|
Name |
Accession |
Description |
Interval |
E-value |
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
74-998 |
1.43e-50 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 193.76 E-value: 1.43e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 74 ALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALStfpvssgswsdkgdelFKLKKyvEAINCYdksfAADTYVSTVW 153
Cdd:TIGR02917 48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALS----------------LGYPK--NQVLPL----LARAYLLQGK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 154 YQKALA--SEKMGLDEETLASYnksielnsnssrsLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKF 231
Cdd:TIGR02917 106 FQQVLDelPGKTLLDDEGAAEL-------------LALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 232 GDYEAAVDCYDKAISFNPDMVNAWHKKGiNLERV-GAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYD 310
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGNVDALLLKG-DLLLSlGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHAD 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 311 EILTYNPGNSEAWYSKGSLLNKAGKYDAAIACFDKALNPDTG-IQVEEIGGELLEKLSVYEASLSCYSE----TPEFEsP 385
Cdd:TIGR02917 252 ALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEyLPALLLAGASEYQLGNLEQAYQYLNQilkyAPNSH-Q 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 386 VVKIwyeKALSLDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDS 465
Cdd:TIGR02917 331 ARRL---LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 466 SKIKDYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDC 545
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 546 YNQTLQIDPDYSAARFKLSE-NLGQSSTEASVSESVKYISMDANPVQALSGgfwsylLNHKYANSNDESElseDLNFFSP 624
Cdd:TIGR02917 488 FEKALSIEPDFFPAAANLARiDIQEGNPDDAIQRFEKVLTIDPKNLRAILA------LAGLYLRTGNEEE---AVAWLEK 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 625 EFGYD----APWSGKAAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAW 700
Cdd:TIGR02917 559 AAELNpqeiEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALAL 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 701 YGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNK 780
Cdd:TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 781 SEDALADYDRIIELEPdNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRIL 860
Cdd:TIGR02917 719 YPAAIQAYRKALKRAP-SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV 797
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 861 ELNPGDVDAYNNKGFALYKLeKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTissnkaalncfdrvvqlkpdcitawyn 940
Cdd:TIGR02917 798 KKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLAPNIPAILDTLGWLLVE--------------------------- 849
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 941 kgfinnmMGNTEEAILCYDSALAIDPNSPSTLYNKRFALYNLKKLDEAevcKAKLDEI 998
Cdd:TIGR02917 850 -------KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA---RKELDKL 897
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
181-1006 |
4.01e-47 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 182.98 E-value: 4.01e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 181 SNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFN-------PDMVN 253
Cdd:TIGR02917 19 DQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGypknqvlPLLAR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 254 AWHKKG----------------------INLERVGAY------EEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEA 305
Cdd:TIGR02917 99 AYLLQGkfqqvldelpgktllddegaaeLLALRGLAYlglgqlELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 306 LKCYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIACFDKALnpdtgiqveeiggELleklsvyeaslscyseTPEFESP 385
Cdd:TIGR02917 179 RALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAI-------------AL----------------RPNNIAV 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 386 VvkiwYEKALSLDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDS 465
Cdd:TIGR02917 230 L----LALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASE 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 466 SKIKDYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDC 545
Cdd:TIGR02917 306 YQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEY 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 546 YNQTLQIDPDYSAARFKLS-ENLGQSSTEASVSESVKYISMDANPVQALSGGFWSYLLNHKY--ANSNDESELSEDLNff 622
Cdd:TIGR02917 386 LAKATELDPENAAARTQLGiSKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFdkALAAAKKLEKKQPD-- 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 623 SPefgydAPWSGKAAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYG 702
Cdd:TIGR02917 464 NA-----SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 703 IASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSE 782
Cdd:TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN 618
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 783 DALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILEL 862
Cdd:TIGR02917 619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 863 NPGDVdaynnKGFAL----YKLEK-YQLAIDCYNKALEYDPdNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITA 937
Cdd:TIGR02917 699 HPKAA-----LGFELegdlYLRQKdYPAAIQAYRKALKRAP-SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051152 938 WYNKGFINNMMGNTEEAILCYDSALAIDPNSPSTLYNKRFALYNLKK---LDEAEvcKA-KLDEIDPGFVDAL 1006
Cdd:TIGR02917 773 RTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDpraLEYAE--RAlKLAPNIPAILDTL 843
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
666-922 |
1.41e-46 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 168.37 E-value: 1.41e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 666 WYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLG 745
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 746 RYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERM 825
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 826 LEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLY 905
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250
|
250
....*....|....*..
gi 2124051152 906 LqGCAYLTISSNKAALN 922
Cdd:COG2956 251 L-ADLLERKEGLEAALA 266
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
44-963 |
2.76e-46 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 180.28 E-value: 2.76e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 44 RPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPVSSGSWSDKG 123
Cdd:TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 124 DELFKLKKYVEAincydksfaadtyvstvwyqkalasekmgldeetLASYNKSIELNSNSSRSLQMQGTAYIGLEQYKEA 203
Cdd:TIGR02917 201 DLLLSLGNIELA----------------------------------LAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 204 MEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPDMVNAWHKKGINLERVGAYEEALACYDFVLLSEP 283
Cdd:TIGR02917 247 EKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 284 ENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIACFDKA--LNPDTGIQVEEIGge 361
Cdd:TIGR02917 327 NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKAteLDPENAAARTQLG-- 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 362 lLEKLSVYEASLScysetpefespvvkiwyekalsldkLGKYETAIEcydevLETEPGHAvvwymkgldldklgrykeai 441
Cdd:TIGR02917 405 -ISKLSQGDPSEA-------------------------IADLETAAQ-----LDPELGRA-------------------- 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 442 ecyDRALKLDsrhakvwykkGLDSSKIkdydsavksyDKALKIDKnytlawygkafalaklgeyesslkcynKVLDAVPD 521
Cdd:TIGR02917 434 ---DLLLILS----------YLRSGQF----------DKALAAAK---------------------------KLEKKQPD 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 522 SADVWYNKGLVLDELGKHAEASDCYNQTLQIDPDYSAARFKLSE-NLGQSSTEASVSESVKYISMDANPVQALSGgfwsy 600
Cdd:TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARiDIQEGNPDDAIQRFEKVLTIDPKNLRAILA----- 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 601 lLNHKYANSNDEselSEDLNFFSPEFGYD----APWSGKAAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERL 676
Cdd:TIGR02917 539 -LAGLYLRTGNE---EEAVAWLEKAAELNpqeiEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 677 DRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTT 756
Cdd:TIGR02917 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS 694
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 757 LLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPdNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEII 836
Cdd:TIGR02917 695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP-SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 837 YRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLeKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISS 916
Cdd:TIGR02917 774 TALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLAPNIPAILDTLGWLLVEKGE 852
|
890 900 910 920
....*....|....*....|....*....|....*....|....*....
gi 2124051152 917 NKAALNCFDRVVQLKPDCITAWYN--KGFINNmmGNTEEAILCYDSALA 963
Cdd:TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHlaLALLAT--GRKAEARKELDKLLN 899
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
632-895 |
4.19e-43 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 158.35 E-value: 4.19e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 632 WSGKAAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLG 711
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 712 RLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRI 791
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 792 IELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDvDAYN 871
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLL 249
|
250 260
....*....|....*....|....
gi 2124051152 872 NKGFALYKLEKYQLAIDCYNKALE 895
Cdd:COG2956 250 ALADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
656-852 |
7.54e-41 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 150.93 E-value: 7.54e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 656 LEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALL 735
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 736 GKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRY 815
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 2124051152 816 EEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGA 852
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLL 197
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
724-907 |
1.28e-40 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 150.16 E-value: 1.28e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 724 LALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILA 803
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 804 EKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKY 883
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180
....*....|....*....|....
gi 2124051152 884 QLAIDCYNKALEYDPDNAATLYLQ 907
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALG 184
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
792-989 |
6.83e-40 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 148.23 E-value: 6.83e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 792 IELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYN 871
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 872 NKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFINNMMGNT 951
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190
....*....|....*....|....*....|....*...
gi 2124051152 952 EEAILCYDSALAIDPNSPSTLYNKRFALYNLKKLDEAE 989
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
690-922 |
3.15e-39 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 146.31 E-value: 3.15e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 690 LDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALR 769
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 770 NRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDF 849
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051152 850 EGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALN 922
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLAL 233
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
758-926 |
5.56e-39 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 145.53 E-value: 5.56e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 758 LDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIY 837
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 838 RQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSN 917
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
....*....
gi 2124051152 918 KAALNCFDR 926
Cdd:COG0457 161 EEALELLEK 169
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
177-348 |
1.81e-38 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 143.99 E-value: 1.81e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 177 IELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPDMVNAWH 256
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 257 KKGINLERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEAWYSKGSLLNKAGKY 336
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170
....*....|..
gi 2124051152 337 DAAIACFDKALN 348
Cdd:COG0457 161 EEALELLEKLEA 172
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
381-560 |
2.07e-38 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 143.99 E-value: 2.07e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 381 EFESPVVKIWYEKALSLDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYK 460
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 461 KGLDSSKIKDYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHA 540
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
|
170 180
....*....|....*....|
gi 2124051152 541 EASDCYNQTLQIDPDYSAAR 560
Cdd:COG0457 162 EALELLEKLEAAALAALLAA 181
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
632-862 |
2.28e-38 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 143.99 E-value: 2.28e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 632 WSGKAAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLG 711
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 712 RLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRI 791
Cdd:COG0457 91 RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKL 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2124051152 792 IELEPDNtqILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILEL 862
Cdd:COG0457 171 EAAALAA--LLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
735-989 |
3.39e-38 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 144.10 E-value: 3.39e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 735 LGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGR 814
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 815 YEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKAL 894
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 895 EYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFINNMMGNTEEAILCYDSALAIDPNSPSTLYN 974
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL 251
|
250
....*....|....*
gi 2124051152 975 KRFaLYNLKKLDEAE 989
Cdd:COG2956 252 ADL-LERKEGLEAAL 265
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
826-1009 |
5.22e-38 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 142.84 E-value: 5.22e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 826 LEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLY 905
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 906 LQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFINNMMGNTEEAILCYDSALAIDPNSPSTLYNKRFALYNLKKL 985
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180
....*....|....*....|....
gi 2124051152 986 DEAEVCKAKLDEIDPGFVDALQNK 1009
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALG 184
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
771-1001 |
1.12e-36 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 139.86 E-value: 1.12e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 771 RAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFE 850
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 851 GAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQL 930
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2124051152 931 KPDCITAWYNKGFINNMMGNTEEAILCYDSALAIDPNSPSTLYNKRFALYNLKKLDEAEVCKAKLDEIDPG 1001
Cdd:COG2956 174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS 244
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
414-567 |
2.49e-35 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 135.13 E-value: 2.49e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 414 LETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIKDYDSAVKSYDKALKIDKNYTLAWY 493
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 494 GKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDCYNQTLQIDPDYSAARFKLSENL 567
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
82-348 |
2.62e-35 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 136.01 E-value: 2.62e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 82 SLAWYGKGRSLAELGEYEEAINCYEKALSTFPVSSGSWSDKGDELFKLKKYVEAINCYDKSFAADTYVSTVWYQKALASE 161
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 162 KMGLDEETLASYNKSIELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCY 241
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 242 DKAISFNPDMVNAWHKKGINLERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSe 321
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD- 246
|
250 260
....*....|....*....|....*..
gi 2124051152 322 AWYSKGSLLNKAGKYDAAIACFDKALN 348
Cdd:COG2956 247 LLLALADLLERKEGLEAALALLERQLR 273
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
712-929 |
3.72e-35 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 143.60 E-value: 3.72e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 712 RLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRI 791
Cdd:COG3914 59 LLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRA 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 792 IELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYN 871
Cdd:COG3914 139 LALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS 218
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 872 NKGFALYKLEKYQLA--IDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQ 929
Cdd:COG3914 219 NLLFALRQACDWEVYdrFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLVA 278
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
313-544 |
3.71e-33 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 128.59 E-value: 3.71e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 313 LTYNPGNSEAWYSKGSLLNKAGKYDAAIACFDKALnpdtgiqveeiggelleklsvyeaslscysetpEFESPVVKIWYE 392
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKAL---------------------------------ELDPDDAEALYN 47
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 393 KALSLDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIKDYD 472
Cdd:COG0457 48 LGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYD 127
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2124051152 473 SAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASD 544
Cdd:COG0457 128 EAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLAL 199
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
245-506 |
4.08e-33 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 128.59 E-value: 4.08e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 245 ISFNPDMVNAWHKKGINLERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEAWY 324
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 325 SKGSLLNKAGKYDAAIACFDKAL--NPDtgiqveeiggelleklsvyeaslscysetpefespVVKIWYEKALSLDKLGK 402
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALelDPD-----------------------------------DAEALYNLGLALLELGR 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 403 YETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIKDYDSAVKSYDKAL 482
Cdd:COG0457 126 YDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
|
250 260
....*....|....*....|....
gi 2124051152 483 KIDKNYTLAWYGKAFALAKLGEYE 506
Cdd:COG0457 206 ALRKKLAILTLAALAELLLLALAL 229
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
860-1010 |
4.90e-33 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 128.59 E-value: 4.90e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 860 LELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWY 939
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2124051152 940 NKGFINNMMGNTEEAILCYDSALAIDPNSPSTLYNKRFALYNLKKLDEAEVCKAKLDEIDPGFVDALQNKG 1010
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
144-378 |
6.66e-33 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 128.20 E-value: 6.66e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 144 AADTYVSTVWYQKALASEKMGLDEETLASYNKSIELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQ 223
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 224 KGAILDKFGDYEAAVDCYDKAISFNPDMVNAWHKKGINLERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRID 303
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2124051152 304 EALKCYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIACFDKALNPDTGIQVEEIGGELLEKLSVYEASLSCYSE 378
Cdd:COG0457 162 EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLA 236
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
722-940 |
9.77e-33 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 135.89 E-value: 9.77e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 722 QVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQI 801
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 802 LAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLE 881
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2124051152 882 KYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYN 940
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSN 219
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
75-245 |
1.51e-32 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 127.05 E-value: 1.51e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 75 LDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPVSSGSWSDKGDELFKLKKYVEAINCYDKSFAADTYVSTVWY 154
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 155 QKALASEKMGLDEETLASYNKSIELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDY 234
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170
....*....|.
gi 2124051152 235 EAAVDCYDKAI 245
Cdd:COG0457 161 EEALELLEKLE 171
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
709-906 |
5.63e-32 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 133.58 E-value: 5.63e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 709 DLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDsepenhEALRNRAVALSKSNKSEDALADY 788
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLA------ALLELAALLLQALGRYEEALALY 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 789 DRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVD 868
Cdd:COG3914 102 RRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE 181
|
170 180 190
....*....|....*....|....*....|....*...
gi 2124051152 869 AYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYL 906
Cdd:COG3914 182 ALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSN 219
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
26-860 |
8.41e-32 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 134.44 E-value: 8.41e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 26 NENKGAKITPDLDEIISQRPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCY 105
Cdd:TIGR02917 171 AENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHA 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 106 EKALSTFPVSSGSWSDKGDELFKLKKYVEAINCYDKSFAADT-------YVSTVWYQ----------------------- 155
Cdd:TIGR02917 251 DALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPeylpallLAGASEYQlgnleqayqylnqilkyapnshq 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 156 --KALASE--KMGLDEETLASYNKSIELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKF 231
Cdd:TIGR02917 331 arRLLASIqlRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQ 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 232 GDYEAAVDCYDKAISFNPDMVNAWHKKGINLERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDE 311
Cdd:TIGR02917 411 GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 312 ILTYNPGNSEAWYSKGSLLNKAGKYDAAIACFDKALNPDTGiqveeiGGELLEKLsvyeASLSCYSETPEfespVVKIWY 391
Cdd:TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK------NLRAILAL----AGLYLRTGNEE----EAVAWL 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 392 EKALSLDK--------LGKY-------ETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAK 456
Cdd:TIGR02917 557 EKAAELNPqeiepalaLAQYylgkgqlKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 457 VWYKKGLDSSKIKDYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYnkvldavpdsadvwynkglvldel 536
Cdd:TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA------------------------ 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 537 gkhaeasdcynQTLQIDPDYSAARFKLsenLGQSsteasvsesvkyismdanpvqalsggfwsyllnhkYANSNDesels 616
Cdd:TIGR02917 693 -----------KSLQKQHPKAALGFEL---EGDL-----------------------------------YLRQKD----- 718
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 617 edlnffspefgydapwsgkaaiysklgmYEDALTCYDMVLEISPSSSDAWYQkGLIFERLDRNEKAVECYQKALDLDPQS 696
Cdd:TIGR02917 719 ----------------------------YPAAIQAYRKALKRAPSSQNAIKL-HRALLASGNTAEAVKTLEAWLKTHPND 769
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 697 STAWYGIAstvsdlgrleeaisyydqvlalnssnseallgkGIALAnLGRYEEAVSCYTTLLDSEPENHEALRNRAVALS 776
Cdd:TIGR02917 770 AVLRTALA---------------------------------ELYLA-QKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYL 815
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 777 KSNKSEdALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCY 856
Cdd:TIGR02917 816 ELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKEL 894
|
....
gi 2124051152 857 DRIL 860
Cdd:TIGR02917 895 DKLL 898
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
255-553 |
1.96e-31 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 124.84 E-value: 1.96e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 255 WHKKGINLERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEAWYSKGSLLNKAG 334
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 335 KYDAAIACFDKALNPDTgiqveeiggellEKLSVYEASLSCYSETpefespvvkiwyekalsldklGKYETAIECYDEVL 414
Cdd:COG2956 91 LLDRAEELLEKLLELDP------------DDAEALRLLAEIYEQE---------------------GDWEKAIEVLERLL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 415 ETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIKDYDSAVKSYDKALKIDKNYTLAWYG 494
Cdd:COG2956 138 KLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPR 217
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2124051152 495 KAFALAKLGEYESSLKCYNKVLDAVPDSaDVWYNKGLVLDELGKHAEASDCYNQTLQID 553
Cdd:COG2956 218 LAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
482-795 |
3.09e-31 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 123.19 E-value: 3.09e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 482 LKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDCYNQTLQIDPDYSAArf 561
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 562 klsenlgqssteasvsesvkyismdanpvqalsggfwsyllnhkyansndeselsedlnffspefgydapWSGKAAIYSK 641
Cdd:COG0457 79 ----------------------------------------------------------------------LNNLGLALQA 88
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 642 LGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYD 721
Cdd:COG0457 89 LGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE 168
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 722 QVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELE 795
Cdd:COG0457 169 KLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
765-998 |
4.38e-31 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 130.88 E-value: 4.38e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 765 HEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERML---------EISPDNTEI 835
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALaageaaaaaAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 836 IYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTIS 915
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 916 SNKAALNCFDRVVQLKPDCITAWYNKGFINNMMGNTEEAILCYDSALAIDPNSPSTLYNKRFALYNLKKLDEAEVCKAKL 995
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL 240
|
...
gi 2124051152 996 DEI 998
Cdd:COG3914 241 AAL 243
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
421-827 |
1.83e-30 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 121.76 E-value: 1.83e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 421 AVVWYMKGLDLDKLGRYKEAIECYDRALKLDsrhakvwykkgldsskikdydsavksydkalkidknytlawygkafala 500
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELD------------------------------------------------- 38
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 501 klgeyesslkcynkvldavPDSADVWYNKGLVLDELGKHAEASDCYNQTLQIDPDYSAARFKLsenlgqssteasvsesv 580
Cdd:COG2956 39 -------------------PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL----------------- 82
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 581 kyismdanpvqalsggfwsyllnhkyansndeselsedlnffspefgydapwsgkAAIYSKLGMYEDALTCYDMVLEISP 660
Cdd:COG2956 83 -------------------------------------------------------AQDYLKAGLLDRAEELLEKLLELDP 107
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 661 SSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIA 740
Cdd:COG2956 108 DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL 187
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 741 LANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAeKASLFEELGRYEEAAA 820
Cdd:COG2956 188 YLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLERKEGLEAALA 266
|
....*..
gi 2124051152 821 CYERMLE 827
Cdd:COG2956 267 LLERQLR 273
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
629-801 |
1.29e-29 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 126.26 E-value: 1.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 629 DAPWSGKAAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVS 708
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 709 DLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADY 788
Cdd:COG3914 158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFE 237
|
170
....*....|...
gi 2124051152 789 DRIIELEPDNTQI 801
Cdd:COG3914 238 ELLAALARGPSEL 250
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
41-237 |
1.48e-29 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 118.19 E-value: 1.48e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 41 ISQRPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPVSSGSWS 120
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 121 DKGDELFKLKKYVEAINCYDKSFAADTYVSTVWYQKALASEKMGLDEETLASYNKSIELNSNSSRSLQMQGTAYIGLEQY 200
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 2124051152 201 KEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAA 237
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLL 197
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
627-835 |
1.97e-29 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 125.49 E-value: 1.97e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 627 GYDAPWSGKAAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIAST 706
Cdd:COG3914 42 GLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 707 VSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALA 786
Cdd:COG3914 122 LLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIA 201
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2124051152 787 DYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEI 835
Cdd:COG3914 202 AYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSEL 250
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
323-565 |
7.90e-29 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 117.14 E-value: 7.90e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 323 WYSKGSLLNKAGKYDAAIACFDKALNPDtgiqveeiggelleklsvyeaslscySETPEfespvvkIWYEKALSLDKLGK 402
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELD--------------------------PETVE-------AHLALGNLYRRRGE 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 403 YETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIKDYDSAVKSYDKAL 482
Cdd:COG2956 58 YDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 483 KIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDCYNQTLQIDPDYSAARFK 562
Cdd:COG2956 138 KLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPR 217
|
...
gi 2124051152 563 LSE 565
Cdd:COG2956 218 LAE 220
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
665-863 |
1.42e-28 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 122.79 E-value: 1.42e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 665 AWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYgiastvSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANL 744
Cdd:COG3914 52 AEAAAAALLALAAGEAAAAAAALLLLAALLELAALLL------QALGRYEEALALYRRALALNPDNAEALFNLGNLLLAL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 745 GRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYER 824
Cdd:COG3914 126 GRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205
|
170 180 190
....*....|....*....|....*....|....*....
gi 2124051152 825 MLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELN 863
Cdd:COG3914 206 ALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
766-900 |
2.84e-28 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 111.05 E-value: 2.84e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 766 EALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALER 845
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2124051152 846 NGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDN 900
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
187-350 |
8.05e-28 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 120.48 E-value: 8.05e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 187 LQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPDMVNAWHKKGINLERVG 266
Cdd:COG3914 47 LLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 267 AYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIACFDKA 346
Cdd:COG3914 127 RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206
|
....*.
gi 2124051152 347 --LNPD 350
Cdd:COG3914 207 leLDPD 212
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
804-1006 |
2.73e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 112.52 E-value: 2.73e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 804 EKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKY 883
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 884 QLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFINNMMGNTEEAILCYDSALA 963
Cdd:COG2956 93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALK 172
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2124051152 964 IDPNSPSTLYNKRFALYNLKKLDEAEVCKAKLDEIDPGFVDAL 1006
Cdd:COG2956 173 LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAL 215
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
187-339 |
2.76e-27 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 118.94 E-value: 2.76e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 187 LQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPDMVNAWHKKGINLERVG 266
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051152 267 AYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEAWYSKGSLLNKAGKYDAA 339
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
664-798 |
1.51e-25 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 103.35 E-value: 1.51e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 664 DAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALAN 743
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2124051152 744 LGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDN 798
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
636-1008 |
1.55e-25 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 114.03 E-value: 1.55e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 636 AAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVS-DLGRLE 714
Cdd:TIGR02917 63 GKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYlGLGQLE 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 715 EAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIEL 794
Cdd:TIGR02917 143 LAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 795 EPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKG 874
Cdd:TIGR02917 223 RPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAG 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 875 FALYKLEKYQLAIDCYNKALEYDP----------------------------------DNAATLYLQGCAYLTISSNKAA 920
Cdd:TIGR02917 303 ASEYQLGNLEQAYQYLNQILKYAPnshqarrllasiqlrlgrvdeaiatlspalgldpDDPAALSLLGEAYLALGDFEKA 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 921 LNCFDRVVQLKPDCITAWYNKGFINNMMGNTEEAI---------------------LCY------DSALAI-------DP 966
Cdd:TIGR02917 383 AEYLAKATELDPENAAARTQLGISKLSQGDPSEAIadletaaqldpelgradllliLSYlrsgqfDKALAAakklekkQP 462
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 2124051152 967 NSPSTlYNKRFALY-NLKKLDEAEVCKAKLDEIDPGFVDALQN 1008
Cdd:TIGR02917 463 DNASL-HNLLGAIYlGKGDLAKAREAFEKALSIEPDFFPAAAN 504
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
728-866 |
2.09e-25 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 102.96 E-value: 2.09e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 728 SSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKAS 807
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2124051152 808 LFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGD 866
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
783-907 |
3.20e-25 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 102.01 E-value: 3.20e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 783 DALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILEL 862
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2124051152 863 NPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQ 907
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLE 125
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
390-601 |
3.55e-25 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 112.39 E-value: 3.55e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 390 WYEKALSLDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIK 469
Cdd:COG3914 47 LLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 470 DYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDCYNQT 549
Cdd:COG3914 127 RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2124051152 550 LQIDPDYSAARFKLSENLGQSSTEASVSESVKYISMDANPVQALSGGFWSYL 601
Cdd:COG3914 207 LELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLYL 258
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
699-832 |
3.99e-25 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 101.81 E-value: 3.99e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 699 AWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKS 778
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 779 NKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDN 832
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
740-963 |
5.57e-25 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 104.61 E-value: 5.57e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 740 ALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIE------LEPDNTQILAEKASLFEELG 813
Cdd:COG4785 8 LLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAEridralALPDLAQLYYERGVAYDSLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 814 RYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKA 893
Cdd:COG4785 88 DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 894 LEYDPDNAATLYLQGCAYLTISSNKAalncfdrvvqlKPDCITAWynkGFINNMMGNTEEAILCYDSALA 963
Cdd:COG4785 168 LELDPNDPERALWLYLAERKLDPEKA-----------LALLLEDW---ATAYLLQGDTEEARELFKLALA 223
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
83-321 |
3.95e-24 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 108.93 E-value: 3.95e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 83 LAWYGKGRSLAELGEYEEAINCYEKALSTFPVSSGSWSDKGDELFKLKKYVEAINCYDKSFAADTY---------VSTVW 153
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAaaaaaalllLAALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 154 YQKALASEKMGLDEETLASYNKSIELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGD 233
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 234 YEAAVDCYDKAISFNPDMVNAWHKKGINLERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEIL 313
Cdd:COG3914 162 LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLA 241
|
....*...
gi 2124051152 314 TYNPGNSE 321
Cdd:COG3914 242 ALARGPSE 249
|
|
| MamA |
NF040959 |
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ... |
705-897 |
4.60e-24 |
|
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.
Pssm-ID: 468889 [Multi-domain] Cd Length: 204 Bit Score: 101.30 E-value: 4.60e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 705 STVSDLGR-LEEAISYYDQVLALNSSNSEAL-LGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSE 782
Cdd:NF040959 9 SFLLVSGRiLNNMVNGYNRLFSLSDRDRAKMyRNKGISHAKKGRYDKAVRYLEQVARIDPDDVEALYRLGVAYLKTGQYD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 783 DALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILEL 862
Cdd:NF040959 89 RAIKVLEKVLSLAPDHVKAAYRKGVALLKIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALEL 168
|
170 180 190
....*....|....*....|....*....|....*
gi 2124051152 863 NPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYD 897
Cdd:NF040959 169 DPNEIKYHQAIGFMYVQKGDHETAAEHFKKAMELE 203
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
800-1008 |
4.67e-24 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 108.54 E-value: 4.67e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 800 QILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNG---------DFEGAIGCYDRILELNPGDVDAY 870
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAalaeaaaaaLLALAAGEAAAAAAALLLLAALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 871 NNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFINNMMGN 950
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 951 TEEAILCYDSALAIDPNSPSTLYNKRFALYNLKKLDEAEVCKAKLDEIDPGFVDALQN 1008
Cdd:COG3914 162 LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSN 219
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
715-834 |
9.72e-24 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 97.77 E-value: 9.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 715 EAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIEL 794
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2124051152 795 EPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTE 834
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
647-767 |
1.32e-23 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 97.38 E-value: 1.32e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 647 DALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLAL 726
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2124051152 727 NSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEA 767
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
421-556 |
4.06e-23 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 96.41 E-value: 4.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 421 AVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIKDYDSAVKSYDKALKIDKNYTLAWYGKAFALA 500
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2124051152 501 KLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDCYNQTLQIDPDY 556
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
636-764 |
5.48e-23 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 96.03 E-value: 5.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 636 AAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEE 715
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2124051152 716 AISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPEN 764
Cdd:COG4783 91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
749-870 |
6.07e-23 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 95.46 E-value: 6.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 749 EAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEI 828
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2124051152 829 SPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAY 870
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
388-528 |
1.68e-22 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 103.92 E-value: 1.68e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 388 KIWYEKALSLDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSK 467
Cdd:COG3914 79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2124051152 468 IKDYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYN 528
Cdd:COG3914 159 LGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSN 219
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
800-933 |
2.37e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 94.10 E-value: 2.37e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 800 QILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYK 879
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 880 LEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPD 933
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
254-506 |
3.57e-22 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 102.76 E-value: 3.57e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 254 AWHKKGINLERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYD---------EILTYNPGNSEAWY 324
Cdd:COG3914 3 AAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALlalaageaaAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 325 SKGSLLNKAGKYDAAIACFDKAL--NPDTgiqveeiggelleklsvyeaslscysetpefespvVKIWYEKALSLDKLGK 402
Cdd:COG3914 83 LAALLLQALGRYEEALALYRRALalNPDN-----------------------------------AEALFNLGNLLLALGR 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 403 YETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIKDYDSAVKSYDKAL 482
Cdd:COG3914 128 LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207
|
250 260
....*....|....*....|....
gi 2124051152 483 KIDKNYTLAWYGKAFALAKLGEYE 506
Cdd:COG3914 208 ELDPDNADAHSNLLFALRQACDWE 231
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
35-237 |
8.99e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 95.84 E-value: 8.99e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 35 PDLDEIISQRPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPV 114
Cdd:COG0457 29 EDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 115 SSGSWSDKGDELFKLKKYVEAINCYDKSFAADTYVSTVWYQKALASEKMGLDEETLASYNKSIELNSNSSRSLQMQGTAY 194
Cdd:COG0457 109 DAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAAL 188
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2124051152 195 IGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAA 237
Cdd:COG0457 189 ALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLL 231
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
834-968 |
9.45e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 92.18 E-value: 9.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 834 EIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLT 913
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2124051152 914 ISSNKAALNCFDRVVQLKPDCITAWYNKGFINNMMGNTEEAILCYDSALAIDPNS 968
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
681-808 |
1.45e-21 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 91.61 E-value: 1.45e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 681 KAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDS 760
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2124051152 761 EPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASL 808
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
193-426 |
1.89e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 100.45 E-value: 1.89e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 193 AYIGLEQYKEAMEAFDRALNITPDNSE---------LWYQKGAILDKFGDYEAAVDCYDKAISFNPDMVNAWHKKGINLE 263
Cdd:COG3914 10 AALAAAALLAAAAAAELALAAELEAAAlaaalglalLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 264 RVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIACF 343
Cdd:COG3914 90 ALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 344 DKALNPDtgiqveeiggelleklsvyeaslscysetPEFespvVKIWYEKALSLDKLGKYETAIECYDEVLETEPGHAVV 423
Cdd:COG3914 170 RRALELD-----------------------------PDN----AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
|
...
gi 2124051152 424 WYM 426
Cdd:COG3914 217 HSN 219
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
181-319 |
6.95e-21 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 89.87 E-value: 6.95e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 181 SNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPDMVNAWHKKGI 260
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2124051152 261 NLERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGN 319
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
390-522 |
1.20e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 89.10 E-value: 1.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 390 WYEKALSLDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIK 469
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2124051152 470 DYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDS 522
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
817-933 |
1.34e-20 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 88.91 E-value: 1.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 817 EAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEY 896
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 2124051152 897 DPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPD 933
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
219-347 |
1.62e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 88.71 E-value: 1.62e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 219 ELWYQKGAILDKFGDYEAAVDCYDKAISFNPDMVNAWHKKGINLERVGAYEEALACYDFVLLSEPENLDALQGKGLCLEN 298
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2124051152 299 LGRIDEALKCYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIACFDKAL 347
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
852-969 |
7.13e-20 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 86.60 E-value: 7.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 852 AIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLK 931
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....*...
gi 2124051152 932 PDCITAWYNKGFINNMMGNTEEAILCYDSALAIDPNSP 969
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
406-524 |
2.82e-19 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 85.06 E-value: 2.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 406 AIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIKDYDSAVKSYDKALKID 485
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....*....
gi 2124051152 486 KNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSAD 524
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
152-285 |
5.23e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 84.47 E-value: 5.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 152 VWYQKALASEKMGLDEETLASYNKSIELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKF 231
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 232 GDYEAAVDCYDKAISFNPDMVNAWHKKGINLERVGAYEEALACYDFVLLSEPEN 285
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
36-237 |
5.60e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 92.36 E-value: 5.60e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 36 DLDEIISQRPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPvs 115
Cdd:COG3914 66 EAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNP-- 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 116 sgswsdkgdelfklkKYVEAincydksfaadtyvstvWYQKALASEKMGLDEETLASYNKSIELNSNSSRSLQMQGTAYI 195
Cdd:COG3914 144 ---------------DFAEA-----------------YLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQ 191
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2124051152 196 GLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAA 237
Cdd:COG3914 192 DLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
73-256 |
7.02e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 92.36 E-value: 7.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 73 DALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPVSSGSWSDKGDELFKLKKYVEAINCYdksfaadtyvstv 152
Cdd:COG3914 69 AAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAAL------------- 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 153 wyQKALAsekmgLDEETLASYNksielnsNSSRSLQMQGtayigleQYKEAMEAFDRALNITPDNSELWYQKGAILDKFG 232
Cdd:COG3914 136 --RRALA-----LNPDFAEAYL-------NLGEALRRLG-------RLEEAIAALRRALELDPDNAEALNNLGNALQDLG 194
|
170 180
....*....|....*....|....
gi 2124051152 233 DYEAAVDCYDKAISFNPDMVNAWH 256
Cdd:COG3914 195 RLEEAIAAYRRALELDPDNADAHS 218
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
202-333 |
1.12e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 83.13 E-value: 1.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 202 EAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPDMVNAWHKKGINLERVGAYEEALACYDFVLLS 281
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2124051152 282 EPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEaWYSKGSLLNKA 333
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP-ARLLEASIAEA 131
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
439-560 |
1.54e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 82.75 E-value: 1.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 439 EAIECYDRALKLDSRHAKVWYKKGLDSSKIKDYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDA 518
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2124051152 519 VPDSADVWYNKGLVLDELGKHAEASDCYNQTLQIDPDYSAAR 560
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
811-983 |
1.93e-18 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 85.35 E-value: 1.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 811 ELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILE------LNPGDVDAYNNKGFALYKLEKYQ 884
Cdd:COG4785 11 ALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAEridralALPDLAQLYYERGVAYDSLGDYD 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 885 LAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFINNMMGNTEEAILCYDSALAI 964
Cdd:COG4785 91 LAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALEL 170
|
170
....*....|....*....
gi 2124051152 965 DPNSPSTLYNKRFALYNLK 983
Cdd:COG4785 171 DPNDPERALWLYLAERKLD 189
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
632-742 |
1.98e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 82.36 E-value: 1.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 632 WSGKAAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLG 711
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
|
90 100 110
....*....|....*....|....*....|..
gi 2124051152 712 RLEEAISYYDQVLALNSSNSE-ALLGKGIALA 742
Cdd:COG4235 100 DYAEAIAAWQKLLALLPADAPaRLLEASIAEA 131
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
403-569 |
2.31e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 90.44 E-value: 2.31e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 403 YETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDS---------SKIKDYDS 473
Cdd:COG3914 17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAllelaalllQALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 474 AVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDCYNQTLQID 553
Cdd:COG3914 97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
|
170
....*....|....*.
gi 2124051152 554 PDYSAARFklseNLGQ 569
Cdd:COG3914 177 PDNAEALN----NLGN 188
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
757-898 |
6.08e-18 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 81.93 E-value: 6.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 757 LLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEII 836
Cdd:COG5010 12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELY 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2124051152 837 YRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDP 898
Cdd:COG5010 92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
284-454 |
6.80e-18 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 81.39 E-value: 6.80e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 284 ENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIACFDKAL--NPDtgiqveeigge 361
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALelDPD----------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 362 lleklsvyeaslscysetpEFEspvvkIWYEKALSLDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAI 441
Cdd:COG4783 71 -------------------EPE-----ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAI 126
|
170
....*....|...
gi 2124051152 442 ECYDRALKLDSRH 454
Cdd:COG4783 127 AALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
168-290 |
8.56e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 80.82 E-value: 8.56e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 168 ETLASYNKSIELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISF 247
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2124051152 248 NPDMVNAWHKKGINLERVGAYEEALACYDFVLLSEPENLDALQ 290
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
236-348 |
1.72e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 79.66 E-value: 1.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 236 AAVDCYDKAISFNPDMVNAWHKKGINLERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTY 315
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|...
gi 2124051152 316 NPGNSEAWYSKGSLLNKAGKYDAAIACFDKALN 348
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
865-1002 |
7.01e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 78.31 E-value: 7.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 865 GDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFI 944
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 945 NNMMGNTEEAILCYDSALAIDPNSPSTLYNKRFALYNLKKLDEAEVCKAKLDEIDPGF 1002
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
808-899 |
1.98e-16 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 75.59 E-value: 1.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 808 LFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGcYDRILELNPGDVDAYNNKGFALYKLEKYQLAI 887
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2124051152 888 DCYNKALEYDPD 899
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
46-183 |
2.09e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.15 E-value: 2.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 46 ASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPVSSGSWSDKGDE 125
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 126 LFKLKKYVEAINCYDKSFAADTYVSTVWYQKALASEKMGLDEETLASYNKSIELNSNS 183
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
652-853 |
2.42e-16 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 79.19 E-value: 2.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 652 YDMVLEISPSSSDAWYQKGLIFERLDRNEKAVEcyqkaldLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLAlNSSNS 731
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAV-------LALAIALADLALALAAAALAAAALAAERIDRALA-LPDLA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 732 EALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEE 811
Cdd:COG4785 74 QLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2124051152 812 LGRYEEAAACYERMLEISPDNTEIIYRQGKAlERNGDFEGAI 853
Cdd:COG4785 154 LGRYELAIADLEKALELDPNDPERALWLYLA-ERKLDPEKAL 194
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
84-251 |
3.71e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 76.38 E-value: 3.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 84 AWYGKGRSLAELGEYEEAINCYEKALSTFPVSSGSWSDKGDELFKLKKYVEAIncydksfaadtyvstVWYQKALasekm 163
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAI---------------VLLHEAL----- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 164 gldeetlasynksiELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDK 243
Cdd:COG4783 66 --------------ELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
|
....*...
gi 2124051152 244 AISFNPDM 251
Cdd:COG4783 132 ALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
452-565 |
1.23e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.84 E-value: 1.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 452 SRHAKVWYKKGLDSSKIKDYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGL 531
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110
....*....|....*....|....*....|....
gi 2124051152 532 VLDELGKHAEASDCYNQTLQIDPDYSAARFKLSE 565
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLAR 114
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
842-933 |
1.40e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 73.28 E-value: 1.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 842 ALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDcYNKALEYDPDNAATLYLQGCAYLTISSNKAAL 921
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2124051152 922 NCFDRVVQLKPD 933
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
157-341 |
1.43e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 77.26 E-value: 1.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 157 ALASEKMGLDEETLASYNKSIELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALnITPDNSELWYQKGAILDKFGDYEA 236
Cdd:COG4785 13 ALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYERGVAYDSLGDYDL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 237 AVDCYDKAISFNPDMVNAWHKKGINLERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYN 316
Cdd:COG4785 92 AIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELD 171
|
170 180
....*....|....*....|....*
gi 2124051152 317 PGNSEAWYSKGsLLNKAGKYDAAIA 341
Cdd:COG4785 172 PNDPERALWLY-LAERKLDPEKALA 195
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
632-730 |
1.73e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.46 E-value: 1.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 632 WSGKAAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLG 711
Cdd:COG4783 41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120
|
90
....*....|....*....
gi 2124051152 712 RLEEAISYYDQVLALNSSN 730
Cdd:COG4783 121 RPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
321-488 |
1.78e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.46 E-value: 1.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 321 EAWYSKGSLLNKAGKYDAAIACFDKALNPDtgiqveeiggelleklsvyeaslscysetPEFespvVKIWYEKALSLDKL 400
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELD-----------------------------PDN----PEAFALLGEILLQL 51
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 401 GKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIKDYDSAVKSYDK 480
Cdd:COG4783 52 GDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
|
....*...
gi 2124051152 481 ALKIDKNY 488
Cdd:COG4783 132 ALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
304-455 |
2.06e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 73.89 E-value: 2.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 304 EALKCYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIACFDKA--LNPDTgiqveeiggelleklsvyeaslscysetpe 381
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKAlrLDPDN------------------------------ 50
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 382 fespvVKIWYEKALSLDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHA 455
Cdd:COG4235 51 -----ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
391-540 |
2.07e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 76.49 E-value: 2.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 391 YEKALSLDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIKD 470
Cdd:COG4785 43 DLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGD 122
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 471 YDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHA 540
Cdd:COG4785 123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEK 192
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
689-830 |
2.61e-15 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 74.61 E-value: 2.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 689 ALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEAL 768
Cdd:COG5010 12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELY 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2124051152 769 RNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISP 830
Cdd:COG5010 92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
425-555 |
4.51e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 75.72 E-value: 4.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 425 YMKGLDLDKLGRYKEAIECYDRALKLDsRHAKVWYKKGLDSSKIKDYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGE 504
Cdd:COG4785 44 LALALAAAALAAAALAAERIDRALALP-DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGD 122
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2124051152 505 YESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDCYNQTLQIDPD 555
Cdd:COG4785 123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPN 173
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
638-729 |
8.59e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 70.97 E-value: 8.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 638 IYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVEcYQKALDLDPQSSTAWYGIASTVSDLGRLEEAI 717
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2124051152 718 SYYDQVLALNSS 729
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
672-766 |
1.29e-14 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 70.58 E-value: 1.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 672 IFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISyYDQVLALNSSNSEALLGKGIALANLGRYEEAV 751
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....*
gi 2124051152 752 SCYTTLLDSEPENHE 766
Cdd:COG3063 80 AYLERALELDPSALR 94
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
783-932 |
1.37e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 72.30 E-value: 1.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 783 DALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILEL 862
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 863 NPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKP 932
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
390-485 |
2.26e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 70.81 E-value: 2.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 390 WYEKALSLDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIK 469
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
|
90
....*....|....*.
gi 2124051152 470 DYDSAVKSYDKALKID 485
Cdd:COG4235 100 DYAEAIAAWQKLLALL 115
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
712-864 |
3.20e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 71.53 E-value: 3.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 712 RLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRI 791
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051152 792 IELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNP 864
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
740-831 |
3.56e-14 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 69.04 E-value: 3.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 740 ALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALAdYDRIIELEPDNTQILAEKASLFEELGRYEEAA 819
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2124051152 820 ACYERMLEISPD 831
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
469-862 |
3.62e-14 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 76.95 E-value: 3.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 469 KDYDSAVKSYDKALKIdKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDCYNQ 548
Cdd:TIGR00990 141 KDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTA 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 549 TLQIDPDYSAARFKLSENLGQSSTEASVSESVKYISMDANPVQALSGGFWSYLLNHKYANSNDESELSEDLNFFSPEFGY 628
Cdd:TIGR00990 220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 629 DAPWSGKAAIYSKLG-MYEDALTCYDMvleiSPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTV 707
Cdd:TIGR00990 300 KSPESKADESYEEAArAFEKALDLGKL----GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMN 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 708 SDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPEN----------------------- 764
Cdd:TIGR00990 376 LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFifshiqlgvtqykegsiassmat 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 765 -HEALRN----------RAVALSKSNKSEDALADYDRIIELEPD------NTQILAEKA-SLFEELGRYEEAAACYERML 826
Cdd:TIGR00990 456 fRRCKKNfpeapdvynyYGELLLDQNKFDEAIEKFDTAIELEKEtkpmymNVLPLINKAlALFQWKQDFIEAENLCEKAL 535
|
410 420 430
....*....|....*....|....*....|....*.
gi 2124051152 827 EISPDNTEIIYRQGKALERNGDFEGAIGCYDRILEL 862
Cdd:TIGR00990 536 IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
637-727 |
5.49e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 70.76 E-value: 5.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 637 AIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEA 716
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141
|
90
....*....|.
gi 2124051152 717 ISYYDQVLALN 727
Cdd:COG5010 142 KAALQRALGTS 152
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
665-762 |
5.76e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 70.76 E-value: 5.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 665 AWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANL 744
Cdd:COG5010 56 IESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
90
....*....|....*...
gi 2124051152 745 GRYEEAVSCYTTLLDSEP 762
Cdd:COG5010 136 GQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
193-287 |
7.39e-14 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 68.27 E-value: 7.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 193 AYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDcYDKAISFNPDMVNAWHKKGINLERVGAYEEAL 272
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....*
gi 2124051152 273 ACYDFVLLSEPENLD 287
Cdd:COG3063 80 AYLERALELDPSALR 94
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
467-555 |
8.72e-14 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 67.89 E-value: 8.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 467 KIKDYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKcYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDCY 546
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
....*....
gi 2124051152 547 NQTLQIDPD 555
Cdd:COG3063 83 ERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
134-250 |
9.03e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 69.26 E-value: 9.03e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 134 EAINCYDKSFAADTYVSTVWYQKALASEKMGLDEETLASYNKSIELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNI 213
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 2124051152 214 TPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPD 250
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
185-283 |
1.20e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 69.60 E-value: 1.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 185 RSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPDMVNAWHKKGINLER 264
Cdd:COG5010 55 AIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134
|
90
....*....|....*....
gi 2124051152 265 VGAYEEALACYDFVLLSEP 283
Cdd:COG5010 135 LGQDDEAKAALQRALGTSP 153
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
628-878 |
1.76e-13 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 75.12 E-value: 1.76e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 628 YDAPWSGKAAIYSklGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTA-------- 699
Cdd:PRK11447 270 FRARAQGLAAVDS--GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRdkwesllk 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 700 ----WYGIASTVSDL--GRLEEAISYYDQVLALNSSNSEALLGKG-IALANlGRYEEAVSCYTTLLDSEPENHEALR--- 769
Cdd:PRK11447 348 vnryWLLIQQGDAALkaNNLAQAERLYQQARQVDNTDSYAVLGLGdVAMAR-KDYAAAERYYQQALRMDPGNTNAVRgla 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 770 --------NRAVA----LSKSNKSedALADYDRIIELEpdntqILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIY 837
Cdd:PRK11447 427 nlyrqqspEKALAfiasLSASQRR--SIDDIERSLQND-----RLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY 499
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2124051152 838 RQGKALERNGDFEGAIGCYDRILELNPGD---VDAYnnkgfALY 878
Cdd:PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPNDpeqVYAY-----GLY 538
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
636-774 |
2.19e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 70.71 E-value: 2.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 636 AAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEE 715
Cdd:COG4785 80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2124051152 716 AISYYDQVLALNSSNSEALLGKGIALANLgRYEEAVSCYTT------LLDSEPENHEALRNRAVA 774
Cdd:COG4785 160 AIADLEKALELDPNDPERALWLYLAERKL-DPEKALALLLEdwatayLLQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
19-146 |
2.33e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 68.29 E-value: 2.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 19 QGLVVEGNENKGAKItpdLDEIISQRPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEY 98
Cdd:COG4783 12 QALLLAGDYDEAEAL---LEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2124051152 99 EEAINCYEKALSTFPVSSGSWSDKGDELFKLKKYVEAINCYDKSFAAD 146
Cdd:COG4783 89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
825-1011 |
3.36e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.87 E-value: 3.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 825 MLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATL 904
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 905 YLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFINNMMGNTEEAILCYDSALAIDPNSPSTLYNKRFALYNLKK 984
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161
|
170 180
....*....|....*....|....*..
gi 2124051152 985 LDEAEVCKAKLDEIDPGFVDALQNKGT 1011
Cdd:COG3914 162 LEEAIAALRRALELDPDNAEALNNLGN 188
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
159-553 |
3.70e-13 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 73.86 E-value: 3.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 159 ASEKMGLDEETLAsyNKSIELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDnsELWY-QKGAILDKFGDYEAA 237
Cdd:TIGR00990 104 ADELPEIDESSVA--NLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--PVYYsNRAACHNALGDWEKV 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 238 VDCYDKAISFNPDMVNAWHKKGINLERVGAYEEALacYDFVLLSEPENLDALQGKGLCLENLGRidEALKCYDEILTYNP 317
Cdd:TIGR00990 180 VEDTTAALELDPDYSKALNRRANAYDGLGKYADAL--LDLTASCIIDGFRNEQSAQAVERLLKK--FAESKAKEILETKP 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 318 GNSEAWYSKGSLLnKAGKYDAAIACFDKALNPDtgiqvEEIGGELLEKlsvYEASLSCYSETPEFESPVVkiwYEKALSL 397
Cdd:TIGR00990 256 ENLPSVTFVGNYL-QSFRPKPRPAGLEDSNELD-----EETGNGQLQL---GLKSPESKADESYEEAARA---FEKALDL 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 398 DKLGKYET------------------AIECYDEVLETEPGHAVVW-YMKGLDLDkLGRYKEAIECYDRALKLDSRHAKVW 458
Cdd:TIGR00990 324 GKLGEKEAialnlrgtfkclkgkhleALADLSKSIELDPRVTQSYiKRASMNLE-LGDPDKAEEDFDKALKLNSEDPDIY 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 459 YKKGLDSSKIKDYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGK 538
Cdd:TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK 482
|
410
....*....|....*
gi 2124051152 539 HAEASDCYNQTLQID 553
Cdd:TIGR00990 483 FDEAIEKFDTAIELE 497
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
68-227 |
4.21e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 67.34 E-value: 4.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 68 IDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPVSSGSWSDKGDELFKLKKYVEAINcydksfaadt 147
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEE---------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 148 yvstvWYQKALAsekmgldeetlasynksieLNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAI 227
Cdd:COG4235 73 -----LLERALA-------------------LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
431-520 |
5.38e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 67.68 E-value: 5.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 431 LDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIKDYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLK 510
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
90
....*....|
gi 2124051152 511 CYNKVLDAVP 520
Cdd:COG5010 144 ALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
397-485 |
1.12e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 64.81 E-value: 1.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 397 LDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIEcYDRALKLDSRHAKVWYKKGLDSSKIKDYDSAVK 476
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
....*....
gi 2124051152 477 SYDKALKID 485
Cdd:COG3063 81 YLERALELD 89
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
876-966 |
1.15e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.91 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 876 ALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFINNMMGNTEEAI 955
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|.
gi 2124051152 956 LCYDSALAIDP 966
Cdd:COG5010 143 AALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
37-141 |
1.25e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 65.80 E-value: 1.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 37 LDEIISQRPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPVSS 116
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100
....*....|....*....|....*
gi 2124051152 117 GSWSDKGDELFKLKKYVEAINCYDK 141
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQK 110
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
395-486 |
1.69e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.52 E-value: 1.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 395 LSLDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIKDYDSA 474
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141
|
90
....*....|..
gi 2124051152 475 VKSYDKALKIDK 486
Cdd:COG5010 142 KAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
469-554 |
1.96e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.14 E-value: 1.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 469 KDYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDCYNQ 548
Cdd:COG5010 68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
....*.
gi 2124051152 549 TLQIDP 554
Cdd:COG5010 148 ALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
262-347 |
4.09e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 63.27 E-value: 4.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 262 LERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKcYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIA 341
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
....*.
gi 2124051152 342 CFDKAL 347
Cdd:COG3063 81 YLERAL 86
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
388-492 |
4.84e-12 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 66.86 E-value: 4.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 388 KIWYEKALSLDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSK 467
Cdd:COG4785 74 QLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153
|
90 100
....*....|....*....|....*..
gi 2124051152 468 IKDYDSAVKSYDKALKIDKN--YTLAW 492
Cdd:COG4785 154 LGRYELAIADLEKALELDPNdpERALW 180
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
193-317 |
9.21e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 64.21 E-value: 9.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 193 AYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPDMVNAWHKKGINLERVGAYEEAL 272
Cdd:COG5010 29 AALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAK 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2124051152 273 ACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNP 317
Cdd:COG5010 109 EYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
474-569 |
1.46e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 62.72 E-value: 1.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 474 AVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDCYNQTLQID 553
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90
....*....|....*.
gi 2124051152 554 PDYSAARFKLSENLGQ 569
Cdd:COG4235 82 PDNPEALYLLGLAAFQ 97
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
227-317 |
2.43e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.95 E-value: 2.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 227 ILDKFGDYEAAVDCYDKAISFNPDMVNAWHKKGINLERVGAYEEALAcYDFVLLSEPENLDALQGKGLCLENLGRIDEAL 306
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 2124051152 307 KCYDEILTYNP 317
Cdd:COG3063 80 AYLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
262-350 |
2.84e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.06 E-value: 2.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 262 LERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIA 341
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
....*....
gi 2124051152 342 CFDKALNPD 350
Cdd:COG5010 144 ALQRALGTS 152
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
901-1010 |
7.75e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.98 E-value: 7.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 901 AATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFINNMMGNTEEAILCYDSALAIDPNSPSTLYNKRFALY 980
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110
....*....|....*....|....*....|
gi 2124051152 981 NLKKLDEAEVCKAKLDEIDPGFVDALQNKG 1010
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLA 113
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
57-146 |
8.63e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.41 E-value: 8.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 57 ALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINcYEKALSTFPVSSGSWSDKGDELFKLKKYVEAI 136
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|
gi 2124051152 137 NCYDKSFAAD 146
Cdd:COG3063 80 AYLERALELD 89
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
869-1000 |
1.46e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 60.74 E-value: 1.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 869 AYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFINNMM 948
Cdd:COG5010 22 TLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2124051152 949 GNTEEAILCYDSALAIDPNSPSTLYNKRFALYNLKKLDEAEVCKAKLDEIDP 1000
Cdd:COG5010 102 GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
873-1014 |
1.71e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.21 E-value: 1.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 873 KGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFINNMMGNTE 952
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2124051152 953 EAILCYDSALAIDPNSPSTLYNKRFALYNLKKLDEAEVCKAKLDEIDPGFVDALQNKGTRFF 1014
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYL 155
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
57-146 |
2.08e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 60.36 E-value: 2.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 57 ALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPVSSGSWSDKGDELFKLKKYVEAI 136
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|
gi 2124051152 137 NCYDKSFAAD 146
Cdd:COG5010 143 AALQRALGTS 152
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
919-1014 |
7.34e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.09 E-value: 7.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 919 AALNCFDRVVQLKPDCITAWYNKGFINNMMGNTEEAILCYDSALAIDPNSPSTLYNKRFALYNLKKLDEAEVCKAKLDEI 998
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90
....*....|....*.
gi 2124051152 999 DPGFVDALQNKGTRFF 1014
Cdd:COG4235 81 DPDNPEALYLLGLAAF 96
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
910-1000 |
7.89e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.72 E-value: 7.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 910 AYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFINNMMGNTEEAILcYDSALAIDPNSPSTLYNKRFALYNLKKLDEAE 989
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 2124051152 990 VCKAKLDEIDP 1000
Cdd:COG3063 80 AYLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
153-249 |
7.89e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.82 E-value: 7.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 153 WYQKALASEKMGLDEETLASYNKSIELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFG 232
Cdd:COG5010 57 ESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG 136
|
90
....*....|....*..
gi 2124051152 233 DYEAAVDCYDKAISFNP 249
Cdd:COG5010 137 QDDEAKAALQRALGTSP 153
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
190-450 |
1.11e-09 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 61.11 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 190 QGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPDmvnAWHKKGINLERVGAYE 269
Cdd:cd24142 6 KAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD---GGYEKYLYLGQLSGGE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 270 EALACYDF---VLLSEPENLDALQGKG-------------------------LCLEnlgriDEA----LKCYDEILTYNP 317
Cdd:cd24142 83 EALQYYEKgieILEEELQALQAASAEAeeeaeelkrklssalcalaeiymtdLCDE-----PDAeqrcEELITKALELDP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 318 GNSEAWYSKGSLLNKAGKYDAAIACFDKALNpdtgiQVEEIGGELLEKLSVYEASLSCyseTPEFESpvvkiwyekALSL 397
Cdd:cd24142 158 TNPEALQTLASLRISQQRPDEAKEALRRSLE-----LWKDLKEEDEEEAEEDEAEEED---VPSYEF---------RISL 220
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2124051152 398 DKL----GKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRY---------KEAIECYDRALKL 450
Cdd:cd24142 221 AKLlielEMYEEALEVLEQLLDEDDEDVEVWYLLGWAYYLLGEKeqeeaaellRDARELLEKALKL 286
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
768-831 |
1.40e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 55.30 E-value: 1.40e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 768 LRNRAVAlskSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPD 831
Cdd:pfam13371 1 LKAIYLR---EEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPD 61
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
675-772 |
3.00e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 55.77 E-value: 3.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 675 RLDRNEKAVECYQKALDLDPQSS---TAWYGIASTVSDLGRLEEAISYYDQVLALNSSNS---EALLGKGIALANLGRYE 748
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYD 84
|
90 100
....*....|....*....|....
gi 2124051152 749 EAVSCYTTLLDSEPENHEALRNRA 772
Cdd:COG1729 85 KARATLEELIKKYPDSEAAKEARA 108
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
461-618 |
3.23e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.39 E-value: 3.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 461 KGLDSSKIKDYDSAVKSYDKALkIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHA 540
Cdd:COG4785 46 LALAAAALAAAALAAERIDRAL-ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYD 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 541 EASDCYNQTLQIDPDYSAARFKLS---ENLGQssTEASVSESVKYISMDANPVQALsggFWSYLLNHKYANSNDESELSE 617
Cdd:COG4785 125 AALEDFDRALELDPDYAYAYLNRGialYYLGR--YELAIADLEKALELDPNDPERA---LWLYLAERKLDPEKALALLLE 199
|
.
gi 2124051152 618 D 618
Cdd:COG4785 200 D 200
|
|
| SirB1 |
COG2912 |
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ... |
813-899 |
4.76e-09 |
|
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];
Pssm-ID: 442156 [Multi-domain] Cd Length: 264 Bit Score: 58.68 E-value: 4.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 813 GRYEEAAACYERMLEISpDNTEIIYR----QGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAID 888
Cdd:COG2912 156 GLLGPPAELEPEFLAPA-SNREILARmlrnLKAAYLREKDWERALRVVERLLLLDPDDPYEIRDRGLLYAQLGCYQAALE 234
|
90
....*....|.
gi 2124051152 889 CYNKALEYDPD 899
Cdd:COG2912 235 DLEYFLEQCPE 245
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
481-569 |
8.94e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.74 E-value: 8.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 481 ALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDCYNQTLQIDPDYSAAR 560
Cdd:COG5010 46 GRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAY 125
|
....*....
gi 2124051152 561 FKLSENLGQ 569
Cdd:COG5010 126 SNLAALLLS 134
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
36-113 |
9.82e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 56.85 E-value: 9.82e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 36 DLDEIISQRPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFP 113
Cdd:COG4785 95 DFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDP 172
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
520-725 |
1.11e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 56.85 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 520 PDSADVWYNKGLVLDELGKHAEASDCYNQTLQIDPDYSAArfklsenlgqssteasvsesvkyismdanpvqalsggfws 599
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEA---------------------------------------- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 600 yllnhkyansndeselsedlnffspefgydapWSGKAAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRN 679
Cdd:COG4785 110 --------------------------------YNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRY 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2124051152 680 EKAVECYQKALDLDPQS--STAWYGIASTVSD------------------LGRLEEAISYYDQVLA 725
Cdd:COG4785 158 ELAIADLEKALELDPNDpeRALWLYLAERKLDpekalallledwatayllQGDTEEARELFKLALA 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
37-113 |
1.26e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.63 E-value: 1.26e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2124051152 37 LDEIISQRPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFP 113
Cdd:COG4235 40 YEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
498-565 |
1.70e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.87 E-value: 1.70e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 498 ALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDcYNQTLQIDPDYSAARFKLSE 565
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAE 67
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
23-372 |
1.70e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 58.46 E-value: 1.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 23 VEGNENKGAKitPDLDEIISQRPASIEGLIDKGHALHSLREyDLSIDCYNDALDIDPNSSLAWYGKGRSLAE--LGE-YE 99
Cdd:TIGR00990 235 VERLLKKFAE--SKAKEILETKPENLPSVTFVGNYLQSFRP-KPRPAGLEDSNELDEETGNGQLQLGLKSPEskADEsYE 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 100 EAINCYEKALSTF---PVSSGSWSDKGDELFKLKKYVEAINCYDKSFAADTYVSTVWYQKALASEKMGLDEETLASYNKS 176
Cdd:TIGR00990 312 EAARAFEKALDLGklgEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 177 IELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPDMVNAWH 256
Cdd:TIGR00990 392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYN 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 257 KKGINLERVGAYEEALACYDFVLLSEPE------NLDALQGKGLCL-ENLGRIDEALKCYDEILTYNPGNSEAWYSKGSL 329
Cdd:TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELEKEtkpmymNVLPLINKALALfQWKQDFIEAENLCEKALIIDPECDIAVATMAQL 551
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2124051152 330 LNKAGKYDAAIACFDKAlnpdtgIQVEEIGGELLEKLSVYEAS 372
Cdd:TIGR00990 552 LLQQGDVDEALKLFERA------AELARTEGELVQAISYAEAT 588
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
36-113 |
1.77e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.43 E-value: 1.77e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 36 DLDEIISQRPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFP 113
Cdd:COG4783 60 LLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
179-345 |
2.23e-08 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 56.19 E-value: 2.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 179 LNSNSSRSLQMQ-GTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPDMVNAWHK 257
Cdd:TIGR02521 25 TDRNKAAKIRVQlALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNN 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 258 KGINLERVGAYEEALACYDFVLLSE--PENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEAWYSKGSLLNKAGK 335
Cdd:TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184
|
170
....*....|
gi 2124051152 336 YDAAIACFDK 345
Cdd:TIGR02521 185 YKDARAYLER 194
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
811-902 |
2.31e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 53.07 E-value: 2.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 811 ELGRYEEAAACYERMLEISPDNT---EIIYRQGKALERNGDFEGAIGCYDRILELNPGDV---DAYNNKGFALYKLEKYQ 884
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYD 84
|
90
....*....|....*...
gi 2124051152 885 LAIDCYNKALEYDPDNAA 902
Cdd:COG1729 85 KARATLEELIKKYPDSEA 102
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
867-900 |
2.66e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 50.50 E-value: 2.66e-08
10 20 30
....*....|....*....|....*....|....
gi 2124051152 867 VDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDN 900
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
295-418 |
2.85e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.48 E-value: 2.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 295 CLENLGRIDEALKCYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIAcFDKALnpdtgiqveeiggelleklsvyeasls 374
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKAL--------------------------- 52
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2124051152 375 cysetpEFESPVVKIWYEKALSLDKLGKYETAIECYDEVLETEP 418
Cdd:COG3063 53 ------KLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
841-933 |
3.03e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 52.69 E-value: 3.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 841 KALERNGDFEGAIGCYDRILELNPGDV---DAYNNKGFALYKLEKYQLAIDCYNKALEYDPDN---AATLYLQGCAYLTI 914
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLEL 80
|
90
....*....|....*....
gi 2124051152 915 SSNKAALNCFDRVVQLKPD 933
Cdd:COG1729 81 GDYDKARATLEELIKKYPD 99
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
747-968 |
3.24e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 57.69 E-value: 3.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 747 YEEAVSCYTTLLD-SEPENHEA--LRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYE 823
Cdd:TIGR00990 310 YEEAARAFEKALDlGKLGEKEAiaLNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFD 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 824 RMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAAT 903
Cdd:TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDV 469
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2124051152 904 LYLQGCAYLTISSNKAALNCFDRVVQL----KPDC--ITAWYNKGF-INNMMGNTEEAILCYDSALAIDPNS 968
Cdd:TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELeketKPMYmnVLPLINKALaLFQWKQDFIEAENLCEKALIIDPEC 541
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
467-560 |
6.16e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.92 E-value: 6.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 467 KIKDYDSAVKSYDKALKIDKNYTL---AWYGKAFALAKLGEYESSLKCYNKVLDAVPDS---ADVWYNKGLVLDELGKHA 540
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYD 84
|
90 100
....*....|....*....|
gi 2124051152 541 EASDCYNQTLQIDPDYSAAR 560
Cdd:COG1729 85 KARATLEELIKKYPDSEAAK 104
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
680-852 |
6.34e-08 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 54.65 E-value: 6.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 680 EKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLD 759
Cdd:TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 760 SE--PENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIY 837
Cdd:TIGR02521 128 DPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW 207
|
170
....*....|....*
gi 2124051152 838 RQGKALERNGDFEGA 852
Cdd:TIGR02521 208 LGIRIARALGDVAAA 222
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
826-1010 |
9.20e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 56.63 E-value: 9.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 826 LEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLY 905
Cdd:TIGR02917 49 LQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 906 -LQGCAYLtissnkaalncfdrvvqlkpdcitawynkgfinnMMGNTEEAILCYDSALAIDPNSPSTLYNKRFALYNLKK 984
Cdd:TIGR02917 129 aLRGLAYL----------------------------------GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENR 174
|
170 180
....*....|....*....|....*.
gi 2124051152 985 LDEAEVCKAKLDEIDPGFVDALQNKG 1010
Cdd:TIGR02917 175 FDEARALIDEVLTADPGNVDALLLKG 200
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
232-322 |
9.53e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.53 E-value: 9.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 232 GDYEAAVDCYDKAISFNPD---MVNAWHKKGINLERVGAYEEALACYDFVLLSEPEN---LDALQGKGLCLENLGRIDEA 305
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYDKA 86
|
90
....*....|....*..
gi 2124051152 306 LKCYDEILTYNPGNSEA 322
Cdd:COG1729 87 RATLEELIKKYPDSEAA 103
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
37-180 |
9.90e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 52.66 E-value: 9.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 37 LDEIISQRPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPVSS 116
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNP 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 117 GSWSDKGDELFKLKKYVEAINCYDKSFAADTYVSTVWYQKALASEKMGLDEETLASYNKSIELN 180
Cdd:COG5010 89 ELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
773-865 |
1.04e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.15 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 773 VALSKSNKSEDALADYDRIIELEPDNT---QILAEKASLFEELGRYEEAAACYERMLEISPDNT---EIIYRQGKALERN 846
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLEL 80
|
90
....*....|....*....
gi 2124051152 847 GDFEGAIGCYDRILELNPG 865
Cdd:COG1729 81 GDYDKARATLEELIKKYPD 99
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
740-861 |
1.06e-07 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 54.12 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 740 ALANLGRYEEAVSCYTTLLDSE-PENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTqilAEKASL-----FEELG 813
Cdd:COG4700 98 ALLELGRYDEAIELYEEALTGIfADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFK---SSDAHLlyaraLEALG 174
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2124051152 814 RYEEAAACYERMLEISPdNTEIIYRQGKALERNGDFEGAIGCYDRILE 861
Cdd:COG4700 175 DLEAAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEEILD 221
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
362-451 |
1.31e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 52.27 E-value: 1.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 362 LLEKLSVYEASLSCYSETPEFESPVVKIWYEKALSLDKLGKYETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAI 441
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|
gi 2124051152 442 ECYDRALKLD 451
Cdd:COG5010 143 AALQRALGTS 152
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
637-699 |
1.33e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 49.91 E-value: 1.33e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051152 637 AIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTA 699
Cdd:pfam13371 3 AIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
433-523 |
1.38e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.15 E-value: 1.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 433 KLGRYKEAIECYDRALKLDSRH---AKVWYKKGLDSSKIKDYDSAVKSYDKALKIDKNYTL---AWYGKAFALAKLGEYE 506
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYD 84
|
90
....*....|....*..
gi 2124051152 507 SSLKCYNKVLDAVPDSA 523
Cdd:COG1729 85 KARATLEELIKKYPDSE 101
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
739-834 |
1.79e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 50.76 E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 739 IALANLGRYEEAVSCYTTLLDSEPENH---EALRNRAVALSKSNKSEDALADYDRIIELEPDNTQI---LAEKASLFEEL 812
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLEL 80
|
90 100
....*....|....*....|..
gi 2124051152 813 GRYEEAAACYERMLEISPDNTE 834
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEA 102
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
842-899 |
1.93e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 49.14 E-value: 1.93e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 842 ALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPD 899
Cdd:pfam13371 4 IYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPD 61
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
267-418 |
2.13e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.50 E-value: 2.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 267 AYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIACFDKA 346
Cdd:COG5010 35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKA 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 347 --LNPDTgiqveeiggelleklsvyeaslscysetpefespvVKIWYEKALSLDKLGKYETAIECYDEVLETEP 418
Cdd:COG5010 115 laLSPDN-----------------------------------PNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
36-113 |
2.17e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.78 E-value: 2.17e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 36 DLDEIISQRPASIEGLIDKGHALHSLREYDLSIDcYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFP 113
Cdd:COG3063 14 YYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
395-483 |
2.26e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 50.38 E-value: 2.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 395 LSLDKLGKYETAIECYDEVLETEPGHAV---VWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKV---WYKKGLDSSKI 468
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLEL 80
|
90
....*....|....*
gi 2124051152 469 KDYDSAVKSYDKALK 483
Cdd:COG1729 81 GDYDKARATLEELIK 95
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
867-900 |
2.32e-07 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 47.83 E-value: 2.32e-07
10 20 30
....*....|....*....|....*....|....
gi 2124051152 867 VDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDN 900
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
43-211 |
2.41e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 53.00 E-value: 2.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 43 QRPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPVSSGSWSDK 122
Cdd:COG4785 68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 123 GDELFKLKKYVEAINcydksfaadtyvstvWYQKALAsEKMGLDEETLASYNKSIELNSNSSRSLQMQ--GTAYIGLEQY 200
Cdd:COG4785 148 GIALYYLGRYELAIA---------------DLEKALE-LDPNDPERALWLYLAERKLDPEKALALLLEdwATAYLLQGDT 211
|
170
....*....|.
gi 2124051152 201 KEAMEAFDRAL 211
Cdd:COG4785 212 EEARELFKLAL 222
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
837-901 |
2.92e-07 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 48.49 E-value: 2.92e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 837 YRQGKALERNGDFEGAIGCYDRILELN---PGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNA 901
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| pgaA |
PRK10049 |
outer membrane protein PgaA; Provisional |
678-819 |
3.28e-07 |
|
outer membrane protein PgaA; Provisional
Pssm-ID: 236644 [Multi-domain] Cd Length: 765 Bit Score: 54.72 E-value: 3.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 678 RNEK----AVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLAL--NSSNSEALlgkGIALANLGRYEEAV 751
Cdd:PRK10049 60 RNLKqwqnSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGapDKANLLAL---AYVYKRAGRHWDEL 136
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 752 SCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASlfeELGRYEEAA 819
Cdd:PRK10049 137 RAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAA---ELVRLSFMP 201
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
92-216 |
3.94e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.01 E-value: 3.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 92 LAELGEYEEAINCYEKALSTFPVSSGSWSDKGDELFKLKKYVEAIncydksfaadtyvstvwyqkalasekmgldeetla 171
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI----------------------------------- 46
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2124051152 172 SYNKSIELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPD 216
Cdd:COG3063 47 ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
79-273 |
3.94e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 52.22 E-value: 3.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 79 PNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPvssgswsdkgdelfklkKYVEAincydksfaadtyvstvWYQKAL 158
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDP-----------------DLAEA-----------------YNNRGL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 159 ASEKMGLDEETLASYNKSIELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSE--LWYQkgaILDKFGDYEA 236
Cdd:COG4785 116 AYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPEraLWLY---LAERKLDPEK 192
|
170 180 190
....*....|....*....|....*....|....*..
gi 2124051152 237 AVDCYDKAISfnpdmvNAWHKKGINLERVGAYEEALA 273
Cdd:COG4785 193 ALALLLEDWA------TAYLLQGDTEEARELFKLALA 223
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
37-115 |
4.57e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 50.73 E-value: 4.57e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2124051152 37 LDEIISQRPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPVS 115
Cdd:COG5010 77 LEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
875-969 |
5.06e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 49.22 E-value: 5.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 875 FALYKLEKYQLAIDCYNKALEYDPDNAAT---LYLQGCAYLTISSNKAALNCFDRVVQLKPDCI---TAWYNKGFINNMM 948
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLEL 80
|
90 100
....*....|....*....|.
gi 2124051152 949 GNTEEAILCYDSALAIDPNSP 969
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSE 101
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
805-869 |
5.79e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 47.98 E-value: 5.79e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2124051152 805 KASLFEElGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDA 869
Cdd:pfam13371 2 KAIYLRE-EDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
|
|
| SirB1 |
COG2912 |
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ... |
768-845 |
8.08e-07 |
|
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];
Pssm-ID: 442156 [Multi-domain] Cd Length: 264 Bit Score: 51.75 E-value: 8.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 768 LRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDN--TEIIYRQGKALER 845
Cdd:COG2912 182 LRNLKAAYLREKDWERALRVVERLLLLDPDDPYEIRDRGLLYAQLGCYQAALEDLEYFLEQCPEDpdAELIKEQLEELRR 261
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
636-699 |
9.70e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 48.45 E-value: 9.70e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2124051152 636 AAIYSKLGMYEDALTCYDMVLEISPSSS---DAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTA 699
Cdd:COG1729 37 GEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
641-733 |
9.79e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 48.45 E-value: 9.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 641 KLGMYEDALTCYDMVLEISPSSS---DAWYQKGLIFERLDRNEKAVECYQKALDLDPQSS---TAWYGIASTVSDLGRLE 714
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYD 84
|
90
....*....|....*....
gi 2124051152 715 EAISYYDQVLALNSSNSEA 733
Cdd:COG1729 85 KARATLEELIKKYPDSEAA 103
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
901-1010 |
1.05e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 51.65 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 901 AATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFINNMMGNTEEAILCYDSALAIDPNSPSTLYNKRFALY 980
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110
....*....|....*....|....*....|
gi 2124051152 981 NLKKLDEAEVCKAKLDEIDPGFVDALQNKG 1010
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLA 117
|
|
| SirB1 |
COG2912 |
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ... |
788-869 |
1.22e-06 |
|
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];
Pssm-ID: 442156 [Multi-domain] Cd Length: 264 Bit Score: 51.36 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 788 YDRIIELEP------DNTQILAE-----KASLFEElGRYEEAAACYERMLEISPDN-TEIIYRqGKALERNGDFEGAIGC 855
Cdd:COG2912 158 LGPPAELEPeflapaSNREILARmlrnlKAAYLRE-KDWERALRVVERLLLLDPDDpYEIRDR-GLLYAQLGCYQAALED 235
|
90
....*....|....
gi 2124051152 856 YDRILELNPGDVDA 869
Cdd:COG2912 236 LEYFLEQCPEDPDA 249
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
665-967 |
1.25e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 51.83 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 665 AWYQKGLI--FE-RLDRNEKAvecYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEAllgKGIAL 741
Cdd:COG3071 18 AALLEGLLalAEgRYARAEKL---LSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELA---VLLTR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 742 ANL----GRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNksedalaDYDRIIELEPdntqiLAEKASLF--EELGRY 815
Cdd:COG3071 92 AELlldqGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLG-------DWEELLELLP-----ALRKHKALsaEEAQAL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 816 EEAAACyERMLEISPD-----------------NTEIIYRQGKALERNGDFEGAIGCYDRILELNPGD--VDAYnnkgfA 876
Cdd:COG3071 160 ERRAYL-GLLRQAARDaealkalwkalpraerrDPELAAAYARALIALGDHDEAERLLREALKRQWDPrlVRLY-----G 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 877 LYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLtisSNK---AALNCFDRVVQLKPDcITAWYNKGFINNMMGNTEE 953
Cdd:COG3071 234 RLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCL---RNQlwgKAREYLEAALALRPS-AEAYAELARLLEQLGDPEE 309
|
330
....*....|....
gi 2124051152 954 AILCYDSALAIDPN 967
Cdd:COG3071 310 AAEHYRKALALALG 323
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
49-347 |
1.62e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 51.09 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 49 EGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKALSTFPvsSGSWSdkgdelfk 128
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP--DGGYE-------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 129 lkKY---------VEAINcydksfaadtyvstvWYQKALasEKMgldEETLASYNKSIELNSNSSRSLQMQ-GTAYIGL- 197
Cdd:cd24142 71 --KYlylgqlsggEEALQ---------------YYEKGI--EIL---EEELQALQAASAEAEEEAEELKRKlSSALCALa 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 198 EQY-----------KEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFnpdmvnaWHKKGINLER-- 264
Cdd:cd24142 129 EIYmtdlcdepdaeQRCEELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL-------WKDLKEEDEEea 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 265 -------------------------VGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKcydeiltynpgn 319
Cdd:cd24142 202 eedeaeeedvpsyefrislakllieLEMYEEALEVLEQLLDEDDEDVEVWYLLGWAYYLLGEKEQEEA------------ 269
|
330 340
....*....|....*....|....*...
gi 2124051152 320 SEAWYSKGSLLNKAGKYDAAIACFDKAL 347
Cdd:cd24142 270 AELLRDARELLEKALKLYEKLEYEDEEL 297
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
948-1010 |
1.73e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.47 E-value: 1.73e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051152 948 MGNTEEAILCYDSALAIDPNSPSTLYNKRFALYNLKKLDEAEVCKaKLDEIDPGFVDALQNKG 1010
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAEALLNLA 66
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
491-555 |
1.91e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 46.61 E-value: 1.91e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051152 491 AWYGKAFALAKLGEYESSLKCYNKVLDAV--------PDSADVWYNKGLVLDELGKHAEASDCYNQTLQIDPD 555
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
665-726 |
2.17e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 46.61 E-value: 2.17e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 665 AWYQKGLIFERLDRNEKAVECYQKALDL--------DPQSSTAWYGIASTVSDLGRLEEAISYYDQVLAL 726
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
425-565 |
2.36e-06 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 50.03 E-value: 2.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 425 YMKGLDLDKlgrykeAIECYDRALKLDSRHAKVWYKKGLDSSKIKDYDSAVKSYDKALKIDKNYT--LAWYGkAFaLAKL 502
Cdd:TIGR02521 41 YLEQGDLEV------AKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGdvLNNYG-TF-LCQQ 112
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2124051152 503 GEYESSLKCYNKVLDA--VPDSADVWYNKGLVLDELGKHAEASDCYNQTLQIDPDYSAARFKLSE 565
Cdd:TIGR02521 113 GKYEQAMQQFEQAIEDplYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
57-141 |
2.77e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 47.29 E-value: 2.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 57 ALHSLREYDLSIDCYNDALDIDPNSSL---AWYGKGRSLAELGEYEEAINCYEKALSTFPvsSGSWSDK-----GDELFK 128
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYP--DSPKAPDallklGLSYLE 79
|
90
....*....|...
gi 2124051152 129 LKKYVEAINCYDK 141
Cdd:COG1729 80 LGDYDKARATLEE 92
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
944-1010 |
2.86e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.42 E-value: 2.86e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2124051152 944 INNMMGNTEEAILCYDSALAIDPNSPSTLYNKRFALYNLKKLDEAEVCKAKLDEIDPGFVDALQNKG 1010
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLA 129
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
42-568 |
3.04e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.14 E-value: 3.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 42 SQRPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSsLAWYGKGRSLAELGEYEEAINCYEKALSTFPVSSGSWSD 121
Cdd:TIGR00990 121 EERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNR 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 122 KGDELFKLKKYVEAI-----NCYDKSFAADTYVSTVW-----YQKALASEKMGLDEETL-------------------AS 172
Cdd:TIGR00990 200 RANAYDGLGKYADALldltaSCIIDGFRNEQSAQAVErllkkFAESKAKEILETKPENLpsvtfvgnylqsfrpkprpAG 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 173 YNKSIELNSNSsrslqMQGTAYIGL--------EQYKEAMEAFDRALNITPDNSELWYQ---KGAILDKFGDYEAAVDCY 241
Cdd:TIGR00990 280 LEDSNELDEET-----GNGQLQLGLkspeskadESYEEAARAFEKALDLGKLGEKEAIAlnlRGTFKCLKGKHLEALADL 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 242 DKAISFNPDMVNAWHKKG-INLERvGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNS 320
Cdd:TIGR00990 355 SKSIELDPRVTQSYIKRAsMNLEL-GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 321 EAWYSKGSLLNKAGKYDAAIACFDKALNPdtgiqveeiggelleklsvyeaslscYSETPEFESpvvkiwYEKALSLDKl 400
Cdd:TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKN--------------------------FPEAPDVYN------YYGELLLDQ- 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 401 GKYETAIECYDEVLETEpghavvwymKGLDldklGRYKEAIECYDRALKLdsrhakvwykkgldSSKIKDYDSAVKSYDK 480
Cdd:TIGR00990 481 NKFDEAIEKFDTAIELE---------KETK----PMYMNVLPLINKALAL--------------FQWKQDFIEAENLCEK 533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 481 ALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKvldavpdSADVWYNKGLVLDELgKHAEASdcyNQTLQIDPDYSAAR 560
Cdd:TIGR00990 534 ALIIDPECDIAVATMAQLLLQQGDVDEALKLFER-------AAELARTEGELVQAI-SYAEAT---RTQIQVQEDYPVLA 602
|
....*...
gi 2124051152 561 FKLSENLG 568
Cdd:TIGR00990 603 SKLQGMLG 610
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
802-895 |
5.08e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 49.55 E-value: 5.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 802 LAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPgdvdaynNKGFalyklE 881
Cdd:cd24142 3 LLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP-------DGGY-----E 70
|
90 100
....*....|....*....|...
gi 2124051152 882 KY----QL-----AIDCYNKALE 895
Cdd:cd24142 71 KYlylgQLsggeeALQYYEKGIE 93
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
663-695 |
5.38e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.95 E-value: 5.38e-06
10 20 30
....*....|....*....|....*....|...
gi 2124051152 663 SDAWYQKGLIFERLDRNEKAVECYQKALDLDPQ 695
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
711-772 |
5.41e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 44.88 E-value: 5.41e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2124051152 711 GRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRA 772
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
523-556 |
5.70e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.95 E-value: 5.70e-06
10 20 30
....*....|....*....|....*....|....
gi 2124051152 523 ADVWYNKGLVLDELGKHAEASDCYNQTLQIDPDY 556
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
630-694 |
6.68e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.26 E-value: 6.68e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2124051152 630 APWSGKAAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDP 694
Cdd:COG5010 89 ELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
29-348 |
7.31e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 50.47 E-value: 7.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 29 KGAKITPDLDEIISQRPASIEGLIDKGHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINCYEKA 108
Cdd:TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 109 LSTFPVSSGSWSDKGDELFKLKKYVEAINCYDKSFAADTYVSTVWYQkALASEKMGLDEETLASYNKSIELNSNSSRSLQ 188
Cdd:TIGR02917 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL-HRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 189 MQGTAYIGLEQYKEAMEAFDRALNITPDNSelwyqkgAILDKFgdyeaavdcydkaisfnpdmvnAWhkkgINLERVGAy 268
Cdd:TIGR02917 775 ALAELYLAQKDYDKAIKHYQTVVKKAPDNA-------VVLNNL----------------------AW----LYLELKDP- 820
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 269 eEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIACFDKALN 348
Cdd:TIGR02917 821 -RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
804-866 |
7.35e-06 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 44.63 E-value: 7.35e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2124051152 804 EKASLFEELGRYEEAAACYERMLE---ISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGD 866
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALArfpESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
200-276 |
7.97e-06 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 47.36 E-value: 7.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 200 YKEAMEAFDRALNI---TPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPDMVNA-------WHKKGINLERVGAYE 269
Cdd:PRK02603 51 YAEALENYEEALKLeedPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAlnniaviYHKRGEKAEEAGDQD 130
|
....*..
gi 2124051152 270 EALACYD 276
Cdd:PRK02603 131 EAEALFD 137
|
|
| BTAD |
pfam03704 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
672-814 |
8.71e-06 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 397662 [Multi-domain] Cd Length: 146 Bit Score: 46.50 E-value: 8.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 672 IFERL----------DRNEKAVECYQKALDLdpqsstaWYGIA-STVSDLGRLEEAISYYDQ--VLALnssnsEALLGKG 738
Cdd:pfam03704 5 RFERLvragraalaaGDPAEAARLLRAALAL-------WRGPAlADLPAGPWLEAERARLEElrLEAL-----EARAEAD 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2124051152 739 IALanlGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIielepdntqilaeKASLFEELGR 814
Cdd:pfam03704 73 LRL---GRHEEALPELEALVAAHPLRERLHRLLMLALYRSGRQAEALAVYRRL-------------RRVLAEELGV 132
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
421-454 |
9.05e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.18 E-value: 9.05e-06
10 20 30
....*....|....*....|....*....|....
gi 2124051152 421 AVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRH 454
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
260-348 |
1.33e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 45.37 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 260 INLERVGAYEEALACYDFVLLSEPENL---DALQGKGLCLENLGRIDEALKCYDEILTYNPGNS---EAWYSKGSLLNKA 333
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLEL 80
|
90
....*....|....*
gi 2124051152 334 GKYDAAIACFDKALN 348
Cdd:COG1729 81 GDYDKARATLEELIK 95
|
|
| TPR-S |
pfam20308 |
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR ... |
814-905 |
1.38e-05 |
|
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR repeats forming a tightly-wound solenoid structure harbouring a deep central pocket. The TPR-S binding pocket is lined with several conserved aromatic and polar residues predicted to bind a NAD+-derived nucleotide in prokaryotic NAD+-derived nucleotide-activated effector conflict systems. It has been acquired at the base of the choanoflagellate-animal lineage as a core component of the ASK signalosome.
Pssm-ID: 466458 [Multi-domain] Cd Length: 105 Bit Score: 44.96 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 814 RYEEAAACYERMLEIsPDNTEIIYRQGKALER-NGDFEGAIGCYDRILELNPGDVDAYNNKGfALYK---------LEKY 883
Cdd:pfam20308 1 DYDAAVELLEALLAL-PEDARAQEQLALALARlPGDRDEALDVLEDLIERLGEDPETLGLLG-RIYKrlwlesaedREAL 78
|
90 100
....*....|....*....|....*..
gi 2124051152 884 QLAIDCYNKALEYDPD-----NAATLY 905
Cdd:pfam20308 79 DQAIEAYRKAFELDPDdypgiNAATLL 105
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
663-695 |
1.40e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.82 E-value: 1.40e-05
10 20 30
....*....|....*....|....*....|...
gi 2124051152 663 SDAWYQKGLIFERLDRNEKAVECYQKALDLDPQ 695
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
55-116 |
1.62e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.98 E-value: 1.62e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2124051152 55 GHALHSLREYDLSIDCYNDALDIDPNSSL---AWYGKGRSLAELGEYEEAINCYEKALSTFPVSS 116
Cdd:COG1729 37 GEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKARATLEELIKKYPDSE 101
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
632-695 |
1.87e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.92 E-value: 1.87e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2124051152 632 WSGKAAIYSKLGMYEDALTCYDMVLEI--------SPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQ 695
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
386-450 |
1.94e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.92 E-value: 1.94e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051152 386 VVKIWYEKALSLDKLGKYETAIECYDEVLE--------TEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKL 450
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
747-831 |
2.02e-05 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 48.24 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 747 YEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERML 826
Cdd:PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97
|
....*
gi 2124051152 827 EISPD 831
Cdd:PLN03088 98 SLAPG 102
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
813-871 |
2.07e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 43.34 E-value: 2.07e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2124051152 813 GRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYN 871
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
772-933 |
2.10e-05 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 47.58 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 772 AVALSKSNKSEDALADYDRII---ELEPDN-TQILAEKASLFEELG-----RYEeaaacYERMLEISPDNTEIIYRQGKA 842
Cdd:PRK11189 33 AVPLQPTLQQEVILARLNQILasrDLTDEErAQLHYERGVLYDSLGlralaRND-----FSQALALRPDMADAYNYLGIY 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 843 LERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDN---AATLYLqgcAYLTISSNKA 919
Cdd:PRK11189 108 LTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDpyrALWLYL---AESKLDPKQA 184
|
170
....*....|....
gi 2124051152 920 ALNCFDRVVQLKPD 933
Cdd:PRK11189 185 KENLKQRYEKLDKE 198
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
867-1043 |
2.65e-05 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 46.95 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 867 VDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFINN 946
Cdd:TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 947 MMGNTEEAILCYDSALAiDPNSPS---TLYNKRFALYNLKKLDEAEVCKAKLDEIDPGFVDAL-----------QNKGTR 1012
Cdd:TIGR02521 111 QQGKYEQAMQQFEQAIE-DPLYPQparSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLlelaelyylrgQYKDAR 189
|
170 180 190
....*....|....*....|....*....|..
gi 2124051152 1013 FFLpEAYDSTLNYTLPSRWYGGE-ENVSGNVS 1043
Cdd:TIGR02521 190 AYL-ERYQQTYNQTAESLWLGIRiARALGDVA 220
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
867-899 |
2.66e-05 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 42.12 E-value: 2.66e-05
10 20 30
....*....|....*....|....*....|...
gi 2124051152 867 VDAYNNKGFALYKLEKYQLAIDCYNKALEYDPD 899
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
124-219 |
2.73e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.60 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 124 DELFKLKKYVEAINCYD---KSFAADTYVSTVWYQKALASEKMGLDEETLASYNKSIELNSNSSR---SLQMQGTAYIGL 197
Cdd:COG1729 1 KALLKAGDYDEAIAAFKaflKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLEL 80
|
90 100
....*....|....*....|..
gi 2124051152 198 EQYKEAMEAFDRALNITPDNSE 219
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEA 102
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
391-455 |
2.88e-05 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 43.09 E-value: 2.88e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 391 YEKALSLDKLGKYETAIECYDEVLE---TEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHA 455
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALArfpESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
635-912 |
3.00e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 47.24 E-value: 3.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 635 KAAIYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTA--WYgiastvsdLGR 712
Cdd:cd24142 6 KAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEkyLY--------LGQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 713 L---EEAISYYDQvlalnssnseallGKGIALANLGRYEEAVSCyttlldsEPENHEALRNR------AVA------LSK 777
Cdd:cd24142 78 LsggEEALQYYEK-------------GIEILEEELQALQAASAE-------AEEEAEELKRKlssalcALAeiymtdLCD 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 778 SNKSEDALADY-DRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLeispdntEIIYRQGKALERNGDFEgaigcy 856
Cdd:cd24142 138 EPDAEQRCEELiTKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSL-------ELWKDLKEEDEEEAEED------ 204
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 857 drilELNPGDVDAYNNKgFALYKL----EKYQLAIDCYNKALEYDPDNAATLYLQGCAYL 912
Cdd:cd24142 205 ----EAEEEDVPSYEFR-ISLAKLlielEMYEEALEVLEQLLDEDDEDVEVWYLLGWAYY 259
|
|
| BTAD |
cd15831 |
Bacterial Transcriptional Activation (BTA) domain; The Bacterial Transcriptional Activation ... |
667-813 |
3.67e-05 |
|
Bacterial Transcriptional Activation (BTA) domain; The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.
Pssm-ID: 276938 [Multi-domain] Cd Length: 146 Bit Score: 44.90 E-value: 3.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 667 YQKGLIFERLDRNEKAVECYQKALDLdpqsstaWYGIA-STVSDLGRLEEAISYYDQ--VLALnssnsEALLGKGIALan 743
Cdd:cd15831 10 VAEGRRALAAGDPEEAARLLRAALAL-------WRGPAlADVRAGPVLEAEAARLEElrLRAL-----EARIEADLAL-- 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 744 lGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIielepdntqilaeKASLFEELG 813
Cdd:cd15831 76 -GRHRELVAELRALVAEHPLRERLHRQLMLALYRSGRQAEALRVYRRL-------------RRRLAEELG 131
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
121-218 |
3.99e-05 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 47.09 E-value: 3.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 121 DKGDELFKLKKYVEAINCYDKSFAADTYVSTVWYQKALASEKMGLDEETLASYNKSIELNSNSSRSLQMQGTAYIGLEQY 200
Cdd:PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86
|
90
....*....|....*...
gi 2124051152 201 KEAMEAFDRALNITPDNS 218
Cdd:PLN03088 87 QTAKAALEKGASLAPGDS 104
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
919-969 |
4.07e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 42.59 E-value: 4.07e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 2124051152 919 AALNCFDRVVQLKPDCITAWYNKGFINNMMGNTEEAILCYDSALAIDPNSP 969
Cdd:pfam13371 13 RALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAP 63
|
|
| NatA_aux_su |
pfam12569 |
N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal ... |
763-965 |
4.29e-05 |
|
N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal acetyltransferase A (NatA) auxiliary subunit (also known as NMDA receptor-regulated protein 1), which is a non-catalytic component of the NatA N-terminal acetyltransferase that catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protecting against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome, and may present the N terminus of nascent polypeptides for acetylation.
Pssm-ID: 463630 [Multi-domain] Cd Length: 514 Bit Score: 47.65 E-value: 4.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 763 ENHEALRNRAVALSKSNKSEDALAdydRIIELEPDNTQILA---EKASLFEELGRYEEAAACYERMLEISPDNteIIYRQ 839
Cdd:pfam12569 2 EHSELLLYKNQIIAESGDLEEALE---HLEKVEKQIVDKLAvleTKADYLLKLGRKEEAEATYRALLERNPEN--HAYYE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 840 G--KAL-ERNGDFEGAIGCYDRILELNP--------------GD-----VDAYNNKGF------------ALYK------ 879
Cdd:pfam12569 77 GleKALgISKEDHEALLALYDELAEKYPrsdaprrlpldfleGEefkelADKYLRRMLrkgvpslfvnlkSLYTdsekvd 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 880 -----LEKYQLAIDCYNKALEYDPDNAA---------TLYLQGCAYLTISSNKAALNCFDRVVQLKPDCITAWYNKGFIN 945
Cdd:pfam12569 157 iieelVEGYVSSLKTNGKFSGSDNGDGEkeppstllwTYYFLAQHYDYLGSYEKALEYIDKAIDHTPTLIELYMTKARIY 236
|
250 260
....*....|....*....|
gi 2124051152 946 NMMGNTEEAILCYDSALAID 965
Cdd:pfam12569 237 KHAGDLQKAAEWMDEARSLD 256
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
732-828 |
4.51e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 46.85 E-value: 4.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 732 EALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTqilAEK----AS 807
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGG---YEKylylGQ 77
|
90 100
....*....|....*....|.
gi 2124051152 808 LFEElgryEEAAACYERMLEI 828
Cdd:cd24142 78 LSGG----EEALQYYEKGIEI 94
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
51-109 |
4.61e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.76 E-value: 4.61e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2124051152 51 LIDKGHALHSLREYDLSIDCYNDALDI--------DPNSSLAWYGKGRSLAELGEYEEAINCYEKAL 109
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
735-798 |
4.84e-05 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 42.32 E-value: 4.84e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2124051152 735 LGKGIALANLGRYEEAVSCYTTLLDSE---PENHEALRNRAVALSKSNKSEDALADYDRIIELEPDN 798
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
218-250 |
5.61e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 41.25 E-value: 5.61e-05
10 20 30
....*....|....*....|....*....|...
gi 2124051152 218 SELWYQKGAILDKFGDYEAAVDCYDKAISFNPD 250
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
421-451 |
5.83e-05 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 40.97 E-value: 5.83e-05
10 20 30
....*....|....*....|....*....|.
gi 2124051152 421 AVVWYMKGLDLDKLGRYKEAIECYDRALKLD 451
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELD 31
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
826-933 |
5.97e-05 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 43.82 E-value: 5.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 826 LEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKALEYDPDNAATLY 905
Cdd:TIGR02552 10 LGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF 89
|
90 100
....*....|....*....|....*...
gi 2124051152 906 LQGCAYLTISSNKAALNCFDRVVQLKPD 933
Cdd:TIGR02552 90 HAAECLLALGEPESALKALDLAIEICGE 117
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
469-526 |
6.61e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 41.80 E-value: 6.61e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 469 KDYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVW 526
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
421-454 |
6.78e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 40.89 E-value: 6.78e-05
10 20 30
....*....|....*....|....*....|....
gi 2124051152 421 AVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRH 454
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| Coatomer_E |
pfam04733 |
Coatomer epsilon subunit; This family represents the epsilon subunit of the coatomer complex, ... |
672-788 |
7.87e-05 |
|
Coatomer epsilon subunit; This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.
Pssm-ID: 398419 [Multi-domain] Cd Length: 288 Bit Score: 45.93 E-value: 7.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 672 IFERLDRNEKAVECYQKALDLDP-----QSSTAWYGIASTVSdlgRLEEAISYYDQVLALNSSNSEALLGKGIALANLGR 746
Cdd:pfam04733 138 ILLKMHRIDLAEQQLKKMQQIDEdatltQLANAWVKLAVGGE---KIQDAYYIFQEFSEKYDSTPLLLNGQAVCCMCLGR 214
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2124051152 747 YEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADY 788
Cdd:pfam04733 215 YEEAESLLKEALDKDAKDPETLINLVVCALHLGKPAEVSNRN 256
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
191-347 |
8.03e-05 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 45.64 E-value: 8.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 191 GTAYIGLEQYKEAMEAFDRALN-ITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPDmvnawHKKGinlervgayE 269
Cdd:COG4700 96 ADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPD-----FKSS---------D 161
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 270 EALAcydfvllsepenldalqgKGLCLENLGRIDEALKCYDEILTYNPGnSEAWYSKGSLLNKAGKYDAAIACFDKAL 347
Cdd:COG4700 162 AHLL------------------YARALEALGDLEAAEAELEALARRYSG-PEARYRYAKFLARQGRTAEAKELLEEIL 220
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
698-759 |
9.06e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.99 E-value: 9.06e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 698 TAWYGIASTVSDLGRLEEAISYYDQVLALNSSN--------SEALLGKGIALANLGRYEEAVSCYTTLLD 759
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgpdhpltATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
664-695 |
9.80e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 40.46 E-value: 9.80e-05
10 20 30
....*....|....*....|....*....|..
gi 2124051152 664 DAWYQKGLIFERLDRNEKAVECYQKALDLDPQ 695
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
840-880 |
9.82e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.53 E-value: 9.82e-05
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2124051152 840 GKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKL 880
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
167-250 |
1.04e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.67 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 167 EETLASYNKSIELNSNSSRSLQMQ---GTAYIGLEQYKEAMEAFDRALNITPDNS---ELWYQKGAILDKFGDYEAAVDC 240
Cdd:COG1729 10 DEAIAAFKAFLKRYPNSPLAPDALywlGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARAT 89
|
90
....*....|
gi 2124051152 241 YDKAISFNPD 250
Cdd:COG1729 90 LEELIKKYPD 99
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
803-930 |
1.05e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 46.78 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 803 AEKAslfEELGRYEEAAACYERMLEISPDNTEIIYR------QGKALERNGDFEGAIGCYDRILELN------------- 863
Cdd:COG3899 712 ARRA---LARGAYAEALRYLERALELLPPDPEEEYRlallleLAEALYLAGRFEEAEALLERALAARalaalaalrhgnp 788
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051152 864 PGDVDAYNNKGFALykLEKYQLAIDCYNKALE------YDPDNAATLYLQGCAYLTISSNKAALNCFDRVVQL 930
Cdd:COG3899 789 PASARAYANLGLLL--LGDYEEAYEFGELALAlaerlgDRRLEARALFNLGFILHWLGPLREALELLREALEA 859
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
84-113 |
1.12e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.10 E-value: 1.12e-04
10 20 30
....*....|....*....|....*....|
gi 2124051152 84 AWYGKGRSLAELGEYEEAINCYEKALSTFP 113
Cdd:pfam00515 3 ALYNLGNAYFKLGKYDEALEYYEKALELNP 32
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
682-834 |
1.22e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 46.23 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 682 AVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSE 761
Cdd:PRK11447 480 AAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ 559
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 762 -PENHEALRNR---------AVALSKSNKSEDALAdydrIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPD 831
Cdd:PRK11447 560 wNSNIQELAQRlqsdqvletANRLRDSGKEAEAEA----LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG 635
|
...
gi 2124051152 832 NTE 834
Cdd:PRK11447 636 NAD 638
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
874-912 |
1.28e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.15 E-value: 1.28e-04
10 20 30
....*....|....*....|....*....|....*....
gi 2124051152 874 GFALYKLEKYQLAIDCYNKALEYDPDNAATLYLQGCAYL 912
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYY 39
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
452-543 |
1.33e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 43.89 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 452 SRHAKVWYKKGLDSSKIKDYDSAVKSYDKALK-----IDKNYTLawYGKAFALAKLGEYESSLKCYNKVLDAVPDSADVW 526
Cdd:PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKleedpNDRSYIL--YNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109
|
90
....*....|....*..
gi 2124051152 527 YNKGLVLDELGKHAEAS 543
Cdd:PRK02603 110 NNIAVIYHKRGEKAEEA 126
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
523-556 |
1.36e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 40.12 E-value: 1.36e-04
10 20 30
....*....|....*....|....*....|....
gi 2124051152 523 ADVWYNKGLVLDELGKHAEASDCYNQTLQIDPDY 556
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
770-832 |
1.41e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 41.17 E-value: 1.41e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2124051152 770 NRAVALSKSNKSEDALADYDRIIELE---PDNTQILAEKASLFEELGRYEEAAACYERMLEISPDN 832
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
937-967 |
1.45e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.10 E-value: 1.45e-04
10 20 30
....*....|....*....|....*....|.
gi 2124051152 937 AWYNKGFINNMMGNTEEAILCYDSALAIDPN 967
Cdd:pfam00515 3 ALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| PRK15179 |
PRK15179 |
Vi polysaccharide biosynthesis protein TviE; Provisional |
740-847 |
1.47e-04 |
|
Vi polysaccharide biosynthesis protein TviE; Provisional
Pssm-ID: 185101 [Multi-domain] Cd Length: 694 Bit Score: 45.80 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 740 ALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAA 819
Cdd:PRK15179 95 ALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQAD 174
|
90 100
....*....|....*....|....*...
gi 2124051152 820 ACYERMLEISPDNTEIIYRQGKALERNG 847
Cdd:PRK15179 175 ACFERLSRQHPEFENGYVGWAQSLTRRG 202
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
667-731 |
1.48e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 41.17 E-value: 1.48e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 667 YQKGLIFERLDRNEKAVECYQKALDLD---PQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNS 731
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
815-901 |
1.49e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 45.55 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 815 YEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKLEKYQLAIDCYNKAL 894
Cdd:PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97
|
....*..
gi 2124051152 895 EYDPDNA 901
Cdd:PLN03088 98 SLAPGDS 104
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
387-420 |
1.53e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.71 E-value: 1.53e-04
10 20 30
....*....|....*....|....*....|....
gi 2124051152 387 VKIWYEKALSLDKLGKYETAIECYDEVLETEPGH 420
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| pgaA |
PRK10049 |
outer membrane protein PgaA; Provisional |
704-804 |
1.62e-04 |
|
outer membrane protein PgaA; Provisional
Pssm-ID: 236644 [Multi-domain] Cd Length: 765 Bit Score: 45.86 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 704 ASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDSEPE-NHeaLRNRAVALSKSNKSE 782
Cdd:PRK10049 56 AVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDkAN--LLALAYVYKRAGRHW 133
|
90 100
....*....|....*....|..
gi 2124051152 783 DALADYDRIIELEPDNTQILAE 804
Cdd:PRK10049 134 DELRAMTQALPRAPQTQQYPTE 155
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
495-692 |
1.64e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 44.93 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 495 KAFALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELGKHAEASDCYNQTLQIDPDYSAARFkLseNLGQSSTEA 574
Cdd:cd24142 6 KAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEKY-L--YLGQLSGGE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 575 svsESVKYISMDANPVQALSGGfwsyLLNHKYANSNDESELSEDLNffspeFGYdapwSGKAAIY-SKLGMYEDA----L 649
Cdd:cd24142 83 ---EALQYYEKGIEILEEELQA----LQAASAEAEEEAEELKRKLS-----SAL----CALAEIYmTDLCDEPDAeqrcE 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2124051152 650 TCYDMVLEISPSSSDAWYQKGLIfeRL--DRNEKAVECYQKALDL 692
Cdd:cd24142 147 ELITKALELDPTNPEALQTLASL--RIsqQRPDEAKEALRRSLEL 189
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
811-847 |
1.65e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.15 E-value: 1.65e-04
10 20 30
....*....|....*....|....*....|....*..
gi 2124051152 811 ELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNG 847
Cdd:pfam13414 6 EQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
425-485 |
2.03e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 40.78 E-value: 2.03e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 425 YMKGLDLDKLGRYKEAIECYDRALKLDSR---HAKVWYKKGLDSSKIKDYDSAVKSYDKALKID 485
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
869-933 |
2.19e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.83 E-value: 2.19e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051152 869 AYNNKGFALYKLEKYQLAIDCYNKALE-----YDPDN---AATLYLQGCAYLTISSNKAALNCFDRVVQLKPD 933
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEiarrlLGPDHpltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
744-858 |
2.19e-04 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 42.67 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 744 LGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSnkseDALAD--YDRIIE-----LEPDNTQILAEKASLFEELGRYE 816
Cdd:smart01043 3 VDRFERLVAAARAALAADPEAALALLEAALALYRG----PLLADvpDEDWAEaererLRELRLEALEALAEALLALGRHE 78
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2124051152 817 EAAACYERMLEISPDNtEIIYRQ-GKALERNGDFEGAIGCYDR 858
Cdd:smart01043 79 EALALLERLLALDPLR-ERLHRLlMRALYRAGRRAEALRAYRR 120
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
84-113 |
2.24e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 39.43 E-value: 2.24e-04
10 20 30
....*....|....*....|....*....|
gi 2124051152 84 AWYGKGRSLAELGEYEEAINCYEKALSTFP 113
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELDP 32
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
232-350 |
2.60e-04 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 43.87 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 232 GDYEAAVDCYDKAISFNPDMVNAWHKKGINLERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYD- 310
Cdd:TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEq 124
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2124051152 311 --EILTYnPGNSEAWYSKGSLLNKAGKYDAAIACFDKALNPD 350
Cdd:TIGR02521 125 aiEDPLY-PQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
266-329 |
2.83e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 40.26 E-value: 2.83e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 266 GAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEAWYSKGSL 329
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
664-695 |
3.16e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 39.04 E-value: 3.16e-04
10 20 30
....*....|....*....|....*....|..
gi 2124051152 664 DAWYQKGLIFERLDRNEKAVECYQKALDLDPQ 695
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
218-251 |
3.43e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.97 E-value: 3.43e-04
10 20 30
....*....|....*....|....*....|....
gi 2124051152 218 SELWYQKGAILDKFGDYEAAVDCYDKAISFNPDM 251
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
232-290 |
3.45e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 39.90 E-value: 3.45e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2124051152 232 GDYEAAVDCYDKAISFNPDMVNAWHKKGINLERVGAYEEALACYDFVLLSEPENLDALQ 290
Cdd:pfam13371 9 EDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDAEA 67
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
84-113 |
3.46e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.97 E-value: 3.46e-04
10 20 30
....*....|....*....|....*....|
gi 2124051152 84 AWYGKGRSLAELGEYEEAINCYEKALSTFP 113
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
762-865 |
3.73e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 43.33 E-value: 3.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 762 PENHEALrnrAVALSKSNKSEDALADYDRIIE-LEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNT----EII 836
Cdd:COG4700 89 VQNRVRL---ADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKssdaHLL 165
|
90 100
....*....|....*....|....*....
gi 2124051152 837 YrqGKALERNGDFEGAIGCYDRILELNPG 865
Cdd:COG4700 166 Y--ARALEALGDLEAAEAELEALARRYSG 192
|
|
| ANAPC3 |
pfam12895 |
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ... |
811-893 |
4.11e-04 |
|
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.
Pssm-ID: 463743 [Multi-domain] Cd Length: 82 Bit Score: 40.31 E-value: 4.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 811 ELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRIlELNPGDVDAYNNKGFALYKLEKYQLAIDCY 890
Cdd:pfam12895 1 DQHQYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKA-KLNGSSLGCRYLFAQCLLKLKKYDEALDAL 79
|
...
gi 2124051152 891 NKA 893
Cdd:pfam12895 80 GKA 82
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
320-350 |
4.29e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.56 E-value: 4.29e-04
10 20 30
....*....|....*....|....*....|...
gi 2124051152 320 SEAWYSKGSLLNKAGKYDAAIACFDKAL--NPD 350
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALelNPN 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
296-347 |
4.91e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.63 E-value: 4.91e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 2124051152 296 LENLGRIDEALKCYDEILTYN---PGNSEAWYSKGSLLNKAGKYDAAIACFDKAL 347
Cdd:pfam13432 7 ALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAAL 61
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
498-537 |
5.02e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.61 E-value: 5.02e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 2124051152 498 ALAKLGEYESSLKCYNKVLDAVPDSADVWYNKGLVLDELG 537
Cdd:pfam13414 3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
745-808 |
5.57e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 39.10 E-value: 5.57e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 745 GRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELEPDNTQILAEKASL 808
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
90-184 |
5.67e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.75 E-value: 5.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 90 RSLAELGEYEEAINCYEKALSTFPvsSGSWSDK-----GDELFKLKKYVEAINCYDK---SFAADTYVSTVWYQKALASE 161
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYP--NSPLAPDalywlGEAYYALGDYDEAAEAFEKllkRYPDSPKAPDALLKLGLSYL 78
|
90 100
....*....|....*....|...
gi 2124051152 162 KMGLDEETLASYNKSIELNSNSS 184
Cdd:COG1729 79 ELGDYDKARATLEELIKKYPDSE 101
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
835-895 |
6.19e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.68 E-value: 6.19e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2124051152 835 IIYRQGKALERNGDFEGAIGCYDRILEL--------NPGDVDAYNNKGFALYKLEKYQLAIDCYNKALE 895
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
632-661 |
7.66e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 7.66e-04
10 20 30
....*....|....*....|....*....|
gi 2124051152 632 WSGKAAIYSKLGMYEDALTCYDMVLEISPS 661
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
677-750 |
8.02e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 42.85 E-value: 8.02e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 677 DRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEA 750
Cdd:PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
782-835 |
8.10e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 38.72 E-value: 8.10e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 782 EDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEI 835
Cdd:pfam14559 5 AEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
189-250 |
8.27e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.86 E-value: 8.27e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2124051152 189 MQGTAYIGLEQYKEAMEAFDRAL---NITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPD 250
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
636-786 |
8.38e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.56 E-value: 8.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 636 AAIYSKLGMYEDALTCYDMVLEiSPSSSDAWYQKGLI---FErLDRNEKAVECYQKALDLDPQ--SSTA--WYGIAstVS 708
Cdd:COG4700 96 ADALLELGRYDEAIELYEEALT-GIFADDPHILLGLAqalFE-LGRYAEALETLEKLIAKNPDfkSSDAhlLYARA--LE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 709 DLGRLEEAISYYdQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLDsEPEN---HEALRNRAVAlsksNKSEDAL 785
Cdd:COG4700 172 ALGDLEAAEAEL-EALARRYSGPEARYRYAKFLARQGRTAEAKELLEEILD-EAKHmpkHYRRLNREWI----REAKKLL 245
|
.
gi 2124051152 786 A 786
Cdd:COG4700 246 K 246
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
387-420 |
8.47e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 8.47e-04
10 20 30
....*....|....*....|....*....|....
gi 2124051152 387 VKIWYEKALSLDKLGKYETAIECYDEVLETEPGH 420
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
70-102 |
8.73e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 37.91 E-value: 8.73e-04
10 20 30
....*....|....*....|....*....|...
gi 2124051152 70 CYNDALDIDPNSSLAWYGKGRSLAELGEYEEAI 102
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
709-764 |
8.95e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.86 E-value: 8.95e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2124051152 709 DLGRLEEAISYYDQVLALNSS---NSEALLGKGIALANLGRYEEAVSCYTTLLDSEPEN 764
Cdd:pfam13432 9 RAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| TPR_15 |
pfam13429 |
Tetratricopeptide repeat; |
666-786 |
8.95e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433199 [Multi-domain] Cd Length: 279 Bit Score: 42.34 E-value: 8.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 666 WYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLG 745
Cdd:pfam13429 148 WLARAEYYRQTGEPDAALRDYRRALALAPASTELRAALLWFLIDLGRRAELRPALAAWRARAETDADLWGPLAAAYLRLG 227
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2124051152 746 RYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALA 786
Cdd:pfam13429 228 RPRKALPYLRKQAASNRNDPLWLLAYADALEQAGRADAAWR 268
|
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
673-790 |
9.33e-04 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 40.75 E-value: 9.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 673 FERL---------DRNEKAVECYQKALDLdpqsstaWYGIA-STVSDLGRLEEAISYYDQVLAlnssnsEALLGKGIALA 742
Cdd:smart01043 6 FERLvaaaraalaADPEAALALLEAALAL-------YRGPLlADVPDEDWAEAERERLRELRL------EALEALAEALL 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2124051152 743 NLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDR 790
Cdd:smart01043 73 ALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRR 120
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
493-557 |
9.58e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.86 E-value: 9.58e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 493 YGKAFALAKLGEYESSLKCYNKVLDA---VPDSADVWYNKGLVLDELGKHAEASDCYNQTLQIDPDYS 557
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARfpeSPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
308-341 |
9.73e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 37.52 E-value: 9.73e-04
10 20 30
....*....|....*....|....*....|....
gi 2124051152 308 CYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIA 341
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
937-967 |
1.00e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 1.00e-03
10 20 30
....*....|....*....|....*....|.
gi 2124051152 937 AWYNKGFINNMMGNTEEAILCYDSALAIDPN 967
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
867-899 |
1.04e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 37.38 E-value: 1.04e-03
10 20 30
....*....|....*....|....*....|...
gi 2124051152 867 VDAYNNKGFALYKLEKYQLAIDCYNKALEYDPD 899
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
173-250 |
1.14e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 42.47 E-value: 1.14e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 173 YNKSIELNSNSSRSLQMQGTAYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPD 250
Cdd:PLN03088 25 YTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
421-487 |
1.16e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.91 E-value: 1.16e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2124051152 421 AVVWYMKGLDLDKLGRYKEAIECYDRALKLDSR--------HAKVWYKKGLDSSKIKDYDSAVKSYDKALKIDKN 487
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRllgpdhplTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
692-775 |
1.21e-03 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 40.36 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 692 LDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSNSEALLGKGIALANLGRYEEAVSCYTTLLD--SEPENHEALR 769
Cdd:TIGR02552 46 YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEicGENPEYSELK 125
|
....*.
gi 2124051152 770 NRAVAL 775
Cdd:TIGR02552 126 ERAEAM 131
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
633-722 |
1.31e-03 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 40.81 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 633 SGKAAIYSKLGM-------YEDALTCYDMVLEISPSSSD---AWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYG 702
Cdd:PRK02603 32 AKEAFVYYRDGMsaqadgeYAEALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111
|
90 100
....*....|....*....|....*..
gi 2124051152 703 IA-------STVSDLGRLEEAISYYDQ 722
Cdd:PRK02603 112 IAviyhkrgEKAEEAGDQDEAEALFDK 138
|
|
| TPR_5 |
pfam12688 |
Tetratrico peptide repeat; BH0479 of Bacillus halodurans is a hypothetical protein which ... |
665-775 |
1.33e-03 |
|
Tetratrico peptide repeat; BH0479 of Bacillus halodurans is a hypothetical protein which contains a tetratrico peptide repeat (TPR) structural motif. The TPR motif is often involved in mediating protein-protein interactions. This protein is likely to function as a dimer. The first 48 amino acids are not present in the clone construct. This Pfam entry includes tetratricopeptide-like repeats not detected by the pfam00515, pfam07719, pfam07720 and pfam07221 models.
Pssm-ID: 403783 [Multi-domain] Cd Length: 119 Bit Score: 39.82 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 665 AWYQKGLIFERLDRNEKAVECYQKALD---LDPQSSTAWYGIASTVSDLGRLEEAISYYDQVLALNSSN-SEALLG-KGI 739
Cdd:pfam12688 3 AAFERAGAFDSTGHPDRAVPLYRRALAnglDGSRRRQATIQLASSLRNLGEPEDALALLRAEATDPGDElDDALAAfLAL 82
|
90 100 110
....*....|....*....|....*....|....*..
gi 2124051152 740 ALANLGRYEEAVS-CYTTLLDSEPENHEALRNRAVAL 775
Cdd:pfam12688 83 CLADLGREREAVSiLLDALAPHLPRYQRSMTNYAREL 119
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
523-555 |
1.45e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.12 E-value: 1.45e-03
10 20 30
....*....|....*....|....*....|...
gi 2124051152 523 ADVWYNKGLVLDELGKHAEASDCYNQTLQIDPD 555
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
53-113 |
1.52e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.09 E-value: 1.52e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2124051152 53 DKGHALHSLREYDLSIDCYNDALDIDPNSSL---AWYGKGRSLAELGEYEEAINCYEKALSTFP 113
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFPESPDaaaALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
294-421 |
1.52e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 294 LCLENLGRIDEALKCYDEILTYNPGNS---EAWYSKGSLLNKAGKYDAAIACFDKALN--PDTgiqveeiggelleklsv 368
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKryPDS----------------- 63
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2124051152 369 yeaslscysetpefeSPVVKIWYEKALSLDKLGKYETAIECYDEVLETEPGHA 421
Cdd:COG1729 64 ---------------PKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSE 101
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
288-348 |
1.65e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.14 E-value: 1.65e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2124051152 288 ALQGKGLCLENLGRIDEALKCYDEIL--------TYNPGNSEAWYSKGSLLNKAGKYDAAIACFDKALN 348
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
287-319 |
1.82e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.02 E-value: 1.82e-03
10 20 30
....*....|....*....|....*....|...
gi 2124051152 287 DALQGKGLCLENLGRIDEALKCYDEILTYNPGN 319
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
428-463 |
1.99e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.07 E-value: 1.99e-03
10 20 30
....*....|....*....|....*....|....*.
gi 2124051152 428 GLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGL 463
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGL 36
|
|
| DnrI |
COG3629 |
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ... |
655-813 |
2.13e-03 |
|
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];
Pssm-ID: 442847 [Multi-domain] Cd Length: 244 Bit Score: 40.98 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 655 VLEISPSSSDAWyqkglIFERL--------DRNEKAVECYQKALDLdpqsstaWYGIA-STVSDLGRLEEAISYYDQVLA 725
Cdd:COG3629 90 RLDVDPDEVDLH-----RFERLvararaaaGDPAAAAALLREALAL-------WRGPPlAGLPFEPWLEAERARLEELRL 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 726 lnssnsEALLGKGIALANLGRYEEAVSCYTTLLDSEPENHEALRNRAVALSKSNKSEDALADYDRIIELepdntqilaek 805
Cdd:COG3629 158 ------AALEALAEALLALGRHAEALAELRRLVAAHPLRERLHRLLMRALYRAGRRAEALAAYRRLRRR----------- 220
|
....*...
gi 2124051152 806 asLFEELG 813
Cdd:COG3629 221 --LADELG 226
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
198-273 |
2.24e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 41.70 E-value: 2.24e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2124051152 198 EQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPDMVNAWHKKGINLERVGAYEEALA 273
Cdd:PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
193-250 |
2.25e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 37.97 E-value: 2.25e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 193 AYIGLEQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPD 250
Cdd:pfam13371 4 IYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPD 61
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
855-887 |
2.27e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 36.75 E-value: 2.27e-03
10 20 30
....*....|....*....|....*....|...
gi 2124051152 855 CYDRILELNPGDVDAYNNKGFALYKLEKYQLAI 887
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
55-96 |
2.58e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 36.68 E-value: 2.58e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2124051152 55 GHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELG 96
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
810-880 |
2.64e-03 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 40.04 E-value: 2.64e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2124051152 810 EELGRYEEAAAcyermLEISP-DNTEIIYRQGKALERNGDFEGAIGCYDRILELNPGDVDAYNNKGFALYKL 880
Cdd:PRK02603 53 EALENYEEALK-----LEEDPnDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR 119
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
206-238 |
2.65e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 36.37 E-value: 2.65e-03
10 20 30
....*....|....*....|....*....|...
gi 2124051152 206 AFDRALNITPDNSELWYQKGAILDKFGDYEAAV 238
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
455-488 |
2.67e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 2.67e-03
10 20 30
....*....|....*....|....*....|....
gi 2124051152 455 AKVWYKKGLDSSKIKDYDSAVKSYDKALKIDKNY 488
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
320-347 |
2.73e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.27 E-value: 2.73e-03
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
782-866 |
2.88e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 41.31 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 782 EDALADYDRIIELEPDNTQILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKALERNGDFEGAIGCYDRILE 861
Cdd:PLN03088 19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS 98
|
....*
gi 2124051152 862 LNPGD 866
Cdd:PLN03088 99 LAPGD 103
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
802-831 |
3.06e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 36.36 E-value: 3.06e-03
10 20 30
....*....|....*....|....*....|
gi 2124051152 802 LAEKASLFEELGRYEEAAACYERMLEISPD 831
Cdd:pfam13176 2 LLNLGRIYRKLGDYDEAISLYEQALALAKD 31
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
470-503 |
3.23e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 36.30 E-value: 3.23e-03
10 20 30
....*....|....*....|....*....|....
gi 2124051152 470 DYDSAVKSYDKALKIDKNYTLAWYGKAFALAKLG 503
Cdd:pfam13414 9 KYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
638-697 |
3.41e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 37.32 E-value: 3.41e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051152 638 IYSKLGMYEDALTCYDMVLE---ISPSSSDAWYQKGLIFERLDRNEKAVECYQKALDLDPQSS 697
Cdd:pfam13432 6 AALRAGDYDDAAAALEAALArfpESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
664-711 |
3.46e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 36.30 E-value: 3.46e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 2124051152 664 DAWYQKGliferldRNEKAVECYQKALDLDPQSSTAWYGIASTVSDLG 711
Cdd:pfam13414 2 DAYYEQG-------KYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
219-250 |
3.58e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.84 E-value: 3.58e-03
10 20 30
....*....|....*....|....*....|..
gi 2124051152 219 ELWYQKGAILDKFGDYEAAVDCYDKAISFNPD 250
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
905-969 |
3.69e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.93 E-value: 3.69e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051152 905 YLQGCAYLTISSNKAALNCFDRVV---QLKPDCITAWYNKGFINNMMGNTEEAILCYDSALAIDPNSP 969
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| TPR_14 |
pfam13428 |
Tetratricopeptide repeat; |
800-842 |
3.94e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463874 [Multi-domain] Cd Length: 44 Bit Score: 36.25 E-value: 3.94e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 2124051152 800 QILAEKASLFEELGRYEEAAACYERMLEISPDNTEIIYRQGKA 842
Cdd:pfam13428 2 EALLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
766-798 |
4.16e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 4.16e-03
10 20 30
....*....|....*....|....*....|...
gi 2124051152 766 EALRNRAVALSKSNKSEDALADYDRIIELEPDN 798
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
287-319 |
4.17e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 4.17e-03
10 20 30
....*....|....*....|....*....|...
gi 2124051152 287 DALQGKGLCLENLGRIDEALKCYDEILTYNPGN 319
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
632-661 |
4.34e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 4.34e-03
10 20 30
....*....|....*....|....*....|
gi 2124051152 632 WSGKAAIYSKLGMYEDALTCYDMVLEISPS 661
Cdd:smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
219-250 |
4.76e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.58 E-value: 4.76e-03
10 20 30
....*....|....*....|....*....|..
gi 2124051152 219 ELWYQKGAILDKFGDYEAAVDCYDKAISFNPD 250
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
84-110 |
5.46e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.45 E-value: 5.46e-03
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
71-168 |
5.46e-03 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 39.86 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 71 YNDALDIDPNSSLawYGKGRSLAELGEYEEAINCYEKALSTFPvsSGSWSDK-----GDELFKLKKYVEAINCYD---KS 142
Cdd:COG4105 23 FKKALKSWDAEEL--YEEAKEALEKGDYEKAIKLFEELEPRYP--GSPYAEQaqlmlAYAYYKQGDYEEAIAAADrfiKL 98
|
90 100
....*....|....*....|....*.
gi 2124051152 143 FAADTYVSTVWYQKALASEKMGLDEE 168
Cdd:COG4105 99 YPNSPNADYAYYLRGLSYYEQSPDSD 124
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
949-982 |
5.84e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 35.53 E-value: 5.84e-03
10 20 30
....*....|....*....|....*....|....
gi 2124051152 949 GNTEEAILCYDSALAIDPNSPSTLYNKRFALYNL 982
Cdd:pfam13414 8 GKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
834-865 |
5.98e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.58 E-value: 5.98e-03
10 20 30
....*....|....*....|....*....|..
gi 2124051152 834 EIIYRQGKALERNGDFEGAIGCYDRILELNPG 865
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
455-488 |
6.12e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.50 E-value: 6.12e-03
10 20 30
....*....|....*....|....*....|....
gi 2124051152 455 AKVWYKKGLDSSKIKDYDSAVKSYDKALKIDKNY 488
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_14 |
pfam13428 |
Tetratricopeptide repeat; |
664-704 |
6.20e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463874 [Multi-domain] Cd Length: 44 Bit Score: 35.86 E-value: 6.20e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2124051152 664 DAWYQKGLIFERLDRNEKAVECYQKALDLDPQSSTAWYGIA 704
Cdd:pfam13428 2 EALLALARALLALGDPDEALALLERALALDPDDPEAWLALA 42
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
431-542 |
6.59e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.48 E-value: 6.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 431 LDKLGRYKEAIECYDRALKLDSRH-AKVWYKKGLDSSKIKDYDSAVKSYDKALKIDKNYT-----LAwYGKafALAKLGE 504
Cdd:COG4700 99 LLELGRYDEAIELYEEALTGIFADdPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKssdahLL-YAR--ALEALGD 175
|
90 100 110
....*....|....*....|....*....|....*...
gi 2124051152 505 YESSLKCYnKVLDAVPDSADVWYNKGLVLDELGKHAEA 542
Cdd:COG4700 176 LEAAEAEL-EALARRYSGPEARYRYAKFLARQGRTAEA 212
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
403-481 |
6.69e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 40.16 E-value: 6.69e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2124051152 403 YETAIECYDEVLETEPGHAVVWYMKGLDLDKLGRYKEAIECYDRALKLDSRHAKVWYKKGLDSSKIKDYDSAVKSYDKA 481
Cdd:PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKG 96
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
198-250 |
6.99e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.02 E-value: 6.99e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2124051152 198 EQYKEAMEAFDRALNITPDNSELWYQKGAILDKFGDYEAAVDCYDKAISFNPD 250
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPD 54
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
246-347 |
7.11e-03 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 38.04 E-value: 7.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 246 SFNPDMVNAWHKKGINLERVGAYEEALACYDFVLLSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNSEAWYS 325
Cdd:TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90
|
90 100
....*....|....*....|..
gi 2124051152 326 KGSLLNKAGKYDAAIACFDKAL 347
Cdd:TIGR02552 91 AAECLLALGEPESALKALDLAI 112
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
800-832 |
7.15e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.09 E-value: 7.15e-03
10 20 30
....*....|....*....|....*....|...
gi 2124051152 800 QILAEKASLFEELGRYEEAAACYERMLEISPDN 832
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
511-542 |
7.76e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 35.21 E-value: 7.76e-03
10 20 30
....*....|....*....|....*....|..
gi 2124051152 511 CYNKVLDAVPDSADVWYNKGLVLDELGKHAEA 542
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETA 32
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
423-451 |
8.26e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.07 E-value: 8.26e-03
10 20
....*....|....*....|....*....
gi 2124051152 423 VWYMKGLDLDKLGRYKEAIECYDRALKLD 451
Cdd:pfam13181 3 AYYNLGLIYLKLGDYEEAKEYYEKALELD 31
|
|
| OM_YfiO |
TIGR03302 |
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ... |
86-160 |
9.15e-03 |
|
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274513 [Multi-domain] Cd Length: 235 Bit Score: 39.07 E-value: 9.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051152 86 YGKGRSLAELGEYEEAINCYEKALSTFPvsSGSWS-----DKGDELFKLKKYVEAINCYD---KSFAADTYVSTVWYQKA 157
Cdd:TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRYP--FSPYAeqaqlDLAYAYYKSGDYAEAIAAADrfiRLHPNHPDADYAYYLRG 114
|
...
gi 2124051152 158 LAS 160
Cdd:TIGR03302 115 LSN 117
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
55-104 |
9.21e-03 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 37.66 E-value: 9.21e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2124051152 55 GHALHSLREYDLSIDCYNDALDIDPNSSLAWYGKGRSLAELGEYEEAINC 104
Cdd:TIGR02552 58 AACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKA 107
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
638-676 |
9.74e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 35.14 E-value: 9.74e-03
10 20 30
....*....|....*....|....*....|....*....
gi 2124051152 638 IYSKLGMYEDALTCYDMVLEISPSSSDAWYQKGLIFERL 676
Cdd:pfam13414 3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
300-350 |
9.86e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 35.64 E-value: 9.86e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 2124051152 300 GRIDEALKCYDEILTYNPGNSEAWYSKGSLLNKAGKYDAAIACFDKALNPD 350
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAAD 52
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
257-320 |
9.96e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 35.77 E-value: 9.96e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2124051152 257 KKGINLERVGAYEEALACYDFVL---LSEPENLDALQGKGLCLENLGRIDEALKCYDEILTYNPGNS 320
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| |
