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Conserved domains on  [gi|2105575182|ref|WP_225315882|]
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MULTISPECIES: YolD-like family protein [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YolD super family cl07456
YolD-like protein; Members of this family are functionally uncharacterized. However it has ...
 2-54 2.31e-10

YolD-like protein; Members of this family are functionally uncharacterized. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from gram-negative bacteria. This family has been shown to belong to the WYL-like superfamily.


The actual alignment was detected with superfamily member pfam08863:

Pssm-ID: 430270  Cd Length: 94  Bit Score: 51.41  E-value: 2.31e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 2105575182  2 MLPEHVELIKEYHEGLDKVKKPVLDEQKYDELNNKVIRdAMEENKLLQFFFYQ 54
Cdd:pfam08863  1 MLPEHVEALRELIEEQKKVEKPILDEQQLEEINEILQE-ALEENQPVTITYYD 52
 
Name Accession Description Interval E-value
YolD pfam08863
YolD-like protein; Members of this family are functionally uncharacterized. However it has ...
 2-54 2.31e-10

YolD-like protein; Members of this family are functionally uncharacterized. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from gram-negative bacteria. This family has been shown to belong to the WYL-like superfamily.


Pssm-ID: 430270  Cd Length: 94  Bit Score: 51.41  E-value: 2.31e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 2105575182  2 MLPEHVELIKEYHEGLDKVKKPVLDEQKYDELNNKVIRdAMEENKLLQFFFYQ 54
Cdd:pfam08863  1 MLPEHVEALRELIEEQKKVEKPILDEQQLEEINEILQE-ALEENQPVTITYYD 52
 
Name Accession Description Interval E-value
YolD pfam08863
YolD-like protein; Members of this family are functionally uncharacterized. However it has ...
 2-54 2.31e-10

YolD-like protein; Members of this family are functionally uncharacterized. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from gram-negative bacteria. This family has been shown to belong to the WYL-like superfamily.


Pssm-ID: 430270  Cd Length: 94  Bit Score: 51.41  E-value: 2.31e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 2105575182  2 MLPEHVELIKEYHEGLDKVKKPVLDEQKYDELNNKVIRdAMEENKLLQFFFYQ 54
Cdd:pfam08863  1 MLPEHVEALRELIEEQKKVEKPILDEQQLEEINEILQE-ALEENQPVTITYYD 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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