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Conserved domains on  [gi|2124051249|ref|WP_226999584|]
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tetratricopeptide repeat protein [Methanosarcina flavescens]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1000094)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
229-425 4.27e-44

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 154.01  E-value: 4.27e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 229 LKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWA 308
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 309 GKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKH 388
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2124051249 389 DEALQNCNQALELKPGFVPALETKVKILSEIQRQKAR 425
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLL 197
BET4 super family cl44255
Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, ...
 154-245 2.99e-03

Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5536:

Pssm-ID: 227823 [Multi-domain]  Cd Length: 328  Bit Score: 39.47  E-value: 2.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 154 MVTKSL------TFHGENYEILPIFLAVRDLYASLpFFEELQYCTERLEKDPQDATALFQKAVLMYktRRFETA------ 221
Cdd:COG5536   131 FITKKLldsdsrNYHVWSYRRWVLRTIEDLFNFSD-LKHELEYTTSLIETDIYNNSAWHHRYIWIE--RRFNRGdvisqk 207

                          90       100       110
                  ....*....|....*....|....*....|
gi 2124051249 222 -----LQLTAQVLKIAPEDHRVW-YNRGVI 245
Cdd:COG5536   208 ylekeLEYIFDKIFTDPDNQSVWgYLRGVS 237
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
229-425 4.27e-44

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 154.01  E-value: 4.27e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 229 LKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWA 308
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 309 GKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKH 388
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2124051249 389 DEALQNCNQALELKPGFVPALETKVKILSEIQRQKAR 425
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLL 197
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 195-403 5.21e-20

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 92.84  E-value: 5.21e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 195 LEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWD 274
Cdd:TIGR02917 152 LAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLL 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 275 NKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRL 354
Cdd:TIGR02917 232 ALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNL 311

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2124051249 355 EEALKIYDKALELAPTEPRlwAARGFVLSEI--GKHDEALQNCNQALELKP 403
Cdd:TIGR02917 312 EQAYQYLNQILKYAPNSHQ--ARRLLASIQLrlGRVDEAIATLSPALGLDP 360
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 204-401 5.44e-09

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 57.25  E-value: 5.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 204 ALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPtfevawdNKGVV---- 279
Cdd:cd24142     2 ELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP-------DGGYEkyly 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 280 LARLGRFEEALETYEKIIlkypgyaeawagkgSILSAL--GREEEAFEAYSSALRIRPDYLEALTSAGSL-LSRLSRLEE 356
Cdd:cd24142    75 LGQLSGGEEALQYYEKGI--------------EILEEElqALQAASAEAEEEAEELKRKLSSALCALAEIyMTDLCDEPD 140

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2124051249 357 A----LKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALEL 401
Cdd:cd24142   141 AeqrcEELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
TPR_1 pfam00515
Tetratricopeptide repeat;
237-269 4.65e-07

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 45.87  E-value: 4.65e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2124051249 237 RVWYNRGVILSELGRLEEALAAYDRTIELEPTF 269
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 242-294 1.76e-05

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 44.60  E-value: 1.76e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2124051249  242 RGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYE 294
Cdd:smart01043  67 LAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYR 119
PLN02789 PLN02789
farnesyltranstransferase
 217-331 9.28e-04

farnesyltranstransferase


Pssm-ID: 215423 [Multi-domain]  Cd Length: 320  Bit Score: 40.88  E-value: 9.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 217 RFETALQLTAQVLKIAPEDHRVWYNRGVILSELG-RLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGR--FEEALETY 293
Cdd:PLN02789   52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDaDLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPdaANKELEFT 131

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2124051249 294 EKIILKYPGYAEAWAGKGSILSALGREEEAFEaYSSAL 331
Cdd:PLN02789  132 RKILSLDAKNYHAWSHRQWVLRTLGGWEDELE-YCHQL 168
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 212-392 2.33e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 40.29  E-value: 2.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 212 MYKTRRFETALQLTAQVLKI-----APEDHRVWY---NRGVILSELGRLEEA-------LAAYDRTIELEP----TFEVA 272
Cdd:NF040586  402 LYLRGDYESARDLAERALERwrerlGPDDRQTLRlrfHLANALRSLGRYEEAreldedtLERQRRVLGLGEdhphTLMTA 481

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 273 wDNKGVVLARLGRFEEALEtyekiilkypgyaeawagkgsilsalgREEEAFEAYSSALriRPDYLEALTSAGSL-LSR- 350
Cdd:NF040586  482 -GGLGADLRALGRFREALE---------------------------LDEETLERHRRVF--GEDHPRTLRAANNLaVSLr 531

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2124051249 351 -LSRLEEALKIYDKALE-----LAPTEPRLWAAR---GFVLSEIGKHDEAL 392
Cdd:NF040586  532 lLGDYREALELDREVLRrrrrvLGPDHPRTLLSAnnlARDLRELGRYAEAL 582
BET4 COG5536
Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, ...
 154-245 2.99e-03

Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227823 [Multi-domain]  Cd Length: 328  Bit Score: 39.47  E-value: 2.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 154 MVTKSL------TFHGENYEILPIFLAVRDLYASLpFFEELQYCTERLEKDPQDATALFQKAVLMYktRRFETA------ 221
Cdd:COG5536   131 FITKKLldsdsrNYHVWSYRRWVLRTIEDLFNFSD-LKHELEYTTSLIETDIYNNSAWHHRYIWIE--RRFNRGdvisqk 207

                          90       100       110
                  ....*....|....*....|....*....|
gi 2124051249 222 -----LQLTAQVLKIAPEDHRVW-YNRGVI 245
Cdd:COG5536   208 ylekeLEYIFDKIFTDPDNQSVWgYLRGVS 237
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
229-425 4.27e-44

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 154.01  E-value: 4.27e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 229 LKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWA 308
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 309 GKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKH 388
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2124051249 389 DEALQNCNQALELKPGFVPALETKVKILSEIQRQKAR 425
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLL 197
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
195-393 9.62e-41

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 145.15  E-value: 9.62e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 195 LEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWD 274
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 275 NKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRL 354
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2124051249 355 EEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQ 393
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLAL 199
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 202-402 6.53e-36

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 139.74  E-value: 6.53e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 202 ATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLA 281
Cdd:COG3914    44 ALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLL 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 282 RLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIY 361
Cdd:COG3914   124 ALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAY 203

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2124051249 362 DKALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALELK 402
Cdd:COG3914   204 RRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
188-402 2.40e-34

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 128.20  E-value: 2.40e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 188 LQYCTERLEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEP 267
Cdd:COG0457    28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDP 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 268 TFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSL 347
Cdd:COG0457   108 DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2124051249 348 LSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALELK 402
Cdd:COG0457   188 LALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 168-424 1.32e-31

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 121.76  E-value: 1.32e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 168 ILPIFLAVRDLYASLPFFEE------LQYCTERLEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYN 241
Cdd:COG2956     2 LLPVAAALGWYFKGLNYLLNgqpdkaIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 242 RGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREE 321
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 322 EAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALEL 401
Cdd:COG2956   162 EAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL 241

                         250       260
                  ....*....|....*....|...
gi 2124051249 402 KPGfVPALETKVKILSEIQRQKA 424
Cdd:COG2956   242 DPS-DDLLLALADLLERKEGLEA 263
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 193-374 8.65e-31

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 124.72  E-value: 8.65e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 193 ERLEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVA 272
Cdd:COG3914    69 AAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 273 WDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLS 352
Cdd:COG3914   149 YLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC 228

                         170       180
                  ....*....|....*....|..
gi 2124051249 353 RLEEALKIYDKALELAPTEPRL 374
Cdd:COG3914   229 DWEVYDRFEELLAALARGPSEL 250
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 221-409 5.68e-30

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 122.41  E-value: 5.68e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 221 ALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVV---------LARLGRFEEALE 291
Cdd:COG3914    20 AAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAallelaallLQALGRYEEALA 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 292 TYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTE 371
Cdd:COG3914   100 LYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDN 179

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2124051249 372 PRLWAARGFVLSEIGKHDEALQNCNQALELKPGFVPAL 409
Cdd:COG3914   180 AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 200-337 2.69e-27

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 105.66  E-value: 2.69e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 200 QDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVV 279
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051249 280 LARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDY 337
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 234-371 4.47e-26

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 102.58  E-value: 4.47e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 234 EDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSI 313
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051249 314 LSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTE 371
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 186-326 4.47e-24

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 104.69  E-value: 4.47e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 186 EELQYCTERLEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIEL 265
Cdd:COG3914    96 EALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALEL 175

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2124051249 266 EPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWagkGSILSALGREEEAFEA 326
Cdd:COG3914   176 DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH---SNLLFALRQACDWEVY 233
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 272-405 5.59e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 96.80  E-value: 5.59e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 272 AWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRL 351
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2124051249 352 SRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALELKPGF 405
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 171-366 6.56e-24

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 100.19  E-value: 6.56e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 171 IFLAVRDLYASLPFFEELqycterLEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELG 250
Cdd:COG2956    85 DYLKAGLLDRAEELLEKL------LELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 251 RLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSA 330
Cdd:COG2956   159 DYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKA 238

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2124051249 331 LRIRPDYLEALTsAGSLLSRLSRLEEALKIYDKALE 366
Cdd:COG2956   239 LELDPSDDLLLA-LADLLERKEGLEAALALLERQLR 273
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 288-408 9.17e-21

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 87.37  E-value: 9.17e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 288 EALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALEL 367
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2124051249 368 APTEPRLWAARGFVLSEIGKHDEALQNCNQALELKPGFVPA 408
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 195-403 5.21e-20

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 92.84  E-value: 5.21e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 195 LEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWD 274
Cdd:TIGR02917 152 LAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLL 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 275 NKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRL 354
Cdd:TIGR02917 232 ALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNL 311

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2124051249 355 EEALKIYDKALELAPTEPRlwAARGFVLSEI--GKHDEALQNCNQALELKP 403
Cdd:TIGR02917 312 EQAYQYLNQILKYAPNSHQ--ARRLLASIQLrlGRVDEAIATLSPALGLDP 360
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 254-378 9.31e-20

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 84.67  E-value: 9.31e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 254 EALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRI 333
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2124051249 334 RPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRLWAAR 378
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLE 125
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 186-316 5.02e-19

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 82.75  E-value: 5.02e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 186 EELQYCTERLEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIEL 265
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2124051249 266 EPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSA 316
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
193-366 1.96e-18

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 83.81  E-value: 1.96e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 193 ERLEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVA 272
Cdd:COG4785    64 DRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 273 WDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGsILSALGREEEAFEayssalRIRPDYLEALTSAGsllsrls 352
Cdd:COG4785   144 YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLY-LAERKLDPEKALA------LLLEDWATAYLLQG------- 209

                         170
                  ....*....|....
gi 2124051249 353 RLEEALKIYDKALE 366
Cdd:COG4785   210 DTEEARELFKLALA 223
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
232-398 2.14e-18

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 83.43  E-value: 2.14e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 232 APEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALEtyekiilkypgyaeawagkg 311
Cdd:COG4785    69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALE-------------------- 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 312 silsalgreeeafeAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGkHDEA 391
Cdd:COG4785   129 --------------DFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD-PEKA 193


                  ....*..
gi 2124051249 392 LQNCNQA 398
Cdd:COG4785   194 LALLLED 200
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 188-303 2.86e-18

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 81.01  E-value: 2.86e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 188 LQYCTERLEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEP 267
Cdd:COG4783    24 EALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDP 103

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2124051249 268 TFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGY 303
Cdd:COG4783   104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 221-336 6.12e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 79.66  E-value: 6.12e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 221 ALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKY 300
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2124051249 301 PGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPD 336
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 198-409 8.23e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 85.91  E-value: 8.23e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 198 DPQDATALFQKAVLMykTRRFETAL-QLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNK 276
Cdd:TIGR02917  88 PKNQVLPLLARAYLL--QGKFQQVLdELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGL 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 277 GVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEE 356
Cdd:TIGR02917 166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2124051249 357 ALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALELKPGFVPAL 409
Cdd:TIGR02917 246 AEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPAL 298
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 171-334 3.14e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 81.31  E-value: 3.14e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 171 IFLAVRDLYASLPFFEELqycterLEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELG 250
Cdd:COG2956   119 IYEQEGDWEKAIEVLERL------LKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 251 RLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGyAEAWAGKGSILSALGREEEAFEAYSSA 330
Cdd:COG2956   193 DYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQ 271


                  ....
gi 2124051249 331 LRIR 334
Cdd:COG2956   272 LRRH 275
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 188-409 1.79e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 81.67  E-value: 1.79e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 188 LQYCTERLEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEP 267
Cdd:TIGR02917 281 RETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP 360

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 268 TFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSL 347
Cdd:TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS 440

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2124051249 348 LSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALELKPGFVPAL 409
Cdd:TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 195-335 1.83e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 73.46  E-value: 1.83e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 195 LEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWD 274
Cdd:COG5010    13 YLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYY 92

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2124051249 275 NKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRP 335
Cdd:COG5010    93 NLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 304-424 2.32e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 72.53  E-value: 2.32e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 304 AEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLS 383
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2124051249 384 EIGKHDEALQNCNQALELKPGFVPALETKVKILSEIQRQKA 424
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
245-339 5.97e-15

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 70.20  E-value: 5.97e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 245 ILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALEtYEKIILKYPGYAEAWAGKGSILSALGREEEAF 324
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|....*
gi 2124051249 325 EAYSSALRIRPDYLE 339
Cdd:COG3063    80 AYLERALELDPSALR 94
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 217-369 1.01e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 71.53  E-value: 1.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 217 RFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKI 296
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051249 297 ILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAP 369
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 166-301 2.40e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 70.37  E-value: 2.40e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 166 YEILPIFLAVRDLYASLPFFEELQYCTERLEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVI 245
Cdd:COG5010    18 TKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALL 97

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2124051249 246 LSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYP 301
Cdd:COG5010    98 YSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 251-403 3.94e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 69.60  E-value: 3.94e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 251 RLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSA 330
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051249 331 LRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALELKP 403
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
241-403 5.69e-14

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 70.71  E-value: 5.69e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 241 NRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGV------VLARLGRFEEALETYEKIILKYPGYAEAWAGKGSIL 314
Cdd:COG4785     4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALadlalaLAAAALAAAALAAERIDRALALPDLAQLYYERGVAY 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 315 SALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQN 394
Cdd:COG4785    84 DSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIAD 163


                  ....*....
gi 2124051249 395 CNQALELKP 403
Cdd:COG4785   164 LEKALELDP 172
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
313-403 1.59e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 65.96  E-value: 1.59e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 313 ILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKiYDKALELAPTEPRLWAARGFVLSEIGKHDEAL 392
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|.
gi 2124051249 393 QNCNQALELKP 403
Cdd:COG3063    80 AYLERALELDP 90
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 229-421 1.66e-13

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 72.42  E-value: 1.66e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 229 LKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTfevawDNKGVV-LARL----GRFEEALETYEKI-ILKYPG 302
Cdd:TIGR02917  49 LQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-----KNQVLPlLARAyllqGKFQQVLDELPGKtLLDDEG 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 303 YAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRLWAARGFVL 382
Cdd:TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL 203

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2124051249 383 SEIGKHDEALQNCNQALELKPGFVPALETKVKILSEIQR 421
Cdd:TIGR02917 204 LSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
211-301 8.27e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 64.04  E-value: 8.27e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 211 LMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALaAYDRTIELEPTFEVAWDNKGVVLARLGRFEEAL 290
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|.
gi 2124051249 291 ETYEKIILKYP 301
Cdd:COG3063    80 AYLERALELDP 90
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
258-409 1.26e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 66.86  E-value: 1.26e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 258 AYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAyssalrirPDY 337
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL--------PDL 72

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2124051249 338 LEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALELKPGFVPAL 409
Cdd:COG4785    73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAY 144
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 322-409 4.06e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 63.10  E-value: 4.06e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 322 EAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALEL 401
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                  ....*...
gi 2124051249 402 KPGFVPAL 409
Cdd:COG4235    81 DPDNPEAL 88
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 214-409 5.75e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 67.80  E-value: 5.75e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 214 KTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNkgvvLARL----GRFEEA 289
Cdd:TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAAN----LARIdiqeGNPDDA 518

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 290 LETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAP 369
Cdd:TIGR02917 519 IQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2124051249 370 TEPRLWAARGFVLSEIGKHDEALQNCNQALELKPGFVPAL 409
Cdd:TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALAL 638
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 195-404 2.52e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 65.88  E-value: 2.52e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 195 LEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWd 274
Cdd:TIGR02917 662 LELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI- 740

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 275 NKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRl 354
Cdd:TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD- 819

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2124051249 355 EEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALELKPG 404
Cdd:TIGR02917 820 PRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 171-418 2.70e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 65.49  E-value: 2.70e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 171 IFLAVRDLYASLPFFEELqycterLEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELG 250
Cdd:TIGR02917 610 AQLAAGDLNKAVSSFKKL------LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 251 RLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGyAEAWAGKGSILSALGREEEAFEAYSSA 330
Cdd:TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAW 762

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 331 LRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEiGKHDEALQNCNQALELKPGFVPALE 410
Cdd:TIGR02917 763 LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE-LKDPRALEYAERALKLAPNIPAILD 841


                  ....*...
gi 2124051249 411 TKVKILSE 418
Cdd:TIGR02917 842 TLGWLLVE 849
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 195-393 1.40e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 63.56  E-value: 1.40e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 195 LEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWD 274
Cdd:TIGR02917 492 LSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 275 NKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRL 354
Cdd:TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY 651

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2124051249 355 EEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQ 393
Cdd:TIGR02917 652 AKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
195-267 3.28e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 56.72  E-value: 3.28e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051249 195 LEKDPQDATALFQKAVLMYKTRRFETALQLTaQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEP 267
Cdd:COG3063    19 LELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 213-306 6.58e-10

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 56.15  E-value: 6.58e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 213 YKTRRFETALQLTAQVLKIAPEDH---RVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWD---NKGVVLARLGRF 286
Cdd:COG1729     4 LKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDY 83

                          90       100
                  ....*....|....*....|
gi 2124051249 287 EEALETYEKIILKYPGYAEA 306
Cdd:COG1729    84 DKARATLEELIKKYPDSEAA 103
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
347-424 4.52e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 53.25  E-value: 4.52e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051249 347 LLSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQnCNQALELKPGFVPALETKVKILSEIQRQKA 424
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDE 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 285-424 5.33e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.97  E-value: 5.33e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 285 RFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKA 364
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 365 LELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALELKPGFVPALETKVKILSEIQRQKA 424
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 204-401 5.44e-09

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 57.25  E-value: 5.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 204 ALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPtfevawdNKGVV---- 279
Cdd:cd24142     2 ELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP-------DGGYEkyly 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 280 LARLGRFEEALETYEKIIlkypgyaeawagkgSILSAL--GREEEAFEAYSSALRIRPDYLEALTSAGSL-LSRLSRLEE 356
Cdd:cd24142    75 LGQLSGGEEALQYYEKGI--------------EILEEElqALQAASAEAEEEAEELKRKLSSALCALAEIyMTDLCDEPD 140

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2124051249 357 A----LKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALEL 401
Cdd:cd24142   141 AeqrcEELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
192-332 8.46e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 55.69  E-value: 8.46e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 192 TERLEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEV 271
Cdd:COG4785    97 DQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPE 176

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2124051249 272 AWDNKGVVLARLgRFEEALETYEKIILKYPgyaeawagkgsilSALGREEEAFEAYSSALR 332
Cdd:COG4785   177 RALWLYLAERKL-DPEKALALLLEDWATAY-------------LLQGDTEEARELFKLALA 223
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 280-378 4.68e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.15  E-value: 4.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 280 LARLGRFEEALETYEKIILKYPG---YAEAWAGKGSILSALGREEEAFEAYSSALRIRPD---YLEALTSAGSLLSRLSR 353
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGD 82

                          90       100
                  ....*....|....*....|....*
gi 2124051249 354 LEEALKIYDKALELAPTEPRLWAAR 378
Cdd:COG1729    83 YDKARATLEELIKKYPDSEAAKEAR 107
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 215-402 1.39e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 53.83  E-value: 1.39e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 215 TRRFETALQLTaqvlKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYE 294
Cdd:TIGR00990 314 ARAFEKALDLG----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFD 389

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 295 KIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRL 374
Cdd:TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDV 469

                         170       180
                  ....*....|....*....|....*...
gi 2124051249 375 WAARGFVLSEIGKHDEALQNCNQALELK 402
Cdd:TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELE 497
TPR_1 pfam00515
Tetratricopeptide repeat;
237-269 4.65e-07

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 45.87  E-value: 4.65e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2124051249 237 RVWYNRGVILSELGRLEEALAAYDRTIELEPTF 269
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_12 pfam13424
Tetratricopeptide repeat;
272-336 2.31e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 2.31e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051249 272 AWDNKGVVLARLGRFEEALETYEKIIL--------KYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPD 336
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
304-368 3.59e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 44.69  E-value: 3.59e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2124051249 304 AEAWAGKGSILSALGREEEAFEAYSSALRI--------RPDYLEALTSAGSLLSRLSRLEEALKIYDKALELA 368
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALA 75
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
217-323 4.78e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 47.57  E-value: 4.78e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 217 RFETALQLTAQVLK-IAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDN--KGVVLARLGRFEEALETY 293
Cdd:COG4700   104 RYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKSSDAHllYARALEALGDLEAAEAEL 183

                          90       100       110
                  ....*....|....*....|....*....|
gi 2124051249 294 EKIILKYPGYaEAWAGKGSILSALGREEEA 323
Cdd:COG4700   184 EALARRYSGP-EARYRYAKFLARQGRTAEA 212
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 339-403 9.06e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 47.24  E-value: 9.06e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2124051249 339 EALTSAGSLLSRlSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALELKP 403
Cdd:cd24142     2 ELLEKAEELLDQ-GNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP 65
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
240-366 1.04e-05

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 46.80  E-value: 1.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 240 YNR---GVILSELGRLEEALAAYDRTIELEPTFEVAWDNKgvvLAR----LGRFEEALETYEKIILKYPGYAeawAGKGS 312
Cdd:COG4700    90 QNRvrlADALLELGRYDEAIELYEEALTGIFADDPHILLG---LAQalfeLGRYAEALETLEKLIAKNPDFK---SSDAH 163

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2124051249 313 I-----LSALGREEEAFEAYSSALRIRPDYlEALTSAGSLLSRLSRLEEALKIYDKALE 366
Cdd:COG4700   164 LlyaraLEALGDLEAAEAELEALARRYSGP-EARYRYAKFLARQGRTAEAKELLEEILD 221
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 242-294 1.76e-05

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 44.60  E-value: 1.76e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2124051249  242 RGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYE 294
Cdd:smart01043  67 LAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYR 119
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 188-393 1.96e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.00  E-value: 1.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 188 LQYCTERLEKDPQDATALFQKAVLMYKTRRFEtALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEP 267
Cdd:TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAE-AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP 801

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 268 TFEVAWDNKGVVLARLGRfEEALEtyekiilkypgYAEawagkgsilsalgreeeafeaysSALRIRPDYLEALTSAGSL 347
Cdd:TIGR02917 802 DNAVVLNNLAWLYLELKD-PRALE-----------YAE-----------------------RALKLAPNIPAILDTLGWL 846

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2124051249 348 LSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQ 393
Cdd:TIGR02917 847 LVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 237-269 2.09e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 2.09e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2124051249  237 RVWYNRGVILSELGRLEEALAAYDRTIELEPTF 269
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
199-297 4.00e-05

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 44.87  E-value: 4.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 199 PQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPE--DHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEvAWDNK 276
Cdd:COG4700   121 ADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDfkSSDAHLLYARALEALGDLEAAEAELEALARRYSGPE-ARYRY 199

                          90       100
                  ....*....|....*....|.
gi 2124051249 277 GVVLARLGRFEEALETYEKII 297
Cdd:COG4700   200 AKFLARQGRTAEAKELLEEIL 220
SirB1 COG2912
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ...
 208-267 4.05e-05

Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];


Pssm-ID: 442156 [Multi-domain]  Cd Length: 264  Bit Score: 44.82  E-value: 4.05e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 208 KAVLMyKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEP 267
Cdd:COG2912   186 KAAYL-REKDWERALRVVERLLLLDPDDPYEIRDRGLLYAQLGCYQAALEDLEYFLEQCP 244
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 195-380 4.16e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 45.75  E-value: 4.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 195 LEKDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWD 274
Cdd:TIGR00990 426 IDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 275 NkgvVLARLGRFEEALETYEKIIlkypgyaeawagkgsilsalgreeEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRL 354
Cdd:TIGR00990 506 N---VLPLINKALALFQWKQDFI------------------------EAENLCEKALIIDPECDIAVATMAQLLLQQGDV 558

                         170       180
                  ....*....|....*....|....*.
gi 2124051249 355 EEALKIYDKALELAPTEPRLWAARGF 380
Cdd:TIGR00990 559 DEALKLFERAAELARTEGELVQAISY 584
TPR_9 pfam13371
Tetratricopeptide repeat;
216-267 4.28e-05

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 41.44  E-value: 4.28e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2124051249 216 RRFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEP 267
Cdd:pfam13371   9 EDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAP 60
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 240-304 4.74e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 41.17  E-value: 4.74e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051249 240 YNRGVILSELGRLEEALAAYDRTIELEPTFEVAWD---NKGVVLARLGRFEEALETYEKIILKYPGYA 304
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFPESPDAAAallLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 275-337 5.23e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 41.17  E-value: 5.23e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2124051249 275 NKGVVLARLGRFEEALETYEKIILKY---PGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDY 337
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
NatA_aux_su pfam12569
N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal ...
 279-378 7.64e-05

N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal acetyltransferase A (NatA) auxiliary subunit (also known as NMDA receptor-regulated protein 1), which is a non-catalytic component of the NatA N-terminal acetyltransferase that catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protecting against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome, and may present the N terminus of nascent polypeptides for acetylation.


Pssm-ID: 463630 [Multi-domain]  Cd Length: 514  Bit Score: 44.95  E-value: 7.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 279 VLARLGRFEEA---LETYEKIILKYPGYAEAwagKGSILSALGREEEAFEAYSSALRIRPD---YLEALTSAGSLLSrlS 352
Cdd:pfam12569  13 IIAESGDLEEAlehLEKVEKQIVDKLAVLET---KADYLLKLGRKEEAEATYRALLERNPEnhaYYEGLEKALGISK--E 87

                          90       100
                  ....*....|....*....|....*.
gi 2124051249 353 RLEEALKIYDkalELAPTEPRLWAAR 378
Cdd:pfam12569  88 DHEALLALYD---ELAEKYPRSDAPR 110
SirB1 COG2912
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ...
 311-403 9.99e-05

Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];


Pssm-ID: 442156 [Multi-domain]  Cd Length: 264  Bit Score: 43.66  E-value: 9.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 311 GSILSALGREEEAFEAYSSALRIRPDYLEAlTSAGSLLSRLSR-----------LEEALKIYDKALELAPTEPRLWAARG 379
Cdd:COG2912   142 GEILSEEELEELLKGLLGPPAELEPEFLAP-ASNREILARMLRnlkaaylrekdWERALRVVERLLLLDPDDPYEIRDRG 220

                          90       100
                  ....*....|....*....|....
gi 2124051249 380 FVLSEIGKHDEALQNCNQALELKP 403
Cdd:COG2912   221 LLYAQLGCYQAALEDLEYFLEQCP 244
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 197-272 1.35e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.13  E-value: 1.35e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2124051249 197 KDPQDATALFQKAVLMYKTRRFETALQLTAQVLKIAPEDHRV---WYNRGVILSELGRLEEALAAYDRTIELEPTFEVA 272
Cdd:COG1729    25 NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 246-369 1.42e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 43.75  E-value: 1.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 246 LSELGRLEEALAAydrtieLEPTFEVAWDNKGVVL---ARLGRFEEALETYEKIILKYPGYAEawagkgsILSALGR--- 319
Cdd:COG3071   203 LIALGDHDEAERL------LREALKRQWDPRLVRLygrLQGGDPAKQLKRAEKWLKKHPNDPD-------LLLALGRlcl 269

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2124051249 320 ----EEEAFEAYSSALRIRPDYlEALTSAGSLLSRLSRLEEALKIYDKALELAP 369
Cdd:COG3071   270 rnqlWGKAREYLEAALALRPSA-EAYAELARLLEQLGDPEEAAEHYRKALALAL 322
TPR_12 pfam13424
Tetratricopeptide repeat;
237-295 1.74e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 39.68  E-value: 1.74e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2124051249 237 RVWYNRGVILSELGRLEEALAAYDRTIEL-EPTFE-------VAWDNKGVVLARLGRFEEALETYEK 295
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIaRRLLGpdhpltaTTLLNLGRLYLELGRYEEALELLER 70
TPR_19 pfam14559
Tetratricopeptide repeat;
318-378 2.03e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 39.10  E-value: 2.03e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2124051249 318 GREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEPRLWAAR 378
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALL 62
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 286-406 2.62e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 43.43  E-value: 2.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 286 FEEALETYEKIILK---YPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKIYD 362
Cdd:TIGR00990 310 YEEAARAFEKALDLgklGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFD 389

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2124051249 363 KALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALELKPGFV 406
Cdd:TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 237-268 2.78e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.89  E-value: 2.78e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2124051249 237 RVWYNRGVILSELGRLEEALAAYDRTIELEPT 268
Cdd:pfam07719   2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_1 pfam00515
Tetratricopeptide repeat;
304-337 3.07e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 3.07e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2124051249 304 AEAWAGKGSILSALGREEEAFEAYSSALRIRPDY 337
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_17 pfam13431
Tetratricopeptide repeat;
361-393 3.12e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 37.91  E-value: 3.12e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2124051249 361 YDKALELAPTEPRLWAARGFVLSEIGKHDEALQ 393
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_11 pfam13414
TPR repeat;
243-284 3.37e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.84  E-value: 3.37e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2124051249 243 GVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLG 284
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 206-267 4.08e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 38.47  E-value: 4.08e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2124051249 206 FQKAVLMYKTRRFETALQLTAQVLK---IAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEP 267
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALArfpESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
TPR_1 pfam00515
Tetratricopeptide repeat;
372-405 5.28e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 5.28e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2124051249 372 PRLWAARGFVLSEIGKHDEALQNCNQALELKPGF 405
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_19 pfam14559
Tetratricopeptide repeat;
250-313 5.49e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.95  E-value: 5.49e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2124051249 250 GRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYPGYAEAWAGKGSI 313
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
TPR_12 pfam13424
Tetratricopeptide repeat;
336-401 6.36e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.14  E-value: 6.36e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2124051249 336 DYLEALTSAGSLLSRLSRLEEALKIYDKALELA--------PTEPRLWAARGFVLSEIGKHDEALQNCNQALEL 401
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
TPR_15 pfam13429
Tetratricopeptide repeat;
209-421 7.48e-04

Tetratricopeptide repeat;


Pssm-ID: 433199 [Multi-domain]  Cd Length: 279  Bit Score: 41.19  E-value: 7.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 209 AVLMYKTRRFETALQLTAQVLKIAPE-DHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDnKGVVLARLGRFE 287
Cdd:pfam13429  15 ATLLYGQGDPRKALAALKEGAQTAPAsDTEFWRTLADLAWALQQDDDARRAYRQLLASGKARADDYE-RLILLLYDARPK 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 288 EALETYEkiilkypgyaEAWAGKGSILsalgREEEAFEAYssalrirpDYLEALTSAGSLLSRLSRLEEALKiydkalel 367
Cdd:pfam13429  94 DAARLSE----------LGWRRFRSPR----HLYSALYLY--------ERAGDYDRLARLLASLEELPAAEQ-------- 143

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2124051249 368 aptEPRLWAARGFVLSEIGKHDEALQNCNQALELKPGFVPALETKVKILSEIQR 421
Cdd:pfam13429 144 ---SPAFWLARAEYYRQTGEPDAALRDYRRALALAPASTELRAALLWFLIDLGR 194
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 281-411 7.94e-04

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 39.59  E-value: 7.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249  281 ARLGRFEEALETYEKIILKYPGyaeawagkgsilSALGREEEAFEAYSSALRIRPDYLEALTSAGSLLSRLSRLEEALKI 360
Cdd:smart01043  16 ALAADPEAALALLEAALALYRG------------PLLADVPDEDWAEAERERLRELRLEALEALAEALLALGRHEEALAL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2124051249  361 YDKALELAPTEPRLWAARGFVLSEIGKHDEAL---QNCNQALELKPGFVPALET 411
Cdd:smart01043  84 LERLLALDPLRERLHRLLMRALYRAGRRAEALrayRRLRRLLADELGVEPGPEL 137
PLN02789 PLN02789
farnesyltranstransferase
 217-331 9.28e-04

farnesyltranstransferase


Pssm-ID: 215423 [Multi-domain]  Cd Length: 320  Bit Score: 40.88  E-value: 9.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 217 RFETALQLTAQVLKIAPEDHRVWYNRGVILSELG-RLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGR--FEEALETY 293
Cdd:PLN02789   52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDaDLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPdaANKELEFT 131

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2124051249 294 EKIILKYPGYAEAWAGKGSILSALGREEEAFEaYSSAL 331
Cdd:PLN02789  132 RKILSLDAKNYHAWSHRQWVLRTLGGWEDELE-YCHQL 168
TPR_19 pfam14559
Tetratricopeptide repeat;
284-340 1.28e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 1.28e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2124051249 284 GRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEEAFEAYSSALRIRPDYLEA 340
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 240-340 1.30e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 39.27  E-value: 1.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 240 YNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRF-EEALETYEkiilkypgyAEAWAGKgsilsalg 318
Cdd:PRK02603   76 YNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKaEEAGDQDE---------AEALFDK-------- 138

                          90       100
                  ....*....|....*....|...
gi 2124051249 319 reeeAFEAYSSALRIRPD-YLEA 340
Cdd:PRK02603  139 ----AAEYWKQAIRLAPNnYIEA 157
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
250-391 1.50e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 39.87  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 250 GRLEEALAAYDRTielePTFE--VAWdnkGVVLARLGRFEEALETYEKIILK-YPGYAEAWAGKGSILSALGREEEAFEA 326
Cdd:COG4700    74 RELRELEKALEFA----DTVQnrVRL---ADALLELGRYDEAIELYEEALTGiFADDPHILLGLAQALFELGRYAEALET 146

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2124051249 327 YSSALRIRPDYleaLTSAGSL-----LSRLSRLEEALKIYDKALELAPT-EPRLWAARgfVLSEIGKHDEA 391
Cdd:COG4700   147 LEKLIAKNPDF---KSSDAHLlyaraLEALGDLEAAEAELEALARRYSGpEARYRYAK--FLARQGRTAEA 212
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 245-404 1.67e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 40.84  E-value: 1.67e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249  245 ILSELGRLEEALAAYDRTIELE-PTFEVAWDNKGVVlARL-GRFEEALETYEKIILKYPGYAEAWAGKGSILSALGREEE 322
Cdd:PRK11447   121 LLATTGRTEEALASYDKLFNGApPELDLAVEYWRLV-AKLpAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDE 199

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249  323 AFE----------AYSSALRIRPDYLEAL----TSAGSLLSRLSRLEEALKIYDKALELAPTEPRL----WAAR--GFVL 382
Cdd:PRK11447   200 GFAvleqmakspaGRDAAAQLWYGQIKDMpvsdASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLadpaFRARaqGLAA 279

                          170       180
                   ....*....|....*....|..
gi 2124051249  383 SEIGKHDEALQNCNQALELKPG 404
Cdd:PRK11447   280 VDSGQGGKAIPELQQAVRANPK 301
TPR_17 pfam13431
Tetratricopeptide repeat;
227-257 1.90e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.60  E-value: 1.90e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2124051249 227 QVLKIAPEDHRVWYNRGVILSELGRLEEALA 257
Cdd:pfam13431   4 KALELDPNNADAYYNLAVLLLELGQSETALQ 34
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 280-331 2.08e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 39.07  E-value: 2.08e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2124051249 280 LARL----GRFEEALETYEKIIlkypgyAEAWAG-----KGSILSALGREEEAFEAYSSAL 331
Cdd:COG2976   133 LARVllaqKKYDEALATLDAVK------PEAFAAlyaelRGDILLAQGDKAEARAAYQKAL 187
TPR_21 pfam09976
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.
 279-332 2.19e-03

Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.


Pssm-ID: 430959 [Multi-domain]  Cd Length: 194  Bit Score: 39.11  E-value: 2.19e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2124051249 279 VLARLGRFEEALETYEKIilkypgYAEAWAG-----KGSILSALGREEEAFEAYSSALR 332
Cdd:pfam09976 122 VLLAQGKYDEALKTLDAV------TPAAFAAlyaelRGDILVAQGKTDEARAAYQAALD 174
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 212-392 2.33e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 40.29  E-value: 2.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 212 MYKTRRFETALQLTAQVLKI-----APEDHRVWY---NRGVILSELGRLEEA-------LAAYDRTIELEP----TFEVA 272
Cdd:NF040586  402 LYLRGDYESARDLAERALERwrerlGPDDRQTLRlrfHLANALRSLGRYEEAreldedtLERQRRVLGLGEdhphTLMTA 481

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 273 wDNKGVVLARLGRFEEALEtyekiilkypgyaeawagkgsilsalgREEEAFEAYSSALriRPDYLEALTSAGSL-LSR- 350
Cdd:NF040586  482 -GGLGADLRALGRFREALE---------------------------LDEETLERHRRVF--GEDHPRTLRAANNLaVSLr 531

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2124051249 351 -LSRLEEALKIYDKALE-----LAPTEPRLWAAR---GFVLSEIGKHDEAL 392
Cdd:NF040586  532 lLGDYREALELDREVLRrrrrvLGPDHPRTLLSAnnlARDLRELGRYAEAL 582
TPR_9 pfam13371
Tetratricopeptide repeat;
245-301 2.98e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 36.04  E-value: 2.98e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2124051249 245 ILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEKIILKYP 301
Cdd:pfam13371   4 IYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAP 60
BET4 COG5536
Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, ...
 154-245 2.99e-03

Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227823 [Multi-domain]  Cd Length: 328  Bit Score: 39.47  E-value: 2.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 154 MVTKSL------TFHGENYEILPIFLAVRDLYASLpFFEELQYCTERLEKDPQDATALFQKAVLMYktRRFETA------ 221
Cdd:COG5536   131 FITKKLldsdsrNYHVWSYRRWVLRTIEDLFNFSD-LKHELEYTTSLIETDIYNNSAWHHRYIWIE--RRFNRGdvisqk 207

                          90       100       110
                  ....*....|....*....|....*....|
gi 2124051249 222 -----LQLTAQVLKIAPEDHRVW-YNRGVI 245
Cdd:COG5536   208 ylekeLEYIFDKIFTDPDNQSVWgYLRGVS 237
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 218-295 3.69e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 39.38  E-value: 3.69e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051249 218 FETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEPTFEVAWDNKGVVLARLGRFEEALETYEK 295
Cdd:PLN03088   18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 304-337 3.97e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 3.97e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2124051249  304 AEAWAGKGSILSALGREEEAFEAYSSALRIRPDY 337
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 284-412 4.07e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 38.30  E-value: 4.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2124051249 284 GRFEEALETYEKIILKYPG--YAeAWAG--KGSILSALGREEEAFEAYSSALRIRPDylEALTSAGSLlsRLSRLEEALK 359
Cdd:COG2976    67 GDAAAAAAAAEKLIDDYGGtaYA-ALAAllLAKAAVDAGDLDKAAAQLQWVLDNAKD--PALKALARL--RLARVLLAQK 141

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2124051249 360 IYDKALE-LAPTEPRLWAA-----RGFVLSEIGKHDEALQNCNQALELKPG---FVPALETK 412
Cdd:COG2976   142 KYDEALAtLDAVKPEAFAAlyaelRGDILLAQGDKAEARAAYQKALAALPEdapLRQLLQMK 203
TPR_17 pfam13431
Tetratricopeptide repeat;
258-291 4.14e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 34.83  E-value: 4.14e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2124051249 258 AYDRTIELEPTFEVAWDNKGVVLARLGRFEEALE 291
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 372-405 4.30e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 4.30e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2124051249  372 PRLWAARGFVLSEIGKHDEALQNCNQALELKPGF 405
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
272-303 5.07e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.32  E-value: 5.07e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2124051249 272 AWDNKGVVLARLGRFEEALETYEKIILKYPGY 303
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 272-302 5.43e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.42  E-value: 5.43e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2124051249 272 AWDNKGVVLARLGRFEEALETYEKIILKYPG 302
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_9 pfam13371
Tetratricopeptide repeat;
346-403 6.35e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 35.27  E-value: 6.35e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2124051249 346 SLLSRLSRLEEALKIYDKALELAPTEPRLWAARGFVLSEIGKHDEALQNCNQALELKP 403
Cdd:pfam13371   3 AIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAP 60
TPR_8 pfam13181
Tetratricopeptide repeat;
236-267 6.73e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 33.91  E-value: 6.73e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2124051249 236 HRVWYNRGVILSELGRLEEALAAYDRTIELEP 267
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDP 32
TPR_19 pfam14559
Tetratricopeptide repeat;
217-267 7.02e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 34.87  E-value: 7.02e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2124051249 217 RFETALQLTAQVLKIAPEDHRVWYNRGVILSELGRLEEALAAYDRTIELEP 267
Cdd:pfam14559   3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADP 53
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 310-372 7.35e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 35.00  E-value: 7.35e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2124051249 310 KGSILSALGREEEAFEAYSSALRIR---PDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPTEP 372
Cdd:pfam13432   3 LARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_8 pfam13181
Tetratricopeptide repeat;
304-336 7.50e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 33.91  E-value: 7.50e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2124051249 304 AEAWAGKGSILSALGREEEAFEAYSSALRIRPD 336
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 344-404 8.19e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 35.00  E-value: 8.19e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2124051249 344 AGSLLSRLSRLEEALKIYDKALELAPTEPRLWAAR---GFVLSEIGKHDEALQNCNQALELKPG 404
Cdd:pfam13432   3 LARAALRAGDYDDAAAALEAALARFPESPDAAAALlllGLAALRQGRLAEAAAAYRAALRAAPG 66
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 334-409 8.63e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 38.43  E-value: 8.63e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2124051249 334 RPDYLEALTSAGSLLSRLSRLEEALKIYDKALELAPtEPRLWAARGFVLSEIGKHDEALQNCNQALELKPGFVPAL 409
Cdd:TIGR00990 123 RKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKAL 197
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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