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Conserved domains on  [gi|2107006895|ref|WP_225510042|]
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TraX family protein [Bacillus subtilis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TraX super family cl05434
TraX protein; This family consists of several bacterial TraX proteins. TraX is responsible for ...
 13-31 4.08e-03

TraX protein; This family consists of several bacterial TraX proteins. TraX is responsible for the amino-terminal acetylation of F-pilin subunits.


The actual alignment was detected with superfamily member PRK13882:

Pssm-ID: 414418  Cd Length: 232  Bit Score: 31.97  E-value: 4.08e-03
                          10
                  ....*....|....*....
gi 2107006895  13 MKWAFYVFYPLHLTMIILI 31
Cdd:PRK13882  202 LRWAFYAYYPLHLAALWLI 220
 
Name Accession Description Interval E-value
PRK13882 PRK13882
conjugal transfer protein TrbP; Provisional
 13-31 4.08e-03

conjugal transfer protein TrbP; Provisional


Pssm-ID: 237542  Cd Length: 232  Bit Score: 31.97  E-value: 4.08e-03
                          10
                  ....*....|....*....
gi 2107006895  13 MKWAFYVFYPLHLTMIILI 31
Cdd:PRK13882  202 LRWAFYAYYPLHLAALWLI 220
TraX pfam05857
TraX protein; This family consists of several bacterial TraX proteins. TraX is responsible for ...
 1-31 5.51e-03

TraX protein; This family consists of several bacterial TraX proteins. TraX is responsible for the amino-terminal acetylation of F-pilin subunits.


Pssm-ID: 399098  Cd Length: 215  Bit Score: 31.55  E-value: 5.51e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2107006895   1 MYNGKESYSSIFMKWAFYVFYPLHLTMIILI 31
Cdd:pfam05857 184 LARAKNGVRIPRLRRFFYAFYPGHLAVLGLL 214
 
Name Accession Description Interval E-value
PRK13882 PRK13882
conjugal transfer protein TrbP; Provisional
 13-31 4.08e-03

conjugal transfer protein TrbP; Provisional


Pssm-ID: 237542  Cd Length: 232  Bit Score: 31.97  E-value: 4.08e-03
                          10
                  ....*....|....*....
gi 2107006895  13 MKWAFYVFYPLHLTMIILI 31
Cdd:PRK13882  202 LRWAFYAYYPLHLAALWLI 220
TraX pfam05857
TraX protein; This family consists of several bacterial TraX proteins. TraX is responsible for ...
 1-31 5.51e-03

TraX protein; This family consists of several bacterial TraX proteins. TraX is responsible for the amino-terminal acetylation of F-pilin subunits.


Pssm-ID: 399098  Cd Length: 215  Bit Score: 31.55  E-value: 5.51e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2107006895   1 MYNGKESYSSIFMKWAFYVFYPLHLTMIILI 31
Cdd:pfam05857 184 LARAKNGVRIPRLRRFFYAFYPGHLAVLGLL 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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