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Conserved domains on  [gi|2052573655|ref|WP_216056681|]
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polysaccharide biosynthesis tyrosine autokinase [Psychrosphaera sp. F3M07]

Protein Classification

GumC family protein( domain architecture ID 11459884)

GumC family protein may be involved in the production and transport of exopolysaccharides

EC:  2.7.10.-
Gene Ontology:  GO:0045226
PubMed:  8626297|9434192|22889913

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1-700 2.66e-82

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 275.36  E-value: 2.66e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655   1 MEQVNENYK--DDEIDLGELTKVLWHRKWFILIFVILTSLLASIFISQVPNVYQSSVLIMFKkaTQSADPLQSLISGSIT 78
Cdd:COG3206     1 MNESSSAPPeeEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVE--PQSSDVLLSGLSSLSA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  79 AADNTETELELIKSRRFAGEIVDSLALDKQPEFDiifpentsmtiddfnKLRRKTTIDNVLSNISVQQKSGTDLISISYQ 158
Cdd:COG3206    79 SDSPLETQIEILKSRPVLERVVDKLNLDEDPLGE---------------EASREAAIERLRKNLTVEPVKGSNVIEISYT 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 159 STNPKLAAQIANEVGSTFVTFKEQLMAGKQKAGSKLIVDKIKSVQQSLDKAEFKIVEYQNEHDFIDIQTAIAFSNTKLVK 238
Cdd:COG3206   144 SPDPELAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSE 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 239 MHAQKQVLDSEIEQSNILKSHIikSKNNVDALLAIPMLAKSDIVNSGKDEIKAQQKIFDKIKLRYGKKHPKYIEANRLLN 318
Cdd:COG3206   224 LESQLAEARAELAEAEARLAAL--RAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIA 301

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 319 DAKSNLLSEITKQVNQIDKQLQFYQDNLVFVEKEIEENTIRLRQLGVIEFDYQKLKREFDAYLTLYEALVKKQNESDLMQ 398
Cdd:COG3206   302 ALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAE 381

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 399 DLsNTSNIILVETAEENSSPVKPKRKLMLVLAVLGSFMVSVLIVFIEVMLGDKVIQFRRMALKFKTKVIGTVPKIKMKKS 478
Cdd:COG3206   382 AL-TVGNVRVIDPAVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPLPPLKSKRE 460

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 479 LKNDVlthLDRAKHAGFIEAIRSIRTNILLDKVRSKQKVIAITSINPNDGKSSLSIQLADCFSELEDVVLIDADLRFPSI 558
Cdd:COG3206   461 RRRAR---LALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLLLLLLLLLD 537

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 559 AKALGEDKDRPGLTNLIAKSHTLEQSIIKQEQYKFDVIASGNVPKNPLVFLSNPRLQGIITYLKSHYERVILECPPIMSV 638
Cdd:COG3206   538 LLLLLLLLLLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLLLSDDLILDLV 617

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2052573655 639 SDAYVISKHVDSVYLVVDAEKTDTNMLGNVLEELQQANVIVGGILINKVKESNNYYSTKYYS 700
Cdd:COG3206   618 PLLAALLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGYYYY 679
 
Name Accession Description Interval E-value
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1-700 2.66e-82

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 275.36  E-value: 2.66e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655   1 MEQVNENYK--DDEIDLGELTKVLWHRKWFILIFVILTSLLASIFISQVPNVYQSSVLIMFKkaTQSADPLQSLISGSIT 78
Cdd:COG3206     1 MNESSSAPPeeEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVE--PQSSDVLLSGLSSLSA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  79 AADNTETELELIKSRRFAGEIVDSLALDKQPEFDiifpentsmtiddfnKLRRKTTIDNVLSNISVQQKSGTDLISISYQ 158
Cdd:COG3206    79 SDSPLETQIEILKSRPVLERVVDKLNLDEDPLGE---------------EASREAAIERLRKNLTVEPVKGSNVIEISYT 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 159 STNPKLAAQIANEVGSTFVTFKEQLMAGKQKAGSKLIVDKIKSVQQSLDKAEFKIVEYQNEHDFIDIQTAIAFSNTKLVK 238
Cdd:COG3206   144 SPDPELAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSE 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 239 MHAQKQVLDSEIEQSNILKSHIikSKNNVDALLAIPMLAKSDIVNSGKDEIKAQQKIFDKIKLRYGKKHPKYIEANRLLN 318
Cdd:COG3206   224 LESQLAEARAELAEAEARLAAL--RAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIA 301

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 319 DAKSNLLSEITKQVNQIDKQLQFYQDNLVFVEKEIEENTIRLRQLGVIEFDYQKLKREFDAYLTLYEALVKKQNESDLMQ 398
Cdd:COG3206   302 ALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAE 381

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 399 DLsNTSNIILVETAEENSSPVKPKRKLMLVLAVLGSFMVSVLIVFIEVMLGDKVIQFRRMALKFKTKVIGTVPKIKMKKS 478
Cdd:COG3206   382 AL-TVGNVRVIDPAVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPLPPLKSKRE 460

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 479 LKNDVlthLDRAKHAGFIEAIRSIRTNILLDKVRSKQKVIAITSINPNDGKSSLSIQLADCFSELEDVVLIDADLRFPSI 558
Cdd:COG3206   461 RRRAR---LALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLLLLLLLLLD 537

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 559 AKALGEDKDRPGLTNLIAKSHTLEQSIIKQEQYKFDVIASGNVPKNPLVFLSNPRLQGIITYLKSHYERVILECPPIMSV 638
Cdd:COG3206   538 LLLLLLLLLLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLLLSDDLILDLV 617

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2052573655 639 SDAYVISKHVDSVYLVVDAEKTDTNMLGNVLEELQQANVIVGGILINKVKESNNYYSTKYYS 700
Cdd:COG3206   618 PLLAALLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGYYYY 679
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 497-686 1.06e-52

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 180.46  E-value: 1.06e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 497 EAIRSIRTNILLDKVRSKQKVIAITSINPNDGKSSLSIQLADCFSEL-EDVVLIDADLRFPSIAKALGEDKdRPGLTNLI 575
Cdd:cd05387     1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSgKRVLLIDADLRRPSLHRLLGLPN-EPGLSEVL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 576 AKSHTLEQSIIKQEQYKFDVIASGNVPKNPLVFLSNPRLQGIITYLKSHYERVILECPPIMSVSDAYVISKHVDSVYLVV 655
Cdd:cd05387    80 SGQASLEDVIQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLVV 159

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2052573655 656 DAEKTDTNMLGNVLEELQQANVIVGGILINK 686
Cdd:cd05387   160 RAGKTRRREVKEALERLEQAGAKVLGVVLNK 190
eps_transp_fam TIGR01005
exopolysaccharide transport protein family; The model describes the exopolysaccharide ...
 10-701 6.23e-49

exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273391 [Multi-domain]  Cd Length: 764  Bit Score: 184.15  E-value: 6.23e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  10 DDEIDLGELTKVLWHRKWFILIFVILTSLLASIFISQVPNVYQSSVLIMFKKATQSADPLQSLISGSITAADNTETELEL 89
Cdd:TIGR01005   1 DGEIDLDRLLAALFANARLIAAFAAAFIALGAAYAFFARPVYEADIMILLDDNLNKAAEEEGDPSNLFDLDTDAAAAIEI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  90 IKSRRFAGEIVDSLAL--DKQPEFDIIFPENT------------------SMTIDDFNKLRRKTTIDNVLSNISVQQKSG 149
Cdd:TIGR01005  81 LKSGELAGKAVDKLHLseNAKILNPPRFPVDLigawiksaaglfsepggfDLGEEAAGNERIDKAAADIPEALAGEPFKL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 150 TDLISISYQSTNPKLAAQIANEVGSTFVT--------FKEQLMAGKQKAGSKLIVD-KIKSVQQSLDKAEF----KIVEY 216
Cdd:TIGR01005 161 ISLGAGAFRLEDKLLAAPIAGGVAEALEAdqlianfeAQENALTAKAEALFDLEQDsQAAALEMAHDKAEIaekaAQGEI 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 217 QNEHDFIDIQTAIAFSNTKLVKMHAQKQVLDSEIEQS--NILKSHIIKSKNNVDallaipmlakSDIVNSGKDEIKAQQK 294
Cdd:TIGR01005 241 IGEAQLADLNPALIAAIADQAAAEARADNIKRIADEAeeNAVFLAGILPKEGDE----------LEIADLKTNELRNGKG 310

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 295 IFDkIKLRYGKKHPKYI---EANRLLNDAKSNLLSEIT---KQVNQIDKQLQfyqdnlVFVEKEIEENTIRLRQLGVIEF 368
Cdd:TIGR01005 311 EFD-LSDEFGADHPEAVcsaPSLQELKAKIAEELQQFTashKGEQAIAQQIE------ESLRGKINGIAGKLKDAPEIEQ 383

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 369 DYQKLKREFDAYLTLYEALVKKQNESDLMQDLSnTSNIILVETAEENSSPVKPKRKLMLVLAVLGSFMVSVLIVFIEVML 448
Cdd:TIGR01005 384 DLRELEQDAAADKELYESLLGDMEQAKLQKAFK-IAKARLIDEAAVPEEPSKPKKLMTLALAAVLGMMLGGAAAAFLEAL 462

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 449 GDKVIQFRRMALKFKTKVIGTVP--KIKMKKSLKndvLTHLDR-------------------------AKHAGFIEAIRS 501
Cdd:TIGR01005 463 EGGFRDEGDIEEHLGHRSLATVPllDTQMDKKAQ---LTHAHFgsvkrhdeavddtmpfqllarivpdAPRSTFAEAFRN 539

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 502 IRTNILLDKVRSKQKVIAITSINPNDGKSSLSIQLADCFSEL-EDVVLIDADLRFPSIAKALGEDKdRPGLTNLIAKSHT 580
Cdd:TIGR01005 540 AKLACDFALADAENNLIAIAGALPDEGKSFIAANFAALIAAGgKRTLLIDADIRKGGLHQMFGKAP-KPGLLDLLAGEAS 618

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 581 LEQSIIKQEQYKFDVIASGNV---PKNPLVFLSNPRLQGIITYLKSHYERVILECPPIMSVSDAYVISKHVDSVYLVVDA 657
Cdd:TIGR01005 619 IEAGIHRDQRPGLAFIAAGGAshfPHNPNELLANPAMAELIDNARNAFDLVLVDLAALAAVADAAAFAALADGILFVTEF 698

                         730       740       750       760
                  ....*....|....*....|....*....|....*....|....
gi 2052573655 658 EKTDTNMLGNVLEELQQANVIVGGILINKVkESNNYYSTKYYSR 701
Cdd:TIGR01005 699 ERSPLGEIRDLIHQEPHANSDVLGVIFNAL-DMNELGKYGDFDG 741
PRK11519 PRK11519
tyrosine-protein kinase Wzc;
11-700 8.81e-38

tyrosine-protein kinase Wzc;


Pssm-ID: 183173 [Multi-domain]  Cd Length: 719  Bit Score: 150.30  E-value: 8.81e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  11 DEIDLGELTKVLWHRKWFILIFVILTSLLASIFISQVPNVYQSSVLIMFKKATQSAdPLQSLISGSITAADNTETELELI 90
Cdd:PRK11519   16 DEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSGNS-LVQDIGSALANKPPASDAEIQLI 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  91 KSRRFAGEIVDSLALD--------------------KQPE-------------------FDIIFPENTSMTIDD------ 125
Cdd:PRK11519   95 RSRLVLGKTVDDLDLDiavskntfpifgagwdrlmgRQNEtvkvttfnrpkemadqvftLNVLDDKNYQLSSDGgfsarg 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 126 ---------------------------FNKLRRKTTIDNVLSNISVQQK-SGTDLISISYQSTNPKLAAQIANEVGSTFV 177
Cdd:PRK11519  175 qvgqmlkkdgvtlmveaiharpgteftVTKYSTLGMINNLQNNLTVTENgKDTGVLSLTYTGEDREQIRDILNSITRNYL 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 178 tfkEQLMAGKQKAGSK---LIVDKIKSVQQSLDKAEFKIVEYQNEHDFIDIQTAiafsntklvkmhaQKQVLDSEIeqsn 254
Cdd:PRK11519  255 ---EQNIERKSEEASKslaFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLE-------------AKAVLDSMV---- 314

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 255 ilkshiiksknNVDALLaipmlaksdivnsgkDEIKAQQKIFDKIklrYGKKHPKY---IEANRLLNDAKSnllsEITKQ 331
Cdd:PRK11519  315 -----------NIDAQL---------------NELTFKEAEISKL---YTKEHPAYrtlLEKRKALEDEKA----KLNGR 361

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 332 VNQIDKQLQfyqdnlvfvekEIeentirlrqlgviefdyQKLKREFDAYLTLYEALVKKQNESDLMQdLSNTSNIILVET 411
Cdd:PRK11519  362 VTAMPKTQQ-----------EI-----------------VRLTRDVESGQQVYMQLLNKQQELKITE-ASTVGDVRIVDP 412

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 412 AEENSSPVKPKRKLMLVLAVLGSFMVSVLIVFIEVMLgDKVIQFRRMALKFKTKVIGTVP------------KIKMKKSL 479
Cdd:PRK11519  413 AITQPGVLKPKKALIILGAIILGLMLSIVGVLLRSLF-NRGIESPQVLEEHGISVYASIPlsewqkardsvkTIKGIKRY 491

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 480 KNDVLTHL----DRAkhagfIEAIRSIRTNILLDKVRSKQKVIAITSINPNDGKSSLSIQLADCFSEL-EDVVLIDADLR 554
Cdd:PRK11519  492 KQSQLLAVgnptDLA-----IEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTnKRVLLIDCDMR 566

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 555 FPSIAKALGEDKDRpGLTNLIAKSHTLEQSIIKQEQYKFDVIASGNVPKNPLVFLSNPRLQGIITYLKSHYERVILECPP 634
Cdd:PRK11519  567 KGYTHELLGTNNVN-GLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPP 645

                         730       740       750       760       770       780       790
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 635 IMSVSDAYVISKHVDSVYLVVDAEktdTNMLGNV---LEELQQANVIVGGILINKV-KESNNYYSTKYYS 700
Cdd:PRK11519  646 ILAVTDAAIVGRHVGTTLMVARYA---VNTLKEVetsLSRFEQNGIPVKGVILNSIfRRASAYQDYGYYE 712
CbiA pfam01656
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ...
 518-693 6.90e-11

CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.


Pssm-ID: 426369 [Multi-domain]  Cd Length: 228  Bit Score: 62.75  E-value: 6.90e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 518 IAITSINPNDGKSSLSIQLADCFSELE-DVVLIDADLRFPSIAKALGEDKDRPGLTNL---IAKSHTLEQSIIK--QEQY 591
Cdd:pfam01656   1 IAIAGTKGGVGKTTLAANLARALARRGlRVLLIDLDPQSNNSSVEGLEGDIAPALQALaegLKGRVNLDPILLKekSDEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 592 KFDVIASGNV----PKNPLVFLSNPRLQGIITYLKSHYERVILECPP------IMSVSDAYVISKHVD-SVYLVVDAEKT 660
Cdd:pfam01656  81 GLDLIPGNIDlekfEKELLGPRKEERLREALEALKEDYDYVIIDGAPglgellRNALIAADYVIIPLEpEVILVEDAKRL 160

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2052573655 661 dTNMLGNVLEELQQANVIVGGILINKVKESNNY 693
Cdd:pfam01656 161 -GGVIAALVGGYALLGLKIIGVVLNKVDGDNHG 192
 
Name Accession Description Interval E-value
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1-700 2.66e-82

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 275.36  E-value: 2.66e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655   1 MEQVNENYK--DDEIDLGELTKVLWHRKWFILIFVILTSLLASIFISQVPNVYQSSVLIMFKkaTQSADPLQSLISGSIT 78
Cdd:COG3206     1 MNESSSAPPeeEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVE--PQSSDVLLSGLSSLSA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  79 AADNTETELELIKSRRFAGEIVDSLALDKQPEFDiifpentsmtiddfnKLRRKTTIDNVLSNISVQQKSGTDLISISYQ 158
Cdd:COG3206    79 SDSPLETQIEILKSRPVLERVVDKLNLDEDPLGE---------------EASREAAIERLRKNLTVEPVKGSNVIEISYT 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 159 STNPKLAAQIANEVGSTFVTFKEQLMAGKQKAGSKLIVDKIKSVQQSLDKAEFKIVEYQNEHDFIDIQTAIAFSNTKLVK 238
Cdd:COG3206   144 SPDPELAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSE 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 239 MHAQKQVLDSEIEQSNILKSHIikSKNNVDALLAIPMLAKSDIVNSGKDEIKAQQKIFDKIKLRYGKKHPKYIEANRLLN 318
Cdd:COG3206   224 LESQLAEARAELAEAEARLAAL--RAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIA 301

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 319 DAKSNLLSEITKQVNQIDKQLQFYQDNLVFVEKEIEENTIRLRQLGVIEFDYQKLKREFDAYLTLYEALVKKQNESDLMQ 398
Cdd:COG3206   302 ALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAE 381

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 399 DLsNTSNIILVETAEENSSPVKPKRKLMLVLAVLGSFMVSVLIVFIEVMLGDKVIQFRRMALKFKTKVIGTVPKIKMKKS 478
Cdd:COG3206   382 AL-TVGNVRVIDPAVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPLPPLKSKRE 460

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 479 LKNDVlthLDRAKHAGFIEAIRSIRTNILLDKVRSKQKVIAITSINPNDGKSSLSIQLADCFSELEDVVLIDADLRFPSI 558
Cdd:COG3206   461 RRRAR---LALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLLLLLLLLLD 537

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 559 AKALGEDKDRPGLTNLIAKSHTLEQSIIKQEQYKFDVIASGNVPKNPLVFLSNPRLQGIITYLKSHYERVILECPPIMSV 638
Cdd:COG3206   538 LLLLLLLLLLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLLLSDDLILDLV 617

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2052573655 639 SDAYVISKHVDSVYLVVDAEKTDTNMLGNVLEELQQANVIVGGILINKVKESNNYYSTKYYS 700
Cdd:COG3206   618 PLLAALLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGYYYY 679
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 497-686 1.06e-52

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 180.46  E-value: 1.06e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 497 EAIRSIRTNILLDKVRSKQKVIAITSINPNDGKSSLSIQLADCFSEL-EDVVLIDADLRFPSIAKALGEDKdRPGLTNLI 575
Cdd:cd05387     1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSgKRVLLIDADLRRPSLHRLLGLPN-EPGLSEVL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 576 AKSHTLEQSIIKQEQYKFDVIASGNVPKNPLVFLSNPRLQGIITYLKSHYERVILECPPIMSVSDAYVISKHVDSVYLVV 655
Cdd:cd05387    80 SGQASLEDVIQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLVV 159

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2052573655 656 DAEKTDTNMLGNVLEELQQANVIVGGILINK 686
Cdd:cd05387   160 RAGKTRRREVKEALERLEQAGAKVLGVVLNK 190
eps_transp_fam TIGR01005
exopolysaccharide transport protein family; The model describes the exopolysaccharide ...
 10-701 6.23e-49

exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273391 [Multi-domain]  Cd Length: 764  Bit Score: 184.15  E-value: 6.23e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  10 DDEIDLGELTKVLWHRKWFILIFVILTSLLASIFISQVPNVYQSSVLIMFKKATQSADPLQSLISGSITAADNTETELEL 89
Cdd:TIGR01005   1 DGEIDLDRLLAALFANARLIAAFAAAFIALGAAYAFFARPVYEADIMILLDDNLNKAAEEEGDPSNLFDLDTDAAAAIEI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  90 IKSRRFAGEIVDSLAL--DKQPEFDIIFPENT------------------SMTIDDFNKLRRKTTIDNVLSNISVQQKSG 149
Cdd:TIGR01005  81 LKSGELAGKAVDKLHLseNAKILNPPRFPVDLigawiksaaglfsepggfDLGEEAAGNERIDKAAADIPEALAGEPFKL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 150 TDLISISYQSTNPKLAAQIANEVGSTFVT--------FKEQLMAGKQKAGSKLIVD-KIKSVQQSLDKAEF----KIVEY 216
Cdd:TIGR01005 161 ISLGAGAFRLEDKLLAAPIAGGVAEALEAdqlianfeAQENALTAKAEALFDLEQDsQAAALEMAHDKAEIaekaAQGEI 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 217 QNEHDFIDIQTAIAFSNTKLVKMHAQKQVLDSEIEQS--NILKSHIIKSKNNVDallaipmlakSDIVNSGKDEIKAQQK 294
Cdd:TIGR01005 241 IGEAQLADLNPALIAAIADQAAAEARADNIKRIADEAeeNAVFLAGILPKEGDE----------LEIADLKTNELRNGKG 310

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 295 IFDkIKLRYGKKHPKYI---EANRLLNDAKSNLLSEIT---KQVNQIDKQLQfyqdnlVFVEKEIEENTIRLRQLGVIEF 368
Cdd:TIGR01005 311 EFD-LSDEFGADHPEAVcsaPSLQELKAKIAEELQQFTashKGEQAIAQQIE------ESLRGKINGIAGKLKDAPEIEQ 383

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 369 DYQKLKREFDAYLTLYEALVKKQNESDLMQDLSnTSNIILVETAEENSSPVKPKRKLMLVLAVLGSFMVSVLIVFIEVML 448
Cdd:TIGR01005 384 DLRELEQDAAADKELYESLLGDMEQAKLQKAFK-IAKARLIDEAAVPEEPSKPKKLMTLALAAVLGMMLGGAAAAFLEAL 462

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 449 GDKVIQFRRMALKFKTKVIGTVP--KIKMKKSLKndvLTHLDR-------------------------AKHAGFIEAIRS 501
Cdd:TIGR01005 463 EGGFRDEGDIEEHLGHRSLATVPllDTQMDKKAQ---LTHAHFgsvkrhdeavddtmpfqllarivpdAPRSTFAEAFRN 539

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 502 IRTNILLDKVRSKQKVIAITSINPNDGKSSLSIQLADCFSEL-EDVVLIDADLRFPSIAKALGEDKdRPGLTNLIAKSHT 580
Cdd:TIGR01005 540 AKLACDFALADAENNLIAIAGALPDEGKSFIAANFAALIAAGgKRTLLIDADIRKGGLHQMFGKAP-KPGLLDLLAGEAS 618

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 581 LEQSIIKQEQYKFDVIASGNV---PKNPLVFLSNPRLQGIITYLKSHYERVILECPPIMSVSDAYVISKHVDSVYLVVDA 657
Cdd:TIGR01005 619 IEAGIHRDQRPGLAFIAAGGAshfPHNPNELLANPAMAELIDNARNAFDLVLVDLAALAAVADAAAFAALADGILFVTEF 698

                         730       740       750       760
                  ....*....|....*....|....*....|....*....|....
gi 2052573655 658 EKTDTNMLGNVLEELQQANVIVGGILINKVkESNNYYSTKYYSR 701
Cdd:TIGR01005 699 ERSPLGEIRDLIHQEPHANSDVLGVIFNAL-DMNELGKYGDFDG 741
Mrp COG0489
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ...
 493-694 4.66e-43

Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440255 [Multi-domain]  Cd Length: 289  Bit Score: 157.27  E-value: 4.66e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 493 AGFIEAIRSIRTNILLDKVRSKQKVIAITSINPNDGKSSLSIQLADCFSEL-EDVVLIDADLRFPSIAKALGEDkDRPGL 571
Cdd:COG0489    70 LLLLLLALALLLLLLLLLLRLLLEVIAVTSGKGGEGKSTVAANLALALAQSgKRVLLIDADLRGPSLHRMLGLE-NRPGL 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 572 TNLIAKSHTLEQSIIKQEQYKFDVIASGNVPKNPLVFLSNPRLQGIITYLKSHYERVILECPPIMSVSDAYVISKHVDSV 651
Cdd:COG0489   149 SDVLAGEASLEDVIQPTEVEGLDVLPAGPLPPNPSELLASKRLKQLLEELRGRYDYVIIDTPPGLGVADATLLASLVDGV 228

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2052573655 652 YLVVDAEKTDTNMLGNVLEELQQANVIVGGILINKVKESNNYY 694
Cdd:COG0489   229 LLVVRPGKTALDDVRKALEMLEKAGVPVLGVVLNMVCPKGERY 271
PRK11519 PRK11519
tyrosine-protein kinase Wzc;
11-700 8.81e-38

tyrosine-protein kinase Wzc;


Pssm-ID: 183173 [Multi-domain]  Cd Length: 719  Bit Score: 150.30  E-value: 8.81e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  11 DEIDLGELTKVLWHRKWFILIFVILTSLLASIFISQVPNVYQSSVLIMFKKATQSAdPLQSLISGSITAADNTETELELI 90
Cdd:PRK11519   16 DEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSGNS-LVQDIGSALANKPPASDAEIQLI 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  91 KSRRFAGEIVDSLALD--------------------KQPE-------------------FDIIFPENTSMTIDD------ 125
Cdd:PRK11519   95 RSRLVLGKTVDDLDLDiavskntfpifgagwdrlmgRQNEtvkvttfnrpkemadqvftLNVLDDKNYQLSSDGgfsarg 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 126 ---------------------------FNKLRRKTTIDNVLSNISVQQK-SGTDLISISYQSTNPKLAAQIANEVGSTFV 177
Cdd:PRK11519  175 qvgqmlkkdgvtlmveaiharpgteftVTKYSTLGMINNLQNNLTVTENgKDTGVLSLTYTGEDREQIRDILNSITRNYL 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 178 tfkEQLMAGKQKAGSK---LIVDKIKSVQQSLDKAEFKIVEYQNEHDFIDIQTAiafsntklvkmhaQKQVLDSEIeqsn 254
Cdd:PRK11519  255 ---EQNIERKSEEASKslaFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLE-------------AKAVLDSMV---- 314

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 255 ilkshiiksknNVDALLaipmlaksdivnsgkDEIKAQQKIFDKIklrYGKKHPKY---IEANRLLNDAKSnllsEITKQ 331
Cdd:PRK11519  315 -----------NIDAQL---------------NELTFKEAEISKL---YTKEHPAYrtlLEKRKALEDEKA----KLNGR 361

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 332 VNQIDKQLQfyqdnlvfvekEIeentirlrqlgviefdyQKLKREFDAYLTLYEALVKKQNESDLMQdLSNTSNIILVET 411
Cdd:PRK11519  362 VTAMPKTQQ-----------EI-----------------VRLTRDVESGQQVYMQLLNKQQELKITE-ASTVGDVRIVDP 412

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 412 AEENSSPVKPKRKLMLVLAVLGSFMVSVLIVFIEVMLgDKVIQFRRMALKFKTKVIGTVP------------KIKMKKSL 479
Cdd:PRK11519  413 AITQPGVLKPKKALIILGAIILGLMLSIVGVLLRSLF-NRGIESPQVLEEHGISVYASIPlsewqkardsvkTIKGIKRY 491

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 480 KNDVLTHL----DRAkhagfIEAIRSIRTNILLDKVRSKQKVIAITSINPNDGKSSLSIQLADCFSEL-EDVVLIDADLR 554
Cdd:PRK11519  492 KQSQLLAVgnptDLA-----IEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTnKRVLLIDCDMR 566

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 555 FPSIAKALGEDKDRpGLTNLIAKSHTLEQSIIKQEQYKFDVIASGNVPKNPLVFLSNPRLQGIITYLKSHYERVILECPP 634
Cdd:PRK11519  567 KGYTHELLGTNNVN-GLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPP 645

                         730       740       750       760       770       780       790
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 635 IMSVSDAYVISKHVDSVYLVVDAEktdTNMLGNV---LEELQQANVIVGGILINKV-KESNNYYSTKYYS 700
Cdd:PRK11519  646 ILAVTDAAIVGRHVGTTLMVARYA---VNTLKEVetsLSRFEQNGIPVKGVILNSIfRRASAYQDYGYYE 712
PRK09841 PRK09841
tyrosine-protein kinase;
9-698 4.16e-37

tyrosine-protein kinase;


Pssm-ID: 182106 [Multi-domain]  Cd Length: 726  Bit Score: 148.52  E-value: 4.16e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655   9 KDDEIDLGELTKVLWHRKWFILIFVILTSLLASIFISQVPNVYQSSVLIMFKkATQSADPLQSLISGSITAADNTETELE 88
Cdd:PRK09841   14 QENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVE-QKQGNAILSGLSDMIPNSSPESAPEIQ 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  89 LIKSRRFAGEIVDSLALDkqpefDIIFPENTSMTIDDFNKLRRKTTIDNVLSNISVQQKSGTD--LISISYQSTNPKLAA 166
Cdd:PRK09841   93 LLQSRMILGKTIAELNLR-----DIVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDqqLTLTVGENGHYTLEG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 167 QianevgstfvTFKEQLMAGK--QKAGSKLIVDKIKS-------VQQSLD-------KAEFKIVEYQNEHDFIDIqtAIA 230
Cdd:PRK09841  168 E----------EFTVNGMVGQrlEKDGVALTIADIKAkpgtqfvLSQRTEleainalQETFTVSERSKESGMLEL--TMT 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 231 FSNTKLVKmhaqkQVLDSEIE---QSNILKSHIIKSKNNVDALLAIPMLAKSdiVNSGKDEIKAQQKIFDKIKLRygkkh 307
Cdd:PRK09841  236 GDDPQLIT-----RILNSIANnylQQNIARQAAQDSQSLEFLQRQLPEVRSE--LDQAEEKLNVYRQQRDSVDLN----- 303

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 308 pkyIEANRLLNDAKS--NLLSEIT---KQVNQIDKQLQFYQDNLVFVEKEIEENTIRLRQ----LGVIEFDYQKLKREFD 378
Cdd:PRK09841  304 ---LEAKAVLEQIVNvdNQLNELTfreAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKrvsaMPSTQQEVLRLSRDVE 380

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 379 AYLTLYEALVKKQNESDLMQDlSNTSNIILVETAEENSSPVKPKRKLMLVLAVLGSFMVSVLIVFIEVMLgDKVIQFRRM 458
Cdd:PRK09841  381 AGRAVYLQLLNRQQELSISKS-SAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAML-RRGVEAPEQ 458

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 459 ALKFKTKVIGTVP-------KIKMKKS----------LKNDVLTHLDRAKHAgFIEAIRSIRTNILLDKVRSKQKVIAIT 521
Cdd:PRK09841  459 LEEHGISVYATIPmsewldkRTRLRKKnlfsnqqrhrTKNIPFLAVDNPADS-AVEAVRALRTSLHFAMMETENNILMIT 537

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 522 SINPNDGKSSLSIQLADCFSELEDVVL-IDADLRfPSIAKALGEDKDRPGLTNLIAKSHTLEQSIIKQEQYKFDVIASGN 600
Cdd:PRK09841  538 GATPDSGKTFVSSTLAAVIAQSDQKVLfIDADLR-RGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQ 616

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 601 VPKNPLVFLSNPRLQGIITYLKSHYERVILECPPIMSVSDAYVISKHVDSVYLVVDAEKTDTNMLGNVLEELQQANV-IV 679
Cdd:PRK09841  617 VPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVnIK 696

                         730
                  ....*....|....*....
gi 2052573655 680 GGILINKVKESNNYYSTKY 698
Cdd:PRK09841  697 GAILNGVIKRASTAYSYGY 715
eps_fam TIGR01007
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ...
 497-699 3.15e-34

capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273392 [Multi-domain]  Cd Length: 204  Bit Score: 129.48  E-value: 3.15e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 497 EAIRSIRTNILLDKvrSKQKVIAITSINPNDGKSSLSIQLADCFSEL-EDVVLIDADLRFPSIAKALGEDKDRPGLTNLI 575
Cdd:TIGR01007   1 EYYNAIRTNIQFSG--AEIKVLLITSVKPGEGKSTTSANIAIAFAQAgYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 576 AKSHTLEQSIIKQEQYKFDVIASGNVPKNPLVFLSNPRLQGIITYLKSHYERVILECPPIMSVSDAYVISKHVDSVYLVV 655
Cdd:TIGR01007  79 SGTTDLSDAICDTNIENLDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASILVT 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2052573655 656 DAEKTDTNMLGNVLEELQQANVIVGGILINKVKESNNYYSTKYY 699
Cdd:TIGR01007 159 DAGKIKKREVKKAKEQLEQAGSNFLGVVLNKVDISVSKYGYYGY 202
pepcterm_ChnLen TIGR03007
polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; Members of this ...
 20-473 2.41e-29

polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 274386 [Multi-domain]  Cd Length: 498  Bit Score: 122.47  E-value: 2.41e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  20 KVLWHRKWFILIFVILTSLLASIFISQVPNVYQSSVLIMFKkaTQSAdpLQSLISGsITAADNTETELELIK----SRRF 95
Cdd:TIGR03007   8 KGIWRRRWLFVAVAWVVMIVGWGVVYFLPDRYEASARVYVD--TQSV--LRPLLKG-IAVTPNVDQKIRIMSrtllSRPN 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  96 AGEIVDSLALD---KQPEfdiifpentsmtidDFNKLrrkttIDNVLSNISVQQKSGTDLISISYQSTNPKLAAQIANEV 172
Cdd:TIGR03007  83 LEKVIRMLDLDlgaKSPA--------------QLEAL-----ITKLRKNISISLAGRDNLFTISYEDKDPELAKDVVQTL 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 173 GSTFVtfkEQLMAGKQKAGS---KLIVDKIKSVQQSLDKAEFKIVEYQNEH-DFIDIQTAIAFSNTKlvkmHAQKQVLDS 248
Cdd:TIGR03007 144 LTIFV---EETLGSKRQDSDsaqRFIDEQIKTYEKKLEAAENRLKAFKQENgGILPDQEGDYYSEIS----EAQEELEAA 216

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 249 EIE------QSNILKSHIIKSKNNVDALLAIPMLAKSdivnsgkDEIKAQQKIFDKIKLRYGKKHPKYIEANRLL----- 317
Cdd:TIGR03007 217 RLElneaiaQRDALKRQLGGEEPVLLAGSSVANSELD-------GRIEALEKQLDALRLRYTDKHPDVIATKREIaqlee 289

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 318 -------NDAKSNLLSEI--------TKQVNQIDKQLQFYQDNLVFVEKEIEENTIRLRQLGVIEFDYQKLKREFDAYLT 382
Cdd:TIGR03007 290 qkeeegsAKNGGPERGEIanpvyqqlQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKS 369

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 383 LYEALVKKQNESDLMQDLSNTSNII---LVETAEENSSPVKPKRKLMLVLAVLGSFMVSVLIVFIEVMLGDKVIQFRRMA 459
Cdd:TIGR03007 370 NYEQLLTRRESAEVSKQMEVQDKAVsfrIIDPPIVPSKPSGPNRPLLMLAGLLGGLGAGIGLAFLLSQLRPTVRSVRDLR 449

                         490
                  ....*....|....
gi 2052573655 460 LKFKTKVIGTVPKI 473
Cdd:TIGR03007 450 ELTGLPVLGVIPMI 463
YveK COG3944
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
12-184 1.01e-21

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 96.29  E-value: 1.01e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  12 EIDLGELTKVLWHRKWFILIFVILTSLLASIFISQVPNVYQSSVLIMFkkATQSADPLQSLISGSITAADNTETELELIK 91
Cdd:COG3944     1 EMDLREYLRILRRRWWLILLLTLLGALAALASSFLITPVYQASTTLLV--STSSGSDASDLYQGIQTAQQLVNTYAELLK 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  92 SRRFAGEIVDSLALDkqpefdiifpentsmtiddfnklrrkTTIDNVLSNISVQQKSGTDLISISYQSTNPKLAAQIANE 171
Cdd:COG3944    79 SPAVLEEVIDELGLD--------------------------LSPEELAKKISVTSPPDTQVITITVTDTDPERAADIANA 132

                         170
                  ....*....|...
gi 2052573655 172 VGSTFVTFKEQLM 184
Cdd:COG3944   133 VAEVFAEEVKELM 145
CpaE COG4963
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ...
 482-658 1.50e-11

Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443989 [Multi-domain]  Cd Length: 358  Bit Score: 66.68  E-value: 1.50e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 482 DVLTHLDRAKHAGFIEAIRSIRTNILLDKVRSKqKVIAITSINPNDGKSSLSIQLADCFSEL--EDVVLIDADLRFPSIA 559
Cdd:COG4963    70 ESAALLADVLPLSPDELRAALARLLDPGAARRG-RVIAVVGAKGGVGATTLAVNLAWALAREsgRRVLLVDLDLQFGDVA 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 560 KALGEDkDRPGLTNLIAKSHTLEQSIIKQ----EQYKFDVIASGNVPkNPLVFLSNPRLQGIITYLKSHYERVILECPPI 635
Cdd:COG4963   149 LYLDLE-PRRGLADALRNPDRLDETLLDRaltrHSSGLSVLAAPADL-ERAEEVSPEAVERLLDLLRRHFDYVVVDLPRG 226

                         170       180
                  ....*....|....*....|...
gi 2052573655 636 MSVSDAYVISkHVDSVYLVVDAE 658
Cdd:COG4963   227 LNPWTLAALE-AADEVVLVTEPD 248
CbiA pfam01656
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ...
 518-693 6.90e-11

CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.


Pssm-ID: 426369 [Multi-domain]  Cd Length: 228  Bit Score: 62.75  E-value: 6.90e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 518 IAITSINPNDGKSSLSIQLADCFSELE-DVVLIDADLRFPSIAKALGEDKDRPGLTNL---IAKSHTLEQSIIK--QEQY 591
Cdd:pfam01656   1 IAIAGTKGGVGKTTLAANLARALARRGlRVLLIDLDPQSNNSSVEGLEGDIAPALQALaegLKGRVNLDPILLKekSDEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 592 KFDVIASGNV----PKNPLVFLSNPRLQGIITYLKSHYERVILECPP------IMSVSDAYVISKHVD-SVYLVVDAEKT 660
Cdd:pfam01656  81 GLDLIPGNIDlekfEKELLGPRKEERLREALEALKEDYDYVIIDGAPglgellRNALIAADYVIIPLEpEVILVEDAKRL 160

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2052573655 661 dTNMLGNVLEELQQANVIVGGILINKVKESNNY 693
Cdd:pfam01656 161 -GGVIAALVGGYALLGLKIIGVVLNKVDGDNHG 192
Wzz pfam02706
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide ...
 11-101 1.93e-10

Chain length determinant protein; This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.


Pssm-ID: 460658 [Multi-domain]  Cd Length: 90  Bit Score: 57.68  E-value: 1.93e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  11 DEIDLGELTKVLWHRKWFILIFVILTSLLASIFISQVPNVYQSSVLIMF--KKATQSADPLQSLISGSitaaDNTETELE 88
Cdd:pfam02706   1 DEIDLIELLGVLWKRKKLIILVTLLFTLLAAAYAFLATPKYTATAQILVpqKKGEAGSLLGSDLQAGL----QLASTEIE 76

                          90
                  ....*....|...
gi 2052573655  89 LIKSRRFAGEIVD 101
Cdd:pfam02706  77 ILKSRDVLEKVID 89
FlhG COG0455
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ...
 531-691 9.85e-10

MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440223 [Multi-domain]  Cd Length: 230  Bit Score: 59.52  E-value: 9.85e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 531 SLSIQLADCFSEL-EDVVLIDADLRFPSIAKALGEDkDRPGLTNLIAKSHTLEQsIIKQEQYKFDVIASGNVPKNPLVFL 609
Cdd:COG0455     1 TVAVNLAAALARLgKRVLLVDADLGLANLDVLLGLE-PKATLADVLAGEADLED-AIVQGPGGLDVLPGGSGPAELAELD 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 610 SNPRLQGIITYLKSHYERVILECPPIMSvSDAYVISKHVDSVYLVVDAEKT---DTNMLGNVLEELQQANVIvgGILINK 686
Cdd:COG0455    79 PEERLIRVLEELERFYDVVLVDTGAGIS-DSVLLFLAAADEVVVVTTPEPTsitDAYALLKLLRRRLGVRRA--GVVVNR 155


                  ....*
gi 2052573655 687 VKESN 691
Cdd:COG0455   156 VRSEA 160
KpsE COG3524
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
22-252 1.25e-09

Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442746 [Multi-domain]  Cd Length: 370  Bit Score: 60.63  E-value: 1.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  22 LWHRKWFILIFVILTSLLASIFISQV-PNVYQSSVLIMFKKA--TQSADPLQSLISGSITAADNTETEL--ELIKSRRFA 96
Cdd:COG3524     9 RKLLLLLFLLFVLLPTLLAALYYGLIaSDQYVSEARFVVRSAegQSGSDGLGGLLGGTGFSSSSQDSYIvqDYLRSRDAV 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  97 GEIVDSLALDK---QPEFDIIFPENTSMTIDDFNKLRRKttidnvlsNISVQQKSGTDLISISYQSTNPKLAAQIANEV- 172
Cdd:COG3524    89 ERLDAELDLRAhysRPGIDPLSRLDPDASIEDLYKYYRR--------RVKVEYDSTSGIITLEVRAFDPEDAQAIAEALl 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 173 --GSTFVTfkeQLMAGKQKagsklivDKIKSVQQSLDKAEFK-------IVEYQNEHDFIDIQTAIAFSNTKLVKMHAQK 243
Cdd:COG3524   161 aeSEELVN---QLSERARE-------DAVRFAEEEVERAEERlrdareaLLAFRNRNGILDPEATAEALLQLIATLEGQL 230


                  ....*....
gi 2052573655 244 QVLDSEIEQ 252
Cdd:COG3524   231 AELEAELAA 239
YveK COG3944
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
394-565 4.26e-09

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 58.54  E-value: 4.26e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 394 SDLMQDLSNTSNIILVETAEENSSPVKPKRKLMLVLAVLGSFMVSVLIVFIEVMLGDKViqfrrmalkfKT-----KVIG 468
Cdd:COG3944   138 AEEVKELMKVDNVTVLDPATVPASPVSPNPKLNLAIGLVLGLLLGVGLAFLRELLDTTI----------RSeedieRLLG 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 469 TVPKI-KMKKSLKNDVLTHLDRAKHAGFIEAIRSIRTNILLDKVRSKQKVIAITSINPNDGKSSLSIQLADCFSELEDVV 547
Cdd:COG3944   208 LLLGGaVPAARSARPLLLLLADASPRAAAARRRRRNLLFALAAVDARTVVVVSSSLSEGKSTTTAALALALAAAAAGVVL 287

                         170
                  ....*....|....*...
gi 2052573655 548 LIDADLRFPSIAKALGED 565
Cdd:COG3944   288 VLADLDRRRRVALLGLLE 305
WzzB COG3765
LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope ...
 5-448 2.28e-08

LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442979 [Multi-domain]  Cd Length: 364  Bit Score: 56.52  E-value: 2.28e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655   5 NENYKDDEIDLGELTKVLWHRKWFILIFVILTSLLASIFISQVPNVYQSSVLIMfkKATQSAdpLQSLISGS--ITAADN 82
Cdd:COG3765    14 YPPSQDDEIDLFELLRTLWQGKLWIIGITLLFALLALVYAFLLPQKWTSTAIVD--PPTVNE--LGGYYSQRqfLRNLDV 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655  83 TETELELIKSRRFaGEIVDSLA--------LDKQPEFdiifpentsMTIDDFNKLRRKTTIDNVLSNISVQ------QKS 148
Cdd:COG3765    90 KSVDPPVISSELF-NEFIKQLSsydlrrefLLQSDYY---------KQLQEGDEKEDAALLDELINNISITppddkkKSS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 149 GTDLISISYQSTNPKLAAQIANEvgstFVTFKEQLMAGKQKAGSKLIVD-KIKSVQQSLDKAEFKI-VEYQNEHDFIDIQ 226
Cdd:COG3765   160 PYTNYSVSFTAETPEDAQQLLRG----YIDFANQRVLKELNEELQGAIAaRLQSLKAQIKRLEEVAkAQRQRRIERLKYA 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 227 TAIAfsntklvkmhaqkqvldseiEQSNILKSHIIKSKNNVDALLAIPMLAK-SDIVNSGKDEIKAQQKIFDKIklrygk 305
Cdd:COG3765   236 LKIA--------------------QAAGIKKPVYSNGQTPAVKLDPSYLFLLgTDALQAELEILKARGDDYPLN------ 289

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 306 khPKYieanrllndaksnllseitkqvnqidKQLQFYQDNLvfvekeieeNTIRLRQLGVIEFDYQKlkrefdayltlye 385
Cdd:COG3765   290 --ADL--------------------------YQLQAQLAQL---------NALPIDDVGFQPFRYLR------------- 319

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2052573655 386 alvkkqnesdlmqdlsntsniilveTAEENSSPVKPKRKLMLVLAVLGSFMVSVLIVFIEVML 448
Cdd:COG3765   320 -------------------------TPEEPVKKDKPKRALILVLGALLGGMLGVGVVLIRHAL 357
ParA COG1192
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ...
 528-692 1.52e-07

ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440805 [Multi-domain]  Cd Length: 253  Bit Score: 53.32  E-value: 1.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 528 GKSSLSIQLADCFSELE-DVVLIDADlrfP--SIAKALG--EDKDRPGLTNLIAKSHTLEQSIIKQEQYKFDVIAS---- 598
Cdd:COG1192    14 GKTTTAVNLAAALARRGkRVLLIDLD---PqgNLTSGLGldPDDLDPTLYDLLLDDAPLEDAIVPTEIPGLDLIPAnidl 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 599 -------GNVPKNPLvflsnpRLQGIITYLKSHYERVILECPP---IMSVSdAYVISkhvDSVYLVVDAEKTD---TNML 665
Cdd:COG1192    91 agaeielVSRPGREL------RLKRALAPLADDYDYILIDCPPslgLLTLN-ALAAA---DSVLIPVQPEYLSlegLAQL 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 2052573655 666 GNVLEELQQA---NVIVGGILINKVKESNN 692
Cdd:COG1192   161 LETIEEVREDlnpKLEILGILLTMVDPRTR 190
GNVR pfam13807
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ...
 373-447 2.40e-07

G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.


Pssm-ID: 433492 [Multi-domain]  Cd Length: 82  Bit Score: 48.75  E-value: 2.40e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2052573655 373 LKREFDAYLTLYEALVKKQNESDLMQDlSNTSNIILVETAEENSSPVKPKRKLMLVLAVLGSFMVSVLIVFIEVM 447
Cdd:pfam13807   9 LTRDVEVNTEIYTQLLNSNQELEVVKA-GTVGNVRIVDTAVVPPKPVKPKKALIVVLALLLGLMLGVGLVLLRRA 82
CpaE-like cd03111
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE ...
 516-708 2.40e-06

pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.


Pssm-ID: 349765 [Multi-domain]  Cd Length: 235  Bit Score: 49.20  E-value: 2.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 516 KVIAITSINPNDGKSSLSIQLADCFSEL--EDVVLIDADLRFPSIAKALGEDKDRpGLTNLIAKSH----TLEQSIIKQE 589
Cdd:cd03111     1 RVVAVVGAKGGVGASTLAVNLAQELAQRakDKVLLIDLDLPFGDLGLYLNLRPDY-DLADVIQNLDrldrTLLDSAVTRH 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 590 QYKFDVIAsGNVPKNPLVFLSNPRLQGIITYLKSHYERVILECPPIMSVSDAYVISkHVDSVYLVVDAEKTDTNMLGNVL 669
Cdd:cd03111    80 SSGLSLLP-APQELEDLEALGAEQVDKLLQVLRAFYDHIIVDLGHFLDEVTLAVLE-AADEILLVTQQDLPSLRNARRLL 157

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2052573655 670 EELQQAnvivgGILINKVKESNNyystKYYSRQNIEPSK 708
Cdd:cd03111   158 DSLREL-----EGSSDRLRLVLN----RYDKKSEISPKD 187
FlhG-like cd02038
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ...
 516-672 3.74e-04

MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.


Pssm-ID: 349758 [Multi-domain]  Cd Length: 230  Bit Score: 42.56  E-value: 3.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 516 KVIAITSINPNDGKSSLSIQLADCFSEL-EDVVLIDADLRFPSIAKALGEdKDRPGLTNLIAKSHTLEQSIIKQEqYKFD 594
Cdd:cd02038     1 RIIAVTSGKGGVGKTNVSANLALALSKLgKRVLLLDADLGLANLDILLGL-APKKTLGDVLKGRVSLEDIIVEGP-EGLD 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 595 VIASG-------NVPKNPLVFLSNpRLQGI-------------------ITYLKSHYERVILECPPIMSVSDAY----VI 644
Cdd:cd02038    79 IIPGGsgmeelaNLDPEQKAKLIE-ELSSLesnydyllidtgagisrnvLDFLLAADEVIVVTTPEPTSITDAYalikVL 157

                         170       180       190
                  ....*....|....*....|....*....|
gi 2052573655 645 SKH--VDSVYLVVdaektdtNMLGNVLEEL 672
Cdd:cd02038   158 SRRggKKNFRLIV-------NMARSPKEGR 180
MinD cd02036
septum site-determining protein MinD; Septum site-determining protein MinD is part of the ...
 516-688 3.45e-03

septum site-determining protein MinD; Septum site-determining protein MinD is part of the operon MinCDE that determines the site of the formation of a septum at mid-cell, an important part of bacterial cell division. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein.


Pssm-ID: 349756 [Multi-domain]  Cd Length: 236  Bit Score: 39.88  E-value: 3.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 516 KVIAITSINPNDGKSSLSIQLADCFSEL-EDVVLIDADLRFPSIAKALG-EDKDRPGLTNLIAKSHTLEQSIIKQEQYKF 593
Cdd:cd02036     1 RVIVITSGKGGVGKTTTTANLGVALAKLgKKVLLIDADIGLRNLDLILGlENRIVYTLVDVLEGECRLEQALIKDKRWEN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052573655 594 DVIASGNVPKNPLVfLSNPRLQGIITYLKSHYERVILECPP------IMSVSDAyviskhvDSVYLVVDAEKT---DTNM 664
Cdd:cd02036    81 LYLLPASQTRDKDA-LTPEKLEELVKELKDSFDFILIDSPAgiesgfINAIAPA-------DEAIIVTNPEISsvrDADR 152

                         170       180
                  ....*....|....*....|....
gi 2052573655 665 LGNVLEELQQANVivgGILINKVK 688
Cdd:cd02036   153 VIGLLESKGIVNI---GLIVNRYR 173
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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