|
Name |
Accession |
Description |
Interval |
E-value |
| Hia |
COG5295 |
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, ... |
64-752 |
2.62e-20 |
|
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444098 [Multi-domain] Cd Length: 785 Bit Score: 96.76 E-value: 2.62e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 64 SGATSANDQVIVGNHNNLNNTMSSEIIGNYNTVNNSDIVVRGESNTVSNAYGQVSGDSNKIDAANGTTTVIGSSNNVTGQ 143
Cdd:COG5295 2 ASNAGAVAAGTALTTVASGASTTASGSSATVTSAAQSTGSAATSSGSSSAAGGSGSTSSLTAAAATAGAGSGGTSATAAS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 144 SNTAVGNGN----TMTGRGSVAIGESTTTTASNSVTLGTGSSNNRDNTVSVGSAGAERQITNVANGSTRTDASNVGQMQD 219
Cdd:COG5295 82 SVASGGASAataaSTGTGNTAGTAATVAGAASSGSATNAGASAGASAAAAAGSTAAAGGAAASTGGSSAAGGSNTATATG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 220 GDAATLAAAKGYTDTKVAAEAKARADADAAEAKARADGDAATLAASKDYTGQRVDAEAKARADADAAEAKARADGDAATL 299
Cdd:COG5295 162 SSTANAATAAAGATSTSASGSSSGASGAAAASAATGASAGGTASAAASASSSATGTSASVGVNAGAATGSAASAGGSASA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 300 AASKDYTGQRVDAEAKARADADAAEAKARADGDAATLAASKDYTGQRVDAEAKARADADAAEAKARADGDAATLAASKDH 379
Cdd:COG5295 242 GAASGNATTASASSVSGSAVAAGTASTATTASTTAASGAAGTATAAAGGDAAAAGSASSTGAANATAGGGNAGSGGGGAA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 380 TNQRVDAEAQARADGDAATLASAKDHTNSRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTN 459
Cdd:COG5295 322 ALGSAGGSSGVGTASGASAAAATNDGTANGAGTSAAADATSGGGAGGGGAAATSSSGGSATAAGNAAGAAGAGSAGSGGS 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 460 QRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQR 539
Cdd:COG5295 402 STGASAGGGASAAGGAAAGSAAAGTSSNTSAVGASNGASGTSSSASSAGAAGGGTAGAGGAANVGAATTAASAAATAAAA 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 540 VDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVD 619
Cdd:COG5295 482 TSSAAIAGATATGAGAAAGGAGAGAAGGAGSAAAGGAANAAAASGATATAGSAGGGAAAAAGGGSTTAATGTNSVAVGNN 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 620 AEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKS---HTEDYSVARGVEA---GDGSVAVGKGSSATAA 693
Cdd:COG5295 562 TATGANSVALGAGSVASGANSVSVGAAGAENVAAGATDTDAVNGGgavATGDNSVAVGNNAqasGANSVALGAGATATAN 641
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 2084252795 694 GSVALGAGSVADRANTVSVGAAGGERQITNVRAGTAATDAVNLSQMQAADLQTLNSANQ 752
Cdd:COG5295 642 NSVALGAGSVADRANTVSVGSAGAERQITNVAAGTADTDAVNVSQLKAVNSSTDQRFNQ 700
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
374-665 |
2.41e-09 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 61.08 E-value: 2.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 374 AASKDHTNQRVDAEAQARADGDAATLASAKDHTNSRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLAS 453
Cdd:NF033609 578 SGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSD 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 454 AKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAK 533
Cdd:NF033609 658 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 737
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 534 DHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDH 613
Cdd:NF033609 738 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 817
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2084252795 614 TNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKSH 665
Cdd:NF033609 818 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSN 869
|
|
| LbR_YadA-like |
cd12820 |
YadA-like, left-handed beta-roll; This group contains the collagen-binding domain virulence ... |
71-192 |
1.44e-07 |
|
YadA-like, left-handed beta-roll; This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.
Pssm-ID: 240612 [Multi-domain] Cd Length: 126 Bit Score: 50.96 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 71 DQVIVGNHNNLNNTMSSEIiGNYNTVNNSDIVVRGESNTVSNAYGQVSGDSNKIDAANGTttVIGSSNNVTGQSNTAVGN 150
Cdd:cd12820 1 NSTAIGYNNKASGENSTAF-GYNNKASGDNSSAFGYGNKASGENSSAFGYNNKASGENST--AFGYGNKASGENSSAFGS 77
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2084252795 151 GNTMTGRGSVAIGESTTTTASNSVTLGTGSSNNRDNTVSVGS 192
Cdd:cd12820 78 NNTASGNNSSAFGYNNTASGENSTAFGNNSKASGENSTALGN 119
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
435-663 |
5.97e-07 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 53.41 E-value: 5.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 435 RVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADgDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRV 514
Cdd:PRK05035 472 RHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVI-KAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAV 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 515 DAeAQARADGDAATLASAKDHTNQRVD------AEAQARADGDAATLASAKDhTNQRVDAEAQARADGDAATLASAKdht 588
Cdd:PRK05035 551 AA-AIARAKAKKAAQQAANAEAEEEVDpkkaavAAAIARAKAKKAAQQAASA-EPEEQVAEVDPKKAAVAAAIARAK--- 625
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2084252795 589 nqrvdaeAQARADGDAATLASAKDHTNQRVDAeAQARADGDAATLASAKDHTNQRVDAEAQAradgDAATLASAK 663
Cdd:PRK05035 626 -------AKKAEQQANAEPEEPVDPRKAAVAA-AIARAKARKAAQQQANAEPEEAEDPKKAA----VAAAIARAK 688
|
|
| ser_rich_anae_1 |
NF033849 |
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 ... |
28-218 |
8.31e-05 |
|
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 amino acids), which a highly serine-rich central region that averages over 300 aa in length. Species encoding members of this family of proteins tend to be anaerobic bacteria, including Gram-positive bacteria of the human gut microbiome and Chloroflexi from marine sediments.
Pssm-ID: 468206 [Multi-domain] Cd Length: 1122 Bit Score: 46.54 E-value: 8.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 28 TATGVAHAANTVDSRFTNTIVTGDGNSVTGNRDTHFSGATSANDQVIVGNHNNLNNTMSSEIIGNYNTVNNSDIVVRGES 107
Cdd:NF033849 301 SSVGTSESQSHGTTEGTSTTDSSSHSQSSSYNVSSGTGVSSSHSDGTSQSTSISHSESSSESTGTSVGHSTSSSVSSSES 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 108 NTVSNAYGQVSGDSNKIDAANGTTTVIGSSNNVTGQSNTAVGNGNTMTGRGSvaigeSTTTTASNSVTLGTGSSNNRDNT 187
Cdd:NF033849 381 SSRSSSSGVSGGFSGGIAGGGVTSEGLGASQGGSEGWGSGDSVQSVSQSYGS-----SSSTGTSSGHSDSSSHSTSSGQA 455
|
170 180 190
....*....|....*....|....*....|.
gi 2084252795 188 VSVGSAGAERQITNVANGSTRTDASNVGQMQ 218
Cdd:NF033849 456 DSVSQGTSWSEGTGTSQGQSVGTSESWSTSQ 486
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
432-662 |
9.88e-04 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 42.53 E-value: 9.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 432 TNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADgdaatlASAKDHTNQRVDAEAQARADGDAATLASAKdhtn 511
Cdd:TIGR02794 48 VAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAE------QARQKELEQRAAAEKAAKQAEQAAKQAEEK---- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 512 QRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAK---DHTNQRVDAEAQARADGDAatlaSAKDHT 588
Cdd:TIGR02794 118 QKQAEEAKAKQAAEAKAKAEAEAERKAKEEAAKQAEEEAKAKAAAEAKkkaEEAKKKAEAEAKAKAEAEA----KAKAEE 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2084252795 589 NQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASA 662
Cdd:TIGR02794 194 AKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADEAELGDIFGLASGSNAEKQGGARGAAAGSEVDKYAAI 267
|
|
| YadA_stalk |
pfam05662 |
Coiled stalk of trimeric autotransporter adhesin; This short motif is found in invasins and ... |
720-756 |
1.07e-03 |
|
Coiled stalk of trimeric autotransporter adhesin; This short motif is found in invasins and haemagglutinins, normally associated with (pfam05658).
Pssm-ID: 428572 [Multi-domain] Cd Length: 43 Bit Score: 37.55 E-value: 1.07e-03
10 20 30
....*....|....*....|....*....|....*..
gi 2084252795 720 QITNVRAGTAATDAVNLSQMQAADLQTLNSANQYTDS 756
Cdd:pfam05662 1 KITNVAAGTVSTDAVNGSQLYAVNQSVSNGANNVTSG 37
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Hia |
COG5295 |
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, ... |
64-752 |
2.62e-20 |
|
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444098 [Multi-domain] Cd Length: 785 Bit Score: 96.76 E-value: 2.62e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 64 SGATSANDQVIVGNHNNLNNTMSSEIIGNYNTVNNSDIVVRGESNTVSNAYGQVSGDSNKIDAANGTTTVIGSSNNVTGQ 143
Cdd:COG5295 2 ASNAGAVAAGTALTTVASGASTTASGSSATVTSAAQSTGSAATSSGSSSAAGGSGSTSSLTAAAATAGAGSGGTSATAAS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 144 SNTAVGNGN----TMTGRGSVAIGESTTTTASNSVTLGTGSSNNRDNTVSVGSAGAERQITNVANGSTRTDASNVGQMQD 219
Cdd:COG5295 82 SVASGGASAataaSTGTGNTAGTAATVAGAASSGSATNAGASAGASAAAAAGSTAAAGGAAASTGGSSAAGGSNTATATG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 220 GDAATLAAAKGYTDTKVAAEAKARADADAAEAKARADGDAATLAASKDYTGQRVDAEAKARADADAAEAKARADGDAATL 299
Cdd:COG5295 162 SSTANAATAAAGATSTSASGSSSGASGAAAASAATGASAGGTASAAASASSSATGTSASVGVNAGAATGSAASAGGSASA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 300 AASKDYTGQRVDAEAKARADADAAEAKARADGDAATLAASKDYTGQRVDAEAKARADADAAEAKARADGDAATLAASKDH 379
Cdd:COG5295 242 GAASGNATTASASSVSGSAVAAGTASTATTASTTAASGAAGTATAAAGGDAAAAGSASSTGAANATAGGGNAGSGGGGAA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 380 TNQRVDAEAQARADGDAATLASAKDHTNSRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTN 459
Cdd:COG5295 322 ALGSAGGSSGVGTASGASAAAATNDGTANGAGTSAAADATSGGGAGGGGAAATSSSGGSATAAGNAAGAAGAGSAGSGGS 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 460 QRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQR 539
Cdd:COG5295 402 STGASAGGGASAAGGAAAGSAAAGTSSNTSAVGASNGASGTSSSASSAGAAGGGTAGAGGAANVGAATTAASAAATAAAA 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 540 VDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVD 619
Cdd:COG5295 482 TSSAAIAGATATGAGAAAGGAGAGAAGGAGSAAAGGAANAAAASGATATAGSAGGGAAAAAGGGSTTAATGTNSVAVGNN 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 620 AEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKS---HTEDYSVARGVEA---GDGSVAVGKGSSATAA 693
Cdd:COG5295 562 TATGANSVALGAGSVASGANSVSVGAAGAENVAAGATDTDAVNGGgavATGDNSVAVGNNAqasGANSVALGAGATATAN 641
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 2084252795 694 GSVALGAGSVADRANTVSVGAAGGERQITNVRAGTAATDAVNLSQMQAADLQTLNSANQ 752
Cdd:COG5295 642 NSVALGAGSVADRANTVSVGSAGAERQITNVAAGTADTDAVNVSQLKAVNSSTDQRFNQ 700
|
|
| Hia |
COG5295 |
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, ... |
21-228 |
6.19e-13 |
|
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444098 [Multi-domain] Cd Length: 785 Bit Score: 72.88 E-value: 6.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 21 TGVALMVTATGVAHAANTVDSRFTNTIVTGDGNSVTGNRDTHFSGATSANDQVIVGNHNNLNNTMSSEIIGNYNTVNNSD 100
Cdd:COG5295 489 GATATGAGAAAGGAGAGAAGGAGSAAAGGAANAAAASGATATAGSAGGGAAAAAGGGSTTAATGTNSVAVGNNTATGANS 568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 101 IVVRGESNTVSNAYGQV--SGDSNKIDAANGTTTVIGSSNNVTGQSNTAVGNGNTMTGRGSVAIGESTTTTASNSVTLGT 178
Cdd:COG5295 569 VALGAGSVASGANSVSVgaAGAENVAAGATDTDAVNGGGAVATGDNSVAVGNNAQASGANSVALGAGATATANNSVALGA 648
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2084252795 179 GSSNNRDNTVSVGSAGAERQITNVANGSTRTDASNVGQMQDGDAATLAAA 228
Cdd:COG5295 649 GSVADRANTVSVGSAGAERQITNVAAGTADTDAVNVSQLKAVNSSTDQRF 698
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
374-665 |
2.41e-09 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 61.08 E-value: 2.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 374 AASKDHTNQRVDAEAQARADGDAATLASAKDHTNSRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLAS 453
Cdd:NF033609 578 SGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSD 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 454 AKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAK 533
Cdd:NF033609 658 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 737
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 534 DHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDH 613
Cdd:NF033609 738 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 817
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2084252795 614 TNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKSH 665
Cdd:NF033609 818 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSN 869
|
|
| LbR_YadA-like |
cd12820 |
YadA-like, left-handed beta-roll; This group contains the collagen-binding domain virulence ... |
71-192 |
1.44e-07 |
|
YadA-like, left-handed beta-roll; This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.
Pssm-ID: 240612 [Multi-domain] Cd Length: 126 Bit Score: 50.96 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 71 DQVIVGNHNNLNNTMSSEIiGNYNTVNNSDIVVRGESNTVSNAYGQVSGDSNKIDAANGTttVIGSSNNVTGQSNTAVGN 150
Cdd:cd12820 1 NSTAIGYNNKASGENSTAF-GYNNKASGDNSSAFGYGNKASGENSSAFGYNNKASGENST--AFGYGNKASGENSSAFGS 77
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2084252795 151 GNTMTGRGSVAIGESTTTTASNSVTLGTGSSNNRDNTVSVGS 192
Cdd:cd12820 78 NNTASGNNSSAFGYNNTASGENSTAFGNNSKASGENSTALGN 119
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
435-663 |
5.97e-07 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 53.41 E-value: 5.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 435 RVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADgDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRV 514
Cdd:PRK05035 472 RHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVI-KAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAV 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 515 DAeAQARADGDAATLASAKDHTNQRVD------AEAQARADGDAATLASAKDhTNQRVDAEAQARADGDAATLASAKdht 588
Cdd:PRK05035 551 AA-AIARAKAKKAAQQAANAEAEEEVDpkkaavAAAIARAKAKKAAQQAASA-EPEEQVAEVDPKKAAVAAAIARAK--- 625
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2084252795 589 nqrvdaeAQARADGDAATLASAKDHTNQRVDAeAQARADGDAATLASAKDHTNQRVDAEAQAradgDAATLASAK 663
Cdd:PRK05035 626 -------AKKAEQQANAEPEEPVDPRKAAVAA-AIARAKARKAAQQQANAEPEEAEDPKKAA----VAAAIARAK 688
|
|
| PRK07735 |
PRK07735 |
NADH-quinone oxidoreductase subunit C; |
413-677 |
1.78e-06 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 51.52 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 413 EAQARADGDAATLASAKdHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADgdAATLASAKDHTNQRVDAEA 492
Cdd:PRK07735 13 EAARRAKEEARKRLVAK-HGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAK--AAALAKQKREGTEEVTEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 493 QARADGDAATLASAKdhtnqrvdaeaqaradgdAATLASAKDHTNQRVDAE--AQARADGDAATLASAKDHTNQRVDAEA 570
Cdd:PRK07735 90 KAKAKAKAAAAAKAK------------------AAALAKQKREGTEEVTEEekAAAKAKAAAAAKAKAAALAKQKREGTE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 571 QARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARA--DGDAATLASAKDHTNQRVDAEA 648
Cdd:PRK07735 152 EVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAaaAAKAKAAALAKQKASQGNGDSG 231
|
250 260
....*....|....*....|....*....
gi 2084252795 649 QARADGDAATLASAKSHTEDYSVARGVEA 677
Cdd:PRK07735 232 DEDAKAKAIAAAKAKAAAAARAKTKGAEG 260
|
|
| LbR_Ice_bind |
cd12796 |
Ice-binding protein, left-handed beta-roll; The ice-binding protein of the grass Lolium ... |
64-174 |
2.17e-06 |
|
Ice-binding protein, left-handed beta-roll; The ice-binding protein of the grass Lolium perenne (LpIBP) discourages the recrystallization of ice. Ice-binding proteins produced by organisms to prevent the growing of ice are termed to anti-freeze proteins. LpIBP consists of an unusual left-handed beta roll. Ice-binding is mediated by a flat beta-sheet on one side of the helix.
Pssm-ID: 240609 [Multi-domain] Cd Length: 114 Bit Score: 47.39 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 64 SGATSANDQVIVGNHNNL----NNTMSSeiiGNYNTVNNSD-IVVRGESNTVSNAYGQVSGDSNKIDAANGTttVIGSSN 138
Cdd:cd12796 2 NSLSSFKNRVLSGSENNViaggQNLVVS---GSNNLVSGGNhNVLSGNNNTVSGNNHVVTGSNNVVTGNGNT--VSGSNN 76
|
90 100 110
....*....|....*....|....*....|....*.
gi 2084252795 139 NVTGQSNTAVGNGNTMTGRGSVAIGESTTTTASNSV 174
Cdd:cd12796 77 VVSGSNNTVSGGNNTVSGSNNTVSGSNHIVSGNNKV 112
|
|
| PRK07735 |
PRK07735 |
NADH-quinone oxidoreductase subunit C; |
373-649 |
4.49e-06 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 49.98 E-value: 4.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 373 LAASKDHTNQRVDAEAQARAdgdAATLAS--AKDHTNSRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAAT 450
Cdd:PRK07735 7 LEDLKKEAARRAKEEARKRL---VAKHGAeiSKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGTE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 451 LASAKDHTNQRVDAEAQARADgdAATLASAKDHTNQRVDAE--AQARADGDAATLASAKDHTNQRVDAEAQARADGDAAT 528
Cdd:PRK07735 84 EVTEEEKAKAKAKAAAAAKAK--AAALAKQKREGTEEVTEEekAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 529 LASAKdhtnqrvdAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKdhtnqrVDAEAQARADGDAATLA 608
Cdd:PRK07735 162 KEKAK--------AKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAA------AKAKAAALAKQKASQGN 227
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2084252795 609 SAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQ 649
Cdd:PRK07735 228 GDSGDEDAKAKAIAAAKAKAAAAARAKTKGAEGKKEEEPKQ 268
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
370-585 |
1.04e-05 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 49.18 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 370 AATLAASKDHTNQRVDAEAQARADGDAATLAsakdhtnsRVDAEAQARADGDAATLASAKDHTNQRVDAeAQARADGDAA 449
Cdd:PRK05035 492 LARVKAKKAAATQPIVIKAGARPDNSAVIAA--------REARKAQARARQAEKQAAAAADPKKAAVAA-AIARAKAKKA 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 450 TLASAKDHTNQRVD------AEAQARADGDAATLASAKDhTNQRVDAEAQARADGDAATLASAKdhtnqrvdaeAQARAD 523
Cdd:PRK05035 563 AQQAANAEAEEEVDpkkaavAAAIARAKAKKAAQQAASA-EPEEQVAEVDPKKAAVAAAIARAK----------AKKAEQ 631
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2084252795 524 GDAATLASAKDHTNQRVDAeAQARADGDAATLASAKDHTNQRVDAEAQAradgDAATLASAK 585
Cdd:PRK05035 632 QANAEPEEPVDPRKAAVAA-AIARAKARKAAQQQANAEPEEAEDPKKAA----VAAAIARAK 688
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
459-664 |
1.13e-05 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 49.18 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 459 NQRVDAEAQARAdgdaatlasakdhtnQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADgDAATLASAKDHTNQ 538
Cdd:PRK05035 459 QARLEREKAARE---------------ARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVI-KAGARPDNSAVIAA 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 539 RVDAEAQARADGDAATLASAKDHTNQRVDAeAQARADGDAATLASAKDHTNQRVD------AEAQARADGDAATLASAKD 612
Cdd:PRK05035 523 REARKAQARARQAEKQAAAAADPKKAAVAA-AIARAKAKKAAQQAANAEAEEEVDpkkaavAAAIARAKAKKAAQQAASA 601
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2084252795 613 hTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGD-----AATLASAKS 664
Cdd:PRK05035 602 -EPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPrkaavAAAIARAKA 657
|
|
| PRK07735 |
PRK07735 |
NADH-quinone oxidoreductase subunit C; |
439-718 |
1.72e-05 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 48.05 E-value: 1.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 439 EAQARADGDAATLASAKdHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADgdAATLASAKDHTNQRVDAEA 518
Cdd:PRK07735 13 EAARRAKEEARKRLVAK-HGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAK--AAALAKQKREGTEEVTEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 519 QARADGDAATLASAKdhtnqrvdaeaqaradgdAATLASAKDHTNQRVDAE--AQARADGDAATLASAKDHTNQRVDAEA 596
Cdd:PRK07735 90 KAKAKAKAAAAAKAK------------------AAALAKQKREGTEEVTEEekAAAKAKAAAAAKAKAAALAKQKREGTE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 597 QARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQAR----ADGDAATLASAKSHTEDysva 672
Cdd:PRK07735 152 EVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKaaaaAKAKAAALAKQKASQGN---- 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2084252795 673 rgveaGDGSVAVGKGSSATAAGSVAlgagSVADRANTVSVGAAGGE 718
Cdd:PRK07735 228 -----GDSGDEDAKAKAIAAAKAKA----AAAARAKTKGAEGKKEE 264
|
|
| AidA |
COG3468 |
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ... |
20-308 |
2.26e-05 |
|
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain] Cd Length: 846 Bit Score: 48.40 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 20 ITGVALMVTATGVAHAANTVDSRFTNTIVTGDGNSVTGNRDTHFSGATSANDQVIVGNHNNLNNTMSSEIIGNYNTVNNS 99
Cdd:COG3468 141 GGGGGGTGVGGTGAAAAGGGTGSGGGGSGGGGGAGGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 100 DIVVRGESNTVSNAYGQVS---GDSNKIDAANGTTTVIGSSNNVTGQSNTAVGNGNTMTGRGSVAIGESTTTTASNSVTL 176
Cdd:COG3468 221 AGGATGGAGSGGNTGGGVGgggGSAGGTGGGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGGGGGASGTGGGGTA 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 177 GTGSSNNRDNTVSVGSAGAERQITNVANGSTRTDASNVGQMQDGDAATLAAAKGYTDTKVAAEAKARADADAAEAKARAD 256
Cdd:COG3468 301 STGGGGGGGGGNGGGGGGGSNAGGGSGGGGGGGGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAG 380
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2084252795 257 GDAATLAASKDYTGQRVDAEAKARADADAAEAKARADGDAATLAASKDYTGQ 308
Cdd:COG3468 381 GGGANTGSDGVGTGLTTGGTGNNGGGGVGGGGGGGLTLTGGTLTVNGNYTGN 432
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
382-527 |
2.50e-05 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 47.49 E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 382 QRVDAEAQARADGDAATLASAKDHTNSRVDAEAQARADGDAAtlASAKDHTNQRVDAEAQARADGDAATLASAKdhTNQR 461
Cdd:PRK09510 119 QAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAA--KKAAAEAKKKAEAEAAKKAAAEAKKKAEAE--AAAK 194
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2084252795 462 VDAEAQARADGDAAtlASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAA 527
Cdd:PRK09510 195 AAAEAKKKAEAEAK--KKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAE 258
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
434-605 |
2.75e-05 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 47.49 E-value: 2.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 434 QRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAAtlASAKDHTNQR 513
Cdd:PRK09510 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAA--KKAAAEAKKK 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 514 VDAEAQARADGDAATLASAKdhTNQRVDAEAQARADGDAAtlASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVD 593
Cdd:PRK09510 171 AEAEAAKKAAAEAKKKAEAE--AAAKAAAEAKKKAEAEAK--KKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKA 246
|
170
....*....|..
gi 2084252795 594 AEAQARADGDAA 605
Cdd:PRK09510 247 AEKAAAAKAAAE 258
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
412-579 |
3.03e-05 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 47.49 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 412 AEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAAtlASAKDHTNQRVDAE 491
Cdd:PRK09510 97 AAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAA--KKAAAEAKKKAEAE 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 492 AQARADGDAATLASAKdhTNQRVDAEAQARADGDAAtlASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQ 571
Cdd:PRK09510 175 AAKKAAAEAKKKAEAE--AAAKAAAEAKKKAEAEAK--KKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKA 250
|
....*...
gi 2084252795 572 ARADGDAA 579
Cdd:PRK09510 251 AAAKAAAE 258
|
|
| ser_rich_anae_1 |
NF033849 |
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 ... |
28-218 |
8.31e-05 |
|
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 amino acids), which a highly serine-rich central region that averages over 300 aa in length. Species encoding members of this family of proteins tend to be anaerobic bacteria, including Gram-positive bacteria of the human gut microbiome and Chloroflexi from marine sediments.
Pssm-ID: 468206 [Multi-domain] Cd Length: 1122 Bit Score: 46.54 E-value: 8.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 28 TATGVAHAANTVDSRFTNTIVTGDGNSVTGNRDTHFSGATSANDQVIVGNHNNLNNTMSSEIIGNYNTVNNSDIVVRGES 107
Cdd:NF033849 301 SSVGTSESQSHGTTEGTSTTDSSSHSQSSSYNVSSGTGVSSSHSDGTSQSTSISHSESSSESTGTSVGHSTSSSVSSSES 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 108 NTVSNAYGQVSGDSNKIDAANGTTTVIGSSNNVTGQSNTAVGNGNTMTGRGSvaigeSTTTTASNSVTLGTGSSNNRDNT 187
Cdd:NF033849 381 SSRSSSSGVSGGFSGGIAGGGVTSEGLGASQGGSEGWGSGDSVQSVSQSYGS-----SSSTGTSSGHSDSSSHSTSSGQA 455
|
170 180 190
....*....|....*....|....*....|.
gi 2084252795 188 VSVGSAGAERQITNVANGSTRTDASNVGQMQ 218
Cdd:NF033849 456 DSVSQGTSWSEGTGTSQGQSVGTSESWSTSQ 486
|
|
| LbR_Ice_bind |
cd12796 |
Ice-binding protein, left-handed beta-roll; The ice-binding protein of the grass Lolium ... |
78-188 |
9.91e-05 |
|
Ice-binding protein, left-handed beta-roll; The ice-binding protein of the grass Lolium perenne (LpIBP) discourages the recrystallization of ice. Ice-binding proteins produced by organisms to prevent the growing of ice are termed to anti-freeze proteins. LpIBP consists of an unusual left-handed beta roll. Ice-binding is mediated by a flat beta-sheet on one side of the helix.
Pssm-ID: 240609 [Multi-domain] Cd Length: 114 Bit Score: 42.39 E-value: 9.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 78 HNNLNNTMSSEIIGNYNTV--NNSDIVVRGESNTVSNAYGQVSGDSNKidAANGTTTVI-GSSNNVTGQSNTAVGNGNTM 154
Cdd:cd12796 1 NNSLSSFKNRVLSGSENNViaGGQNLVVSGSNNLVSGGNHNVLSGNNN--TVSGNNHVVtGSNNVVTGNGNTVSGSNNVV 78
|
90 100 110
....*....|....*....|....*....|....
gi 2084252795 155 TGRGSVAIGESTTTTASNSVTLGTGSSNNRDNTV 188
Cdd:cd12796 79 SGSNNTVSGGNNTVSGSNNTVSGSNHIVSGNNKV 112
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
53-777 |
1.34e-04 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 45.91 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 53 NSVTGNRDTHFSGATSANDQVIVGNHNNLNNTMSSEIIGNYNTVNNSDIVVRGESNTVSNAYGQVSGDSNKIDAANGTTT 132
Cdd:COG3210 796 IDITADGTITAAGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAA 875
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 133 VIGSSNNVTGQSNTAVGNGNTMTGRGSVAIGESTTTTASNSVTLGTGSSNNRDNTVSVGSAGAERQITNVANGSTRTDAS 212
Cdd:COG3210 876 SITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLS 955
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 213 NVGQMQDGDAATLAAAKGYTDTKVAAEAKARADADAAEAKARADGDAATLAASKDYTGQRVDAEAKARADADAAEAKARA 292
Cdd:COG3210 956 AASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTG 1035
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 293 DGDAATLAASKDYTGQRVDAEAKARADADAAEAKARADGDAATLAASKDYTGQRVDAEAKARADADAAEAKARADGDAAT 372
Cdd:COG3210 1036 TAATAGGQNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGG 1115
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 373 LAASKDHTNQRVDAEAQARADGDAATLASAKDH-TNSRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATL 451
Cdd:COG3210 1116 VTASKVGGTTTVGATGTSTASTEAAGAGTLTGLvAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAG 1195
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 452 ASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLAS 531
Cdd:COG3210 1196 TDLKGGDSTGGSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAG 1275
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 532 AKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAK 611
Cdd:COG3210 1276 NAGATATGSTVDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGG 1355
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 612 DHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKSHTEDYSVARGVEAGDGSVAVGKGSSAT 691
Cdd:COG3210 1356 NGATDSAAGAGSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSGTGVGNNGGVSGTTVAGTTGSSATTGTG 1435
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 692 AAGSVALGAGSVADRANTVSVGAAGGERQITNVRAGTAATDAVNLSQMQAADLQTLNSANQYTDSREVAIRQDMYAGDVN 771
Cdd:COG3210 1436 GTGNTTGTSVAGAGGGNADASAINTGNASSLGAGGSTAGNAVGGAVIGGTTTGGNGAGVAGATASNGGTSTGAGGTAGGT 1515
|
....*.
gi 2084252795 772 TLNSAN 777
Cdd:COG3210 1516 TAEVAK 1521
|
|
| PRK07735 |
PRK07735 |
NADH-quinone oxidoreductase subunit C; |
368-597 |
1.42e-04 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 45.36 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 368 GDAATLAASKDHTNQRVDAEAQARADGDAATLASAKDHTNSRVDAEAQARADgdAATLASAKDHTNQRVDAE--AQARAD 445
Cdd:PRK07735 53 DMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAK--AAALAKQKREGTEEVTEEekAAAKAK 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 446 GDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARAdgd 525
Cdd:PRK07735 131 AAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKA--- 207
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2084252795 526 aatLASAKdhtnqrvdAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQ 597
Cdd:PRK07735 208 ---AAAAK--------AKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAKTKGAEGKKEEEPKQ 268
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
21-798 |
2.36e-04 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 45.14 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 21 TGVALMVTATGVAHAANTVDSRFTNTIVTGDGNSVTGNRDTHFSGATSANDQVIVGNHNNLNNtmssEIIGNYNTVNNSD 100
Cdd:COG3210 665 NTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTGQIGALANANG----DTVTFGNLGTGAT 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 101 IVVRGESNTVSNAYGQVSGDSNKIDAANGTTTVIGSSNNVTGQSNTAVGNGNTMTGRGSVAIGESTTTTASNSVTLGTGS 180
Cdd:COG3210 741 LTLNAGVTITSGNAGTLSIGLTANTTASGTTLTLANANGNTSAGATLDNAGAEISIDITADGTITAAGTTAINVTGSGGT 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 181 SNNRDNTVSVGSAGAERQITNVANGSTRTDASNVGQMQDGDAATLAAAKGYTDTKVAAEAKARADADAAEAKARADGDAA 260
Cdd:COG3210 821 ITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNLG 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 261 TLAASKDYTGQRVDAEAKARADADAAEAKARADGDAATLAASKDYTGQRVDAEAKARADADAAEAKARADGDAATLAASK 340
Cdd:COG3210 901 TTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTS 980
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 341 DYTGQRVDAEAKARADADAAEAKARADGDAATLAASKDHTNQRVDAEAQARADGDAATLASAKDHTNSRVDAEAQARADG 420
Cdd:COG3210 981 ANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNGVGVNASGISGGNAAA 1060
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 421 DAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDA 500
Cdd:COG3210 1061 LTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTTTVGATGTSTASTEAA 1140
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 501 ATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAAT 580
Cdd:COG3210 1141 GAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGGDSTGGSTTTIGTTNVTTTT 1220
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 581 LASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLA 660
Cdd:COG3210 1221 TLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATATGSTVDIGSTSATSAGGSL 1300
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 661 SAKSHTEDYSVARGVEAGDGSVAVGKGSSATAAGSVALGAGSVADRANTVSVGAAGGERQITNVRAGTAATDAVNLSQMQ 740
Cdd:COG3210 1301 DTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGATDSAAGAGSGGAAGSLAATAGA 1380
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 2084252795 741 AADLQTLNSANQYTDSREVAIRQDMYAGDVNTLNSANHYTDQRIDALDNSFNDALAGA 798
Cdd:COG3210 1381 GTVLTGAGNNTGAEGTNAGRDGGVTTSGTGVGNNGGVSGTTVAGTTGSSATTGTGGTG 1438
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
28-775 |
3.79e-04 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 44.37 E-value: 3.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 28 TATGVAHAANTVDSRFTNTIVTGDGNSVTGNRDTHFSGATSANDQVIVGNHNNLNNTMSSEIIGNYNTVNNSDIVVRGES 107
Cdd:COG3210 12 KTIGVDIAVTTTAATLGSNTAGTSGLNILGSGGVGTAGGIASNAGTTASTSGGSGTAGGVGNTSASTGGIGAAAANTAGT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 108 NTVSNAYGQVSGDSNKIDAANGTTTVIGSSNNVTGQSNTAVGNGNTMTGRGSVAIGESTTTTASNSVTLGTGSSNNRDNT 187
Cdd:COG3210 92 LETGLTSNIGGGSVNGSNSTGNGTLTTTAASATTGNNTGGTTTSSTNTVTTLGGTTTGNTVLSTSGAGNNTNTNNSSSGT 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 188 VSVGSAGAERQITNVANGSTRTDASNVGQMQDGDAATLAAAKGYTDTKVAAEAKARADADAAEAKARADGDAATLAASKD 267
Cdd:COG3210 172 NIGNSIPTTGGSLNVVAANPTGVTGVGGALINATAGVLANAGGGTAGGVASANSTLTGGVVAAGTGAGVISTGGTDISSL 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 268 YTGQRVDAEAKARADADAAEAKARADGDAATLAASkdyTGQRVDAEAKARADADAAEAKARADGDAATLAASKDYTGQRV 347
Cdd:COG3210 252 SVAAGAGTGGAGGTGNAGNTTIGTTVTGTNATGSN---TAGASSGDTTTNGTSSVTGAGGTGVLGGGTAAGITTTNTVGG 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 348 DAEAKARADADAAEAKARADGDAATLAASKDHTNQRVDAEAQARADGDAATLASAKDHTNSRVDAEAQARADGDAATLAS 427
Cdd:COG3210 329 NGDGNNTTANSGAGLVSGGTGGNNGTTGTGAGSGLTGTGNGGGLTTAGAGTVASTVGTATASTGNASSTTVLGSGSLATG 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 428 AKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAK 507
Cdd:COG3210 409 NTGTTIAGNGGSANAGGFTTTGGVLGITGNGTVTGGTIGGLTGSGTTNGAGLSGNTDVSGTGTVTNSAGNTTSATTLAGG 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 508 DHTNQRVDAEAQARADGDAATLASAKDHTNqrvdaeAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDH 587
Cdd:COG3210 489 GIGTVTTNATISNNAGGDANGIATGLTGIT------AGGGGGGNATSGGTGGDGTTLSGSGLTTTVSGGASGTTAASGSN 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 588 TNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAkshte 667
Cdd:COG3210 563 TANTLGVLAATGGTSNATTAGNSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGS----- 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 668 DYSVARGVEAGDGSVAVGKGSSATAAGSVALGAGSVADRANTVSVGAAGGERQITNVRAGTAATDAVNLSQMQAADLQTL 747
Cdd:COG3210 638 AVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTG 717
|
730 740
....*....|....*....|....*...
gi 2084252795 748 NSANQYTDSREVAIRQDMYAGDVNTLNS 775
Cdd:COG3210 718 QIGALANANGDTVTFGNLGTGATLTLNA 745
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
412-828 |
9.49e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 42.92 E-value: 9.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 412 AEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAE 491
Cdd:COG3899 762 EEAEALLERALAARALAALAALRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILH 841
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 492 AQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDH---TNQRVDA 568
Cdd:COG3899 842 WLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAalaAAELARL 921
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 569 EAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAqARADGDAATLASAKDHTNQRVDAEA 648
Cdd:COG3899 922 AAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAA-AAAAAAAAAAAAAAALEAAAAALLA 1000
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 649 QARADGDAATLASAKSHTEDYSVARGVEAGDGSVAVGKGSSATAAGSVALGAGSVADRANTVSVGAAGGERQITNVRAGT 728
Cdd:COG3899 1001 LLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAA 1080
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 729 AATDAVNLSQMQAADLQTLNSANQYTDSREVAIRQDMYAGDVNTLNSANHYTDQRIDALDNSFNDALAGAYSYVRKENQQ 808
Cdd:COG3899 1081 AAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAALALALAALLLLAALLLALA 1160
|
410 420
....*....|....*....|
gi 2084252795 809 MRQEYRAIGALAMATAAIGI 828
Cdd:COG3899 1161 LLLLALAALALAAALAALAA 1180
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
432-662 |
9.88e-04 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 42.53 E-value: 9.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 432 TNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADgdaatlASAKDHTNQRVDAEAQARADGDAATLASAKdhtn 511
Cdd:TIGR02794 48 VAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAE------QARQKELEQRAAAEKAAKQAEQAAKQAEEK---- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 512 QRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAK---DHTNQRVDAEAQARADGDAatlaSAKDHT 588
Cdd:TIGR02794 118 QKQAEEAKAKQAAEAKAKAEAEAERKAKEEAAKQAEEEAKAKAAAEAKkkaEEAKKKAEAEAKAKAEAEA----KAKAEE 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2084252795 589 NQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASA 662
Cdd:TIGR02794 194 AKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADEAELGDIFGLASGSNAEKQGGARGAAAGSEVDKYAAI 267
|
|
| YadA_stalk |
pfam05662 |
Coiled stalk of trimeric autotransporter adhesin; This short motif is found in invasins and ... |
720-756 |
1.07e-03 |
|
Coiled stalk of trimeric autotransporter adhesin; This short motif is found in invasins and haemagglutinins, normally associated with (pfam05658).
Pssm-ID: 428572 [Multi-domain] Cd Length: 43 Bit Score: 37.55 E-value: 1.07e-03
10 20 30
....*....|....*....|....*....|....*..
gi 2084252795 720 QITNVRAGTAATDAVNLSQMQAADLQTLNSANQYTDS 756
Cdd:pfam05662 1 KITNVAAGTVSTDAVNGSQLYAVNQSVSNGANNVTSG 37
|
|
| Hia |
COG5295 |
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, ... |
28-450 |
3.14e-03 |
|
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444098 [Multi-domain] Cd Length: 785 Bit Score: 41.29 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 28 TATGVAHAANTVDSRFTNTIVTGDGNSVTGNRDTHFSGATSANDQVIVGNHNNLNNTMSSEIIGNYNTVNNSDIVVRGES 107
Cdd:COG5295 207 AASASSSATGTSASVGVNAGAATGSAASAGGSASAGAASGNATTASASSVSGSAVAAGTASTATTASTTAASGAAGTATA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 108 NTVSNAYGQVSGDSNKIDAANGTTTVIGSSNNVTGQSNTAVGNGNTMTGRGSVAIGESTTTTASNSVTLGTGSSNNRDNT 187
Cdd:COG5295 287 AAGGDAAAAGSASSTGAANATAGGGNAGSGGGGAAALGSAGGSSGVGTASGASAAAATNDGTANGAGTSAAADATSGGGA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 188 VSVGSAGAERQITNVANGSTRTDASNVGQMQDGDAATLAAAKGYTDTKVAAEAKARADADAAEAKARADGDAATLAASKD 267
Cdd:COG5295 367 GGGGAAATSSSGGSATAAGNAAGAAGAGSAGSGGSSTGASAGGGASAAGGAAAGSAAAGTSSNTSAVGASNGASGTSSSA 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 268 YTGQRVDAEAKARADADAAEAKARADGDAAT-LAASKDYTGQRVDAEAKARADADAAEAKARADGDAATLAASKDYTGQR 346
Cdd:COG5295 447 SSAGAAGGGTAGAGGAANVGAATTAASAAATaAAATSSAAIAGATATGAGAAAGGAGAGAAGGAGSAAAGGAANAAAASG 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 347 VDAEAKARADADAAEAKARADGDAATLAASKDHTNQRVDAEAQARADGDAATLASAKDHTNSRVDAEAQARADGDAATLA 426
Cdd:COG5295 527 ATATAGSAGGGAAAAAGGGSTTAATGTNSVAVGNNTATGANSVALGAGSVASGANSVSVGAAGAENVAAGATDTDAVNGG 606
|
410 420
....*....|....*....|....
gi 2084252795 427 SAKDHTNQRVDAEAQARADGDAAT 450
Cdd:COG5295 607 GAVATGDNSVAVGNNAQASGANSV 630
|
|
| PRK07735 |
PRK07735 |
NADH-quinone oxidoreductase subunit C; |
491-730 |
3.92e-03 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 40.73 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 491 EAQARADGDAATLASAKdHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADgdAATLASAKDHTNQRVDAEA 570
Cdd:PRK07735 13 EAARRAKEEARKRLVAK-HGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAK--AAALAKQKREGTEEVTEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 571 QARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKdhtnqrVDAEAQARADGDAATLASAKDHTNQRVDAEAQA 650
Cdd:PRK07735 90 KAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAK------AAAAAKAKAAALAKQKREGTEEVTEEEEETDKE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 651 RADGDAATLASAKSHTEDYSVARGVEAGDGSVAVGKGSSATAAGSVALGAGSVADRANTVSVGAAGGERQITNVRAGTAA 730
Cdd:PRK07735 164 KAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAA 243
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
426-636 |
4.13e-03 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 40.21 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 426 ASAKDHTNQRVDAEAQARADGDAATLASAKD--HTNQRVDAEAQARADGDAATLASAKdhtnQRVDAEAQARADGDAATL 503
Cdd:TIGR02794 60 KPAAKKEQERQKKLEQQAEEAEKQRAAEQARqkELEQRAAAEKAAKQAEQAAKQAEEK----QKQAEEAKAKQAAEAKAK 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 504 ASAKDHTNQRVDAEAQARADGDAATLASAK---DHTNQRVDAEAQARADGDAatlaSAKDHTNQRVDAEAQARADGDAAT 580
Cdd:TIGR02794 136 AEAEAERKAKEEAAKQAEEEAKAKAAAEAKkkaEEAKKKAEAEAKAKAEAEA----KAKAEEAKAKAEAAKAKAAAEAAA 211
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2084252795 581 LASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASA 636
Cdd:TIGR02794 212 KAEAEAAAAAAAEAERKADEAELGDIFGLASGSNAEKQGGARGAAAGSEVDKYAAI 267
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
369-565 |
4.13e-03 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 40.73 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 369 DAATLAASKDHTNQRVDAEAQARAdgdAATLASAKDHTNSRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDA 448
Cdd:PRK13108 281 APGALRGSEYVVDEALEREPAELA---AAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDG 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 449 ATLASAKDHTnqrvDAEAQARADGDAATLASAKDhtnqRVDAEAQARADGDAATLASAkDHtnqrvDAEAQARADGDAAT 528
Cdd:PRK13108 358 ESTPAVEETS----EADIEREQPGDLAGQAPAAH----QVDAEAASAAPEEPAALASE-AH-----DETEPEVPEKAAPI 423
|
170 180 190
....*....|....*....|....*....|....*..
gi 2084252795 529 LASAKDhtNQRVDAEAQARADGDAATLASAKDHTNQR 565
Cdd:PRK13108 424 PDPAKP--DELAVAGPGDDPAEPDGIRRQDDFSSRRR 458
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
548-707 |
5.44e-03 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 40.35 E-value: 5.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 548 ADGDAATLASAKdhtnqrVDAEAQARADGDAATLASAkDHTNQRVDAEAQARADGDAATLASAKD----HTNQRVD---- 619
Cdd:PRK13108 296 LEREPAELAAAA------VASAASAVGPVGPGEPNQP-DDVAEAVKAEVAEVTDEVAAESVVQVAdrdgESTPAVEetse 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 620 AEAQARADGDAATLASAKDhtnqRVDAEAQARADGDAATLASAKSHTEDYSVArgvEAGDGSVAVGKGSSATAAGSVALG 699
Cdd:PRK13108 369 ADIEREQPGDLAGQAPAAH----QVDAEAASAAPEEPAALASEAHDETEPEVP---EKAAPIPDPAKPDELAVAGPGDDP 441
|
....*...
gi 2084252795 700 AGSVADRA 707
Cdd:PRK13108 442 AEPDGIRR 449
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
538-717 |
5.84e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 40.17 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 538 QRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAAtlASAKDHTNQR 617
Cdd:PRK09510 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAA--KKAAAEAKKK 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 618 VDAEAQARADGDAATLASAKDHTNQRVDAEAQARADGDAATLASAKSHTEDYSVARGVEAGDGSVAVGKGSSATAAGSVA 697
Cdd:PRK09510 171 AEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKA 250
|
170 180
....*....|....*....|
gi 2084252795 698 LGAGSVADRANTVSVGAAGG 717
Cdd:PRK09510 251 AAAKAAAEVDDLFGGLDSGK 270
|
|
| LbR_Ice_bind |
cd12796 |
Ice-binding protein, left-handed beta-roll; The ice-binding protein of the grass Lolium ... |
37-124 |
7.57e-03 |
|
Ice-binding protein, left-handed beta-roll; The ice-binding protein of the grass Lolium perenne (LpIBP) discourages the recrystallization of ice. Ice-binding proteins produced by organisms to prevent the growing of ice are termed to anti-freeze proteins. LpIBP consists of an unusual left-handed beta roll. Ice-binding is mediated by a flat beta-sheet on one side of the helix.
Pssm-ID: 240609 [Multi-domain] Cd Length: 114 Bit Score: 36.99 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 37 NTVDSRFTNTIVTGDGNSVTGNRDTHFSG---ATSANDQVIVGNHNNL---NNTMSSE---IIGNYNTVNNSDIVVRGES 107
Cdd:cd12796 17 NNVIAGGQNLVVSGSNNLVSGGNHNVLSGnnnTVSGNNHVVTGSNNVVtgnGNTVSGSnnvVSGSNNTVSGGNNTVSGSN 96
|
90
....*....|....*..
gi 2084252795 108 NTVSNAYGQVSGDSNKI 124
Cdd:cd12796 97 NTVSGSNHIVSGNNKVV 113
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
418-591 |
8.37e-03 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 39.58 E-value: 8.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 418 ADGDAATLASAKdhtnqrVDAEAQARADGDAATLASAkDHTNQRVDAEAQARADGDAATLASAKD----HTNQRVD---- 489
Cdd:PRK13108 296 LEREPAELAAAA------VASAASAVGPVGPGEPNQP-DDVAEAVKAEVAEVTDEVAAESVVQVAdrdgESTPAVEetse 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 490 AEAQARADGDAATLASAKDhtnqRVDAEAQARADGDAATLASAkDHtnqrvDAEAQARADGDAATLASAKDhtNQRVDAE 569
Cdd:PRK13108 369 ADIEREQPGDLAGQAPAAH----QVDAEAASAAPEEPAALASE-AH-----DETEPEVPEKAAPIPDPAKP--DELAVAG 436
|
170 180
....*....|....*....|..
gi 2084252795 570 AQARADGDAATLASAKDHTNQR 591
Cdd:PRK13108 437 PGDDPAEPDGIRRQDDFSSRRR 458
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
444-617 |
8.37e-03 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 39.58 E-value: 8.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 444 ADGDAATLASAKdhtnqrVDAEAQARADGDAATLASAkDHTNQRVDAEAQARADGDAATLASAKD----HTNQRVD---- 515
Cdd:PRK13108 296 LEREPAELAAAA------VASAASAVGPVGPGEPNQP-DDVAEAVKAEVAEVTDEVAAESVVQVAdrdgESTPAVEetse 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 516 AEAQARADGDAATLASAKDhtnqRVDAEAQARADGDAATLASAkDHtnqrvDAEAQARADGDAATLASAKDhtNQRVDAE 595
Cdd:PRK13108 369 ADIEREQPGDLAGQAPAAH----QVDAEAASAAPEEPAALASE-AH-----DETEPEVPEKAAPIPDPAKP--DELAVAG 436
|
170 180
....*....|....*....|..
gi 2084252795 596 AQARADGDAATLASAKDHTNQR 617
Cdd:PRK13108 437 PGDDPAEPDGIRRQDDFSSRRR 458
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
470-643 |
8.37e-03 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 39.58 E-value: 8.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 470 ADGDAATLASAKdhtnqrVDAEAQARADGDAATLASAkDHTNQRVDAEAQARADGDAATLASAKD----HTNQRVD---- 541
Cdd:PRK13108 296 LEREPAELAAAA------VASAASAVGPVGPGEPNQP-DDVAEAVKAEVAEVTDEVAAESVVQVAdrdgESTPAVEetse 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084252795 542 AEAQARADGDAATLASAKDhtnqRVDAEAQARADGDAATLASAkDHtnqrvDAEAQARADGDAATLASAKDhtNQRVDAE 621
Cdd:PRK13108 369 ADIEREQPGDLAGQAPAAH----QVDAEAASAAPEEPAALASE-AH-----DETEPEVPEKAAPIPDPAKP--DELAVAG 436
|
170 180
....*....|....*....|..
gi 2084252795 622 AQARADGDAATLASAKDHTNQR 643
Cdd:PRK13108 437 PGDDPAEPDGIRRQDDFSSRRR 458
|
|
| |
