIIDreyseaKKQTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKG 266
Cdd:cd18539 82 GFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARG 155
|
170 180 190
....*....|....*....|....*....|....*.
gi 2050474067 267 GVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAE 302
Cdd:cd18539 156 GAALSIRHVTGKPIKFIGVGEKIEDLEPFHPDRMAS 191
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
20-301 |
6.38e-49 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 168.46 E-value: 6.38e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 20 LQDKINEALNL---AVSIDDDLYEE----LEEILIISDIGMDTTVEIIDRLKKKIRKEK----IN-DPQMVKPALKEVIK 87
Cdd:PRK00771 1 LGESLRDALKKlagKSRIDEKTVKEvvkdIQRALLQADVNVKLVKELSKSIKERALEEEppkgLTpREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 88 dmlLEGDEETEEGANNQKEVLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQN 167
Cdd:PRK00771 81 ---LLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 168 EGSDPGAVVFDAVQAAKARgvDLLICDTAGRLHNKKNLMNELEKINRIIDREYSeakkqtLLVLDGTTGQNAVIQAKQFM 247
Cdd:PRK00771 158 DNKDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEV------LLVIDATIGQQAKNQAKAFH 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2050474067 248 EVCPIDGIILTKLDGTAKGGVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFA 301
Cdd:PRK00771 230 EAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFI 283
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
107-300 |
2.77e-43 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 146.95 E-value: 2.77e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 107 VLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPGAVVFDAVQAAKAR 186
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKKE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 187 GVDLLICDTAGRLHNKKNLMNELEKINRIIDREyseakkQTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKG 266
Cdd:cd17875 82 KFDIIIVDTSGRHKQEEELFEEMKQISDAVKPD------EVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKG 155
|
170 180 190
....*....|....*....|....*....|....
gi 2050474067 267 GVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESF 300
Cdd:cd17875 156 GGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRF 189
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
31-304 |
3.89e-33 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 126.10 E-value: 3.89e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 31 AVSIDDD----LYEELEEILIISDIGMDTTVEIIDRLKKKIRKEK----INDPQMVKPAL-KEVIKdmLLEGDEETEEGA 101
Cdd:TIGR01425 19 ATVIDEEvintMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDiasgINKRKLIQDAVfEELCN--LVDPGVEAFTPK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 102 NNQKEVLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPGAVVFDAVQ 181
Cdd:TIGR01425 97 KGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIASEGVE 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 182 AAKARGVDLLICDTAGRLHNKKNLMNELEKInriidreySEAKK--QTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTK 259
Cdd:TIGR01425 177 KFRKEKFDIIIVDTSGRHKQEKELFEEMQQV--------REAIKpdSIIFVMDGSIGQAAFGQAKAFKDSVEVGSVIITK 248
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2050474067 260 LDGTAKGGVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEAL 304
Cdd:TIGR01425 249 LDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKL 293
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
107-304 |
4.54e-29 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 110.01 E-value: 4.54e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 107 VLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPGAVVFDAVQAAKAR 186
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 187 GVDLLICDTAGRLHNKKNLMNELEKINRIIDREYSeakkqtLLVLDGTTGQNAVIQAKQF----------MEVCPIDGII 256
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLV------LFVGEALVGNDAVDQLKKFnqaladyspsDNPRLIDGIV 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2050474067 257 LTKLDGTA-KGGVVISIKQSLNIPVKYIGVGEGIDDLQKFDAESFAEAL 304
Cdd:cd17876 156 LTKFDTIDdKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
58-305 |
1.43e-24 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 101.48 E-value: 1.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 58 EIIDRLKKKIRKEKinDPQMVKPALKEVIKDMLlegdEETEEGANNQKEVLLVIGVNGVGKTTSIGKLAAKNK-NEGKKV 136
Cdd:COG1419 123 ELARELLEKLPEDL--SAEEAWRALLEALARRL----PVAEDPLLDEGGVIALVGPTGVGKTTTIAKLAARFVlRGKKKV 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 137 LLaaadtfraaaI----------DQLEVWSNRADVDIVkqnegsdpgaVVFDAVQAAKA----RGVDLLICDTAGRLHNK 202
Cdd:COG1419 197 AL----------IttdtyrigavEQLKTYARILGVPVE----------VAYDPEELKEAlerlRDKDLVLIDTAGRSPRD 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 203 KNLMNELEKINRIIDReyseakKQTLLVLDGTTgQNAVIQ--AKQFmEVCPIDGIILTKLDGTAKGGVVISIKQSLNIPV 280
Cdd:COG1419 257 PELIEELKALLDAGPP------IEVYLVLSATT-KYEDLKeiVEAF-SSLGLDGLILTKLDETASLGSILNLLIRTGLPL 328
|
250 260
....*....|....*....|....*.
gi 2050474067 281 KYIGVGEGI-DDLQKFDAESFAEALF 305
Cdd:COG1419 329 SYITNGQRVpEDIEVADPERLARLLL 354
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
107-304 |
3.57e-23 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 94.15 E-value: 3.57e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 107 VLLVIGVNGVGKTTSIGKLAAKNK-NEGKKVLLAAADTFRAAAIDQLEVWSNRADVdivkqnegsdPGAVVFDAVQAAKA 185
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLKTYAEIMGI----------PVEVAEDPEDLADA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 186 ----RGVDLLICDTAGRLHNKKNLMNELEKInriIDREYSEakkQTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTKLD 261
Cdd:cd17873 72 lerlSDRDLILIDTAGRSPRDKEQLEELKEL---LGAGEDI---EVHLVLSATTKAKDLKEIIERFSPLGYRGLILTKLD 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2050474067 262 GTAKGGVVISIKQSLNIPVKYIGVGEGI-DDLQKFDAESFAEAL 304
Cdd:cd17873 146 ETTSLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
36-305 |
2.14e-20 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 90.72 E-value: 2.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 36 DDLYEELEEILIisDIGMDTtvEIIDRLKKKIRKEKINDPQMVKPALKEVIKDMLLEGDEETEEgannQKEVLLVIGVNG 115
Cdd:PRK05703 160 PPEFAELYKRLK--RSGLSP--EIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRVEDILK----QGGVVALVGPTG 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 116 VGKTTSIGKLAAK--NKNEGKKVLLaaadtfraaaI----------DQLEVWSNRADVdivkqnegsdPGAVVFDAVQAA 183
Cdd:PRK05703 232 VGKTTTLAKLAARyaLLYGKKKVAL----------ItldtyrigavEQLKTYAKIMGI----------PVEVVYDPKELA 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 184 KA----RGVDLLICDTAGRLHNKKNLMNELEKInriidREYSEAKKQTLLVLdGTTGQNAVIQA--KQFmEVCPIDGIIL 257
Cdd:PRK05703 292 KAleqlRDCDVILIDTAGRSQRDKRLIEELKAL-----IEFSGEPIDVYLVL-SATTKYEDLKDiyKHF-SRLPLDGLIF 364
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2050474067 258 TKLDGTAKGGVVISIKQSLNIPVKYIGVGEGI-DDLQKFDAESFAEALF 305
Cdd:PRK05703 365 TKLDETSSLGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLL 413
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
34-90 |
4.11e-11 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 57.95 E-value: 4.11e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 34 IDDDLYEELEEILIISDIGMDTTVEIIDRLKKKIRKE---KINDPQMVKPALKEVIKDML 90
Cdd:smart00963 18 DDEELLEELEEALLEADVGVEVVKEIIERVKEKAKGEvlkGLTPKQEVKKILKEELVKIL 77
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
20-84 |
3.85e-10 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 55.17 E-value: 3.85e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2050474067 20 LQDKINEALNLAVS---IDDDLYEE----LEEILIISDIGMDTTVEIIDRLKKK-IRKEKINDPQMVKPALKE 84
Cdd:pfam02881 1 LGEKLSSLFKGLRGkgkIDEEDLEEalkeLEEALLEADVGVEVVKKIIERLREKaVGEKKLKPPQEVKKILKE 73
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
103-289 |
3.90e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 60.36 E-value: 3.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 103 NQKEVLLVIGVNGVGKTTSIGKLAAK-NKNEGKKVLLAAADTFRAAAIDQLEVWsnradvdivkqnegSDPGAVVFDAVQ 181
Cdd:PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKyFLHMGKSVSLYTTDNYRIAAIEQLKRY--------------ADTMGMPFYPVK 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 182 AAK------AR-GVDLLICDTAGRLHNKknlMNELEKINRIIDREYSEAKKQTLLVLDGTTGQNAVIQAKQFMEVCPIDG 254
Cdd:PRK12724 287 DIKkfketlARdGSELILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRR 363
|
170 180 190
....*....|....*....|....*....|....*
gi 2050474067 255 IILTKLDGTAKGGVVISIKQSLNIPVKYIGVGEGI 289
Cdd:PRK12724 364 ILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEV 398
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
107-291 |
1.36e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 55.51 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 107 VLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKqneGSDPgAVVFDAVQ-AAKA 185
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV---ATSP-AELEEAVQyMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 186 RGVDLLICDTAGRLHNKKNLMNELEKINRIIDREYSeakkqTLLVLDGTTGQNAVIQAKQFMEVcPIDGIILTKLDGTAK 265
Cdd:PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLT-----CFTFSSGMKSADVMTILPKLAEI-PIDGFIITKMDETTR 357
|
170 180
....*....|....*....|....*.
gi 2050474067 266 GGVVISIKQSLNIPVKYIGVGEGIDD 291
Cdd:PRK12726 358 IGDLYTVMQETNLPVLYMTDGQNITE 383
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
30-138 |
1.54e-08 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 54.65 E-value: 1.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 30 LAVSIDDDLYEELEEILIISDIGMDTTVEIIDRLKKKirkekiNDPQMVKPALKEVIKDMLLEGDEETEegANNQKEVLL 109
Cdd:TIGR03499 127 LAWLQRPPERAKLYERLLEAGVSEELARELLEKLPED------ADAEDAWRWLREALEGMLPVKPEEDP--ILEQGGVIA 198
|
90 100 110
....*....|....*....|....*....|.
gi 2050474067 110 VIGVNGVGKTTSIGKLAAK--NKNEGKKVLL 138
Cdd:TIGR03499 199 LVGPTGVGKTTTLAKLAARfaLEHGKKKVAL 229
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
104-230 |
2.67e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.99 E-value: 2.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 104 QKEVLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVwsnradVDIVKQNEGSDPGAVVFDAVQAA 183
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL------IIVGGKKASGSGELRLRLALALA 74
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2050474067 184 KARGVDLLICDTAGRLHNKKNLMNELEKINRIIDREYSEAKKQTLLV 230
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
98-299 |
1.93e-06 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 49.22 E-value: 1.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 98 EEGAnnqkeVLLVIGVNGVGKTTSIGKLAAK--NKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDpgav 175
Cdd:PRK12727 348 ERGG-----VIALVGPTGAGKTTTIAKLAQRfaAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES---- 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 176 VFDAVQaaKARGVDLLICDTAGRLHNKKNLMNELekinriidrEYSEAKKQ--TLLVLDGTTGQNAVIQ-AKQFMEVCPi 252
Cdd:PRK12727 419 LLDLLE--RLRDYKLVLIDTAGMGQRDRALAAQL---------NWLRAARQvtSLLVLPANAHFSDLDEvVRRFAHAKP- 486
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2050474067 253 DGIILTKLDGTAKGGVVISIKQSLNIPVKYIGVGEGI-DDLQKFDAES 299
Cdd:PRK12727 487 QGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVpDDLHRANAAS 534
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
96-291 |
2.70e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 48.18 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 96 ETEEGANNQKEVLLVIGVNGVGKTTSIGKLAAK--NKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDPg 173
Cdd:PRK14722 128 DSEDALMERGGVFALMGPTGVGKTTTTAKLAARcvMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL- 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 174 avvfdAVQAAKARGVDLLICDTAGRLHNKKNLMNELEKINRiidreySEAKKQTLLVLDGTT---GQNAVIQAKQFMEVC 250
Cdd:PRK14722 207 -----QLALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHG------ADTPVQRLLLLNATShgdTLNEVVQAYRSAAGQ 275
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2050474067 251 P------IDGIILTKLDGTAKGGVVISIKQSLNIPVKYIGVGEGIDD 291
Cdd:PRK14722 276 PkaalpdLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
54-289 |
3.28e-06 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 47.82 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 54 DTTVEIIDRLKKKIRKEKINDPQMVKPALKEVIKDMllEGDEETEEGANNQKEVLLVIGVNGVGKTTSIGKLAAKNKNEG 133
Cdd:PRK06731 26 DVEQYFIHAYAEKLKVKFENATMITEEVIEYILEDM--SSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 134 KKVLLAAADTFRAAAIDQLEVWSNRADVDIVK-QNEGSDPGAVVFDAVQAAkargVDLLICDTAGRLHNKKNLMNELEKI 212
Cdd:PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAvRDEAAMTRALTYFKEEAR----VDYILIDTAGKNYRASETVEEMIET 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2050474067 213 NRIIDREYseakkqTLLVLDGTTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKGGVVISIKQSLNIPVKYIGVGEGI 289
Cdd:PRK06731 180 MGQVEPDY------ICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 250
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
83-289 |
3.60e-06 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 48.14 E-value: 3.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 83 KEVIKDML--LEGDEETEEGANNQKEVLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLLAAADTFRAAAIDQLEVWSNRAD 160
Cdd:PRK11889 217 EEVIEYILedMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 161 VDIVK-QNEGSDPGAVVFDAVQAAkargVDLLICDTAGRLHNKKNLMNELEKINRIIDREYseakkqTLLVLDGTTGQNA 239
Cdd:PRK11889 297 FEVIAvRDEAAMTRALTYFKEEAR----VDYILIDTAGKNYRASETVEEMIETMGQVEPDY------ICLTLSASMKSKD 366
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2050474067 240 VIQAKQFMEVCPIDGIILTKLDGTAKGGVVISIKQSLNIPVKYIGVGEGI 289
Cdd:PRK11889 367 MIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
104-305 |
1.33e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 46.72 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 104 QKEVLLVIGVNGVGKTTSIGKLAAKN-KNEGK-KVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNEGSDpgavVFDAVQ 181
Cdd:PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCvAREGAdQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD----LRFALA 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 182 AAKARgvDLLICDTAGRLHNKKNLMnelEKINRIIDreySEAKKQTLLVLDGTT-GQ--NAVIQAKQFMEVCPIDGIILT 258
Cdd:PRK14723 260 ALGDK--HLVLIDTVGMSQRDRNVS---EQIAMLCG---VGRPVRRLLLLNAAShGDtlNEVVHAYRHGAGEDVDGCIIT 331
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2050474067 259 KLDGTAKGGVVISIKQSLNIPVKYIGVGEGI-DDLQKFDAESFAEALF 305
Cdd:PRK14723 332 KLDEATHLGPALDTVIRHRLPVHYVSTGQKVpEHLELAQADELVDRAF 379
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
20-289 |
1.74e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 45.66 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 20 LQDKINEALNLAVSIDDDLY-------EELEEILIISDIGMDTTVEIIDRLKKKIRKEKINDPQMVKPALKEVIKDMLLE 92
Cdd:PRK12723 85 IEDVLKEVKSLKNELAHKKEeinhptiLKIEDILRENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTIKC 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 93 GDEETEegaNNQKEVLLVIGVNGVGKTTSIGKLAA----KNKNEGKKVLLAAADTFRAAAIDQLEVWSNRADVDIVKQNE 168
Cdd:PRK12723 165 SGSIID---NLKKRVFILVGPTGVGKTTTIAKLAAiygiNSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2050474067 169 GSDPGAVVFDavqaakARGVDLLICDTAGRlhNKKNLMNeLEKINRIIDREYSEAKKQtlLVLDGTTGQNAVIQAKQFME 248
Cdd:PRK12723 242 FKDLKEEITQ------SKDFDLVLVDTIGK--SPKDFMK-LAEMKELLNACGRDAEFH--LAVSSTTKTSDVKEIFHQFS 310
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2050474067 249 VCPIDGIILTKLDGTAKGGVVISIKQSLNIPVKYIGVGEGI 289
Cdd:PRK12723 311 PFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIV 351
|
|
| arsen_driv_ArsA |
TIGR04291 |
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family ... |
98-138 |
7.94e-03 |
|
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).
Pssm-ID: 275109 [Multi-domain] Cd Length: 566 Bit Score: 37.76 E-value: 7.94e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2050474067 98 EEGANNQKEVLLVIGVNGVGKTTSIGKLAAKNKNEGKKVLL 138
Cdd:TIGR04291 314 DEIAKSEKGLIMTMGKGGVGKTTVAAAIAVRLANKGLDVHL 354
|
|
| |
