|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
131-334 |
3.31e-34 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 127.82 E-value: 3.31e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 131 IELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILH 210
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 211 QRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRD 290
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2180480390 291 AEAIKDYDKSLEIAPKYALAMQNRAWLLATSENEDVRDPEAAVE 334
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALE 204
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
91-339 |
1.77e-28 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 112.90 E-value: 1.77e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 91 DIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPE 170
Cdd:COG2956 29 DLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPD 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 171 SIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVH 250
Cdd:COG2956 109 DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELY 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 251 FQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPkyalamQNRAWLLATSENEDVRDPE 330
Cdd:COG2956 189 LEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP------SDDLLLALADLLERKEGLE 262
|
....*....
gi 2180480390 331 AAVEMAKAA 339
Cdd:COG2956 263 AALALLERQ 271
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
118-376 |
3.08e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 109.43 E-value: 3.08e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 118 GKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTL 197
Cdd:COG2956 22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 198 VLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAW 277
Cdd:COG2956 102 LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 278 NNRGYNLSRLGRDAEAIKDYDKSLEIAPKYALAMQNRAWLLatsenEDVRDPEAAVEMAKAACELNNftGVSDLSALAAA 357
Cdd:COG2956 182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY-----EKLGDPEEALELLRKALELDP--SDDLLLALADL 254
|
250
....*....|....*....
gi 2180480390 358 LAAKGEFKEAIGWQEKVVE 376
Cdd:COG2956 255 LERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
144-376 |
3.62e-24 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 100.96 E-value: 3.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 144 RGLFHAEMGSFDKAIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEME 223
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 224 QAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEI 303
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2180480390 304 APKYAlamqnRAWLLATSENEDVRDPEAAVEMAKAACELNNfTGVSDLSALAAALAAKGEFKEAIGWQEKVVE 376
Cdd:COG2956 174 DPDCA-----RALLLLAELYLEQGDYEEAIAALERALEQDP-DYLPALPRLAELYEKLGDPEEALELLRKALE 240
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
85-304 |
6.18e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 97.00 E-value: 6.18e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 85 RIAESSDIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKA 164
Cdd:COG0457 23 RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 165 LEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVM 244
Cdd:COG0457 103 LELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAA 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 245 GRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIA 304
Cdd:COG0457 183 LGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
103-333 |
7.43e-22 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 98.14 E-value: 7.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 103 EGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAY--TSRGLFHAEMGSFDKAIADYDKALEVDPESIAPIINRAA 180
Cdd:COG3914 7 LALAALAAAALLAAAAAAELALAAELEAAALAAALGLALllLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 181 VHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAI 260
Cdd:COG3914 87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAI 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2180480390 261 DDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKYALAMQNRAWLLATSENEDVRDPEAAV 333
Cdd:COG3914 167 AALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEEL 239
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
146-314 |
2.28e-21 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 91.90 E-value: 2.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 146 LFHAEMGSFDKAIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKT---KKNSASILHQRAIAHKAAGEM 222
Cdd:COG4785 10 LALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRalaLPDLAQLYYERGVAYDSLGDY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 223 EQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLE 302
Cdd:COG4785 90 DLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALE 169
|
170
....*....|..
gi 2180480390 303 IAPKYALAMQNR 314
Cdd:COG4785 170 LDPNDPERALWL 181
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
81-302 |
3.18e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 93.13 E-value: 3.18e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 81 NNAARIAESSDIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIElgyteAHAYTSRGLFHAEMGSFDKAIAD 160
Cdd:COG3914 26 LALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLL-----AALLELAALLLQALGRYEEALAL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 161 YDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDR 240
Cdd:COG3914 101 YRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNA 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2180480390 241 RAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLG--RDAEAIKDYDKSLE 302
Cdd:COG3914 181 EALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACdwEVYDRFEELLAALA 244
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
199-377 |
6.43e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 85.44 E-value: 6.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 199 LKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWN 278
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 279 NRGYNLSRLGRDAEAIKDYDKSLEIAPKYALAMQNRAWLLAtsenedvrdpeaavemakaacelnnftgvsdlsalaaal 358
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL--------------------------------------- 121
|
170
....*....|....*....
gi 2180480390 359 aAKGEFKEAIGWQEKVVEM 377
Cdd:COG0457 122 -ELGRYDEAIEAYERALEL 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
60-268 |
1.58e-17 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 81.11 E-value: 1.58e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 60 EERDDDYVIVTHDGSKGAVDKNNAARIAESSDIYTQLIEefPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAH 139
Cdd:COG4785 31 FAAVLALAIALADLALALAAAALAAAALAAERIDRALAL--PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 140 AYTSRGLFHAEMGSFDKAIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAA 219
Cdd:COG4785 109 AYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2180480390 220 GEmEQAVADFSRIlknndkdrravmgRGYVHFQNGNHAAAIDDFAKAIE 268
Cdd:COG4785 189 DP-EKALALLLED-------------WATAYLLQGDTEEARELFKLALA 223
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
81-302 |
9.44e-17 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 78.80 E-value: 9.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 81 NNAARIAESSDIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIE------LGYTEAHAYTSRGLFHAEMGSF 154
Cdd:COG4785 10 LALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAEridralALPDLAQLYYERGVAYDSLGDY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 155 DKAIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILK 234
Cdd:COG4785 90 DLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2180480390 235 NNDKDRRAVMGRgYVHFQNGNHAAAIDDFAKAIeldpsdavawnnrGYNLSRLGRDAEAIKDYDKSLE 302
Cdd:COG4785 170 LDPNDPERALWL-YLAERKLDPEKALALLLEDW-------------ATAYLLQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
176-307 |
1.76e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 76.00 E-value: 1.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 176 INRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGN 255
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2180480390 256 HAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKY 307
Cdd:COG4783 88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
206-343 |
4.12e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.84 E-value: 4.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 206 ASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLS 285
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2180480390 286 RLGRDAEAIKDYDKSLEIAPKYALAMQNRAWLLatsenEDVRDPEAAVEMAKAACELN 343
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAY-----RALGRPDEAIAALEKALELD 136
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
77-242 |
6.26e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 80.04 E-value: 6.26e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 77 AVDKNNAARIAESSDIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDK 156
Cdd:COG3914 51 LAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEE 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 157 AIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNN 236
Cdd:COG3914 131 ALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
....*.
gi 2180480390 237 DKDRRA 242
Cdd:COG3914 211 PDNADA 216
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
138-273 |
5.53e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 71.76 E-value: 5.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 138 AHAYTSRGLFHAEMGSFDKAIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHK 217
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2180480390 218 AAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSD 273
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
103-339 |
1.44e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 75.89 E-value: 1.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 103 EGRYytLRAAAWWALGKTEQAVLDFDKAIELGYTEAHA--YTSRGLFhaEMGSFDKAIADY-DKALEVDPESIAPIINRA 179
Cdd:TIGR02917 57 EARF--LLGKIYLALGDYAAAEKELRKALSLGYPKNQVlpLLARAYL--LQGKFQQVLDELpGKTLLDDEGAAELLALRG 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 180 AVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAA 259
Cdd:TIGR02917 133 LAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 260 IDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKYALAMQNRAwLLATSENEDVRDPEAAVEMAKAA 339
Cdd:TIGR02917 213 LAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKA-LVDFQKKNYEDARETLQDALKSA 291
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
105-239 |
1.46e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.22 E-value: 1.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 105 RYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPESIAPIINRAAVHMS 184
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2180480390 185 RKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKD 239
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
101-380 |
1.71e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 75.51 E-value: 1.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 101 PEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPESIAPIINRAA 180
Cdd:TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 181 VHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRrAVMGRGYVHFQNGNHAAAI 260
Cdd:TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ-NAIKLHRALLASGNTAEAV 756
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 261 DDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKYALAMQNRAWLLATsenedvRDPEAAVEMAKAAC 340
Cdd:TIGR02917 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE------LKDPRALEYAERAL 830
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2180480390 341 EL-NNFTGVSDlsALAAALAAKGEFKEAIGWQEKVVEMVAE 380
Cdd:TIGR02917 831 KLaPNIPAILD--TLGWLLVEKGEADRALPLLRKAVNIAPE 869
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
84-376 |
2.74e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 75.12 E-value: 2.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 84 ARIAESSDIYTQLIEEFPE------EGR--YYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFD 155
Cdd:TIGR02917 97 ARAYLLQGKFQQVLDELPGktllddEGAaeLLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 156 KAIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKN 235
Cdd:TIGR02917 177 EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKK 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 236 NDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKYALAMQnra 315
Cdd:TIGR02917 257 APNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARR--- 333
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2180480390 316 wLLATSENEDVRDPEAAVEMAKAacelnNFTGVSD---LSALAAALAAKGEFKEAIGWQEKVVE 376
Cdd:TIGR02917 334 -LLASIQLRLGRVDEAIATLSPA-----LGLDPDDpaaLSLLGEAYLALGDFEKAAEYLAKATE 391
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
156-274 |
2.77e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 69.26 E-value: 2.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 156 KAIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKN 235
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 2180480390 236 NDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDA 274
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
190-317 |
1.09e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 67.72 E-value: 1.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 190 KAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIEL 269
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2180480390 270 DPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKYALAMQNRAWL 317
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
77-200 |
2.98e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 66.75 E-value: 2.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 77 AVDKNNAARIAESSDIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDK 156
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2180480390 157 AIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLK 200
Cdd:COG4783 91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
121-306 |
4.18e-13 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 71.17 E-value: 4.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 121 EQAVLDFDKAI---ELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTL 197
Cdd:TIGR00990 311 EEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 198 VLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAW 277
Cdd:TIGR00990 391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVY 470
|
170 180
....*....|....*....|....*....
gi 2180480390 278 NNRGYNLSRLGRDAEAIKDYDKSLEIAPK 306
Cdd:TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELEKE 499
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
154-305 |
3.30e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 64.21 E-value: 3.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 154 FDKAIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRIL 233
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2180480390 234 KNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAP 305
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
77-352 |
3.45e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 68.57 E-value: 3.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 77 AVDKNNAARIAESSDIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDK 156
Cdd:TIGR02917 166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 157 AIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNN 236
Cdd:TIGR02917 246 AEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 237 DKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKYALAMQNRAw 316
Cdd:TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG- 404
|
250 260 270
....*....|....*....|....*....|....*.
gi 2180480390 317 LLATSENedvrDPEAAVEMAKAACELNNFTGVSDLS 352
Cdd:TIGR02917 405 ISKLSQG----DPSEAIADLETAAQLDPELGRADLL 436
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
249-343 |
6.88e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 61.34 E-value: 6.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 249 VHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKdYDKSLEIAPKYALAMQNRAWLLAtseneDVRD 328
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLL-----ELGD 74
|
90
....*....|....*
gi 2180480390 329 PEAAVEMAKAACELN 343
Cdd:COG3063 75 YDEALAYLERALELD 89
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
101-342 |
7.76e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 66.93 E-value: 7.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 101 PEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPESIAPIINRAA 180
Cdd:TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 181 VHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAI 260
Cdd:TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 261 DDFAKAIELD-PSDAVAWN-----NRGYNLSRLGRD-AEAIKDYDKSLEIAPKYALAMQNRAWLLATSEN--EDVRDPEA 331
Cdd:TIGR00990 488 EKFDTAIELEkETKPMYMNvlpliNKALALFQWKQDfIEAENLCEKALIIDPECDIAVATMAQLLLQQGDvdEALKLFER 567
|
250
....*....|.
gi 2180480390 332 AVEMAKAACEL 342
Cdd:TIGR00990 568 AAELARTEGEL 578
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
187-343 |
9.82e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.67 E-value: 9.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 187 DFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKA 266
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2180480390 267 IELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKYALAMQNRAWLLATSEnedvrDPEAAVEMAKAACELN 343
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG-----QDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
215-306 |
2.07e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.18 E-value: 2.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 215 AHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDdFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAI 294
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2180480390 295 KDYDKSLEIAPK 306
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
93-343 |
2.56e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 65.88 E-value: 2.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 93 YTQLIEEF-------PEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKAL 165
Cdd:TIGR02917 379 FEKAAEYLakateldPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLE 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 166 EVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMG 245
Cdd:TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 246 RGYVHFQNGNHAAAIDDFAKAIELDPSD---AVAwnnrgynlsrLGRDAEAIKDYDKSLEIAPKYALAM--QNRAWLLAT 320
Cdd:TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEiepALA----------LAQYYLGKGQLKKALAILNEAADAApdSPEAWLMLG 608
|
250 260
....*....|....*....|...
gi 2180480390 321 SENEDVRDPEAAVEMAKAACELN 343
Cdd:TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ 631
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
122-244 |
2.79e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.79 E-value: 2.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 122 QAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKT 201
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2180480390 202 KKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVM 244
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
237-343 |
5.11e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.21 E-value: 5.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 237 DKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKYALAMQNRAW 316
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100
....*....|....*....|....*..
gi 2180480390 317 LLATSEnedvrDPEAAVEMAKAACELN 343
Cdd:COG4783 81 ALLKAG-----DYDEALALLEKALKLD 102
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
93-215 |
8.27e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.25 E-value: 8.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 93 YTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPESI 172
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2180480390 173 APIINRAAVHMSRKDFDKAIADYTLVLKT-KKNSASILHQRAIA 215
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLALlPADAPARLLEASIA 129
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
224-319 |
1.10e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.86 E-value: 1.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 224 QAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEI 303
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90
....*....|....*.
gi 2180480390 304 APKYALAMQNRAWLLA 319
Cdd:COG4235 81 DPDNPEALYLLGLAAF 96
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
148-241 |
1.19e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 57.87 E-value: 1.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 148 HAEMGSFDKAIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIAdYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVA 227
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|....
gi 2180480390 228 DFSRILKNNDKDRR 241
Cdd:COG3063 81 YLERALELDPSALR 94
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
93-375 |
2.38e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 62.79 E-value: 2.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 93 YTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPESI 172
Cdd:TIGR02917 624 FKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAA 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 173 APIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQrAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQ 252
Cdd:TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL-HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA 782
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 253 NGNHAAAIDDFAKAIELDPSDAVAWNNRGYnLSRLGRDAEAIKDYDKSLEIAPKYALAMQNRAWLLATSenedvRDPEAA 332
Cdd:TIGR02917 783 QKDYDKAIKHYQTVVKKAPDNAVVLNNLAW-LYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEK-----GEADRA 856
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2180480390 333 VEMAKAACELNNFTGVSDLSALAAALAAkGEFKEAIGWQEKVV 375
Cdd:TIGR02917 857 LPLLRKAVNIAPEAAAIRYHLALALLAT-GRKAEARKELDKLL 898
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
91-236 |
2.61e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.82 E-value: 2.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 91 DIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPE 170
Cdd:COG5010 7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2180480390 171 SIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNN 236
Cdd:COG5010 87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
113-200 |
6.30e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.95 E-value: 6.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 113 AWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIAdYDKALEVDPESIAPIINRAAVHMSRKDFDKAI 192
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
....*...
gi 2180480390 193 ADYTLVLK 200
Cdd:COG3063 80 AYLERALE 87
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
83-203 |
6.39e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 57.66 E-value: 6.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 83 AARIAESSDIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYD 162
Cdd:COG5010 33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYE 112
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2180480390 163 KALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKK 203
Cdd:COG5010 113 KALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
97-304 |
7.32e-10 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 60.77 E-value: 7.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 97 IEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPESIAPII 176
Cdd:TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 177 NRAAVHMSRKDFDKAIADYTLVLKTKKNS-------ASILHQRAIAHKAAGEMEQAVAdFSRILKNNDKDRRAVMGRGYV 249
Cdd:TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEApdvynyyGELLLDQNKFDEAIEKFDTAIE-LEKETKPMYMNVLPLINKALA 516
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2180480390 250 HFQ-NGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIA 304
Cdd:TIGR00990 517 LFQwKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
181-272 |
5.93e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.87 E-value: 5.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 181 VHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVAdFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAI 260
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2180480390 261 DDFAKAIELDPS 272
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
211-343 |
1.11e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 55.89 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 211 QRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRD 290
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2180480390 291 AEAIKDYDKSLEIAPKYALAMQNRAWLLatsenEDVRDPEAAVEMAKAACELN 343
Cdd:COG2956 93 DRAEELLEKLLELDPDDAEALRLLAEIY-----EQEGDWEKAIEVLERLLKLG 140
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
91-306 |
1.30e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 56.92 E-value: 1.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 91 DIYTQLIEeFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVD-- 168
Cdd:TIGR00990 148 KLYSKAIE-CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDgf 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 169 -PESIAPIINR-----AAVHMSRKDFDK--------AIADYTLVLKTKKNSASI----------------LHQRAIAHKA 218
Cdd:TIGR00990 227 rNEQSAQAVERllkkfAESKAKEILETKpenlpsvtFVGNYLQSFRPKPRPAGLedsneldeetgngqlqLGLKSPESKA 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 219 AGEMEQAVADFSRILKNND---KDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIK 295
Cdd:TIGR00990 307 DESYEEAARAFEKALDLGKlgeKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386
|
250
....*....|.
gi 2180480390 296 DYDKSLEIAPK 306
Cdd:TIGR00990 387 DFDKALKLNSE 397
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
112-339 |
1.39e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.02 E-value: 1.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 112 AAWWALGKTEQAVLDFDKAieLGYTEAHAYTSRGL--FHAEMGSFDKAIADYDKALEVDPESIAPIINRAAVHMSRKDFD 189
Cdd:TIGR02917 303 ASEYQLGNLEQAYQYLNQI--LKYAPNSHQARRLLasIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 190 KAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIEL 269
Cdd:TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 270 DPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKYALAMQNRAWLLATSENedvrdPEAAVEMAKAA 339
Cdd:TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN-----PDDAIQRFEKV 525
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
85-170 |
1.05e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.40 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 85 RIAESSDIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAvLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKA 164
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
....*.
gi 2180480390 165 LEVDPE 170
Cdd:COG3063 86 LELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
258-377 |
1.99e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.62 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 258 AAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKYALAMQNRAWLLATSEnedvrDPEAAVEMAK 337
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-----DTEEAEELLE 75
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2180480390 338 AACELNNfTGVSDLSALAAALAAKGEFKEAIGWQEKVVEM 377
Cdd:COG4235 76 RALALDP-DNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
85-171 |
4.78e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.46 E-value: 4.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 85 RIAESSDIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKA 164
Cdd:COG4235 32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
....*..
gi 2180480390 165 LEVDPES 171
Cdd:COG4235 112 LALLPAD 118
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
82-171 |
9.37e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.88 E-value: 9.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 82 NAARIAESSDIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADY 161
Cdd:COG4783 50 QLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
|
90
....*....|
gi 2180480390 162 DKALEVDPES 171
Cdd:COG4783 130 EKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
81-301 |
5.89e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.54 E-value: 5.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 81 NNAARIAESSDIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELgytEAHAYTSRGLFHAEMGSFDKAIAD 160
Cdd:TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAV 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 161 --YDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRA-IAHKAAGEmeQAVADFSRILKNND 237
Cdd:TIGR02917 757 ktLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAwLYLELKDP--RALEYAERALKLAP 834
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2180480390 238 KDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSL 301
Cdd:TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
157-397 |
6.37e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.54 E-value: 6.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 157 AIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNN 236
Cdd:TIGR02917 41 AIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLD 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 237 DKDRRAVMG-RGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKYALAMQNRA 315
Cdd:TIGR02917 121 DEGAAELLAlRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 316 WLLATSENedvrdPEAAVEMAKAACELNNFTgVSDLSALAAALAAKGEFKEAIGWQEKVVEMV-AEPFKEFAeKILVRYQ 394
Cdd:TIGR02917 201 DLLLSLGN-----IELALAAYRKAIALRPNN-IAVLLALATILIEAGEFEEAEKHADALLKKApNSPLAHYL-KALVDFQ 273
|
...
gi 2180480390 395 NER 397
Cdd:TIGR02917 274 KKN 276
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
85-202 |
8.43e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 47.03 E-value: 8.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 85 RIAESSDIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKA 164
Cdd:COG2956 159 DYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKA 238
|
90 100 110
....*....|....*....|....*....|....*...
gi 2180480390 165 LEVDPeSIAPIINRAAVHMSRKDFDKAIADYTLVLKTK 202
Cdd:COG2956 239 LELDP-SDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
154-237 |
8.91e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 48.06 E-value: 8.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 154 FDKAIADYDKALEVDPESIApIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRIL 233
Cdd:TIGR00990 143 FNKAIKLYSKAIECKPDPVY-YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASC 221
|
....
gi 2180480390 234 KNND 237
Cdd:TIGR00990 222 IIDG 225
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
138-170 |
2.67e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 40.89 E-value: 2.67e-05
10 20 30
....*....|....*....|....*....|...
gi 2180480390 138 AHAYTSRGLFHAEMGSFDKAIADYDKALEVDPE 170
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
274-307 |
2.94e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.87 E-value: 2.94e-05
10 20 30
....*....|....*....|....*....|....
gi 2180480390 274 AVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKY 307
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
140-170 |
3.28e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.48 E-value: 3.28e-05
10 20 30
....*....|....*....|....*....|.
gi 2180480390 140 AYTSRGLFHAEMGSFDKAIADYDKALEVDPE 170
Cdd:pfam00515 3 ALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
247-288 |
4.27e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.53 E-value: 4.27e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2180480390 247 GYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLG 288
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
211-274 |
6.62e-05 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 40.78 E-value: 6.62e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2180480390 211 QRAIAHKAAGEMEQAVADFSRILKNNDK---DRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDA 274
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
88-269 |
6.64e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 45.36 E-value: 6.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 88 ESSDIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEV 167
Cdd:TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 168 DPESIAPIINRAAVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFS-------RILKNNDKDR 240
Cdd:TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIeaenlceKALIIDPECD 542
|
170 180
....*....|....*....|....*....
gi 2180480390 241 RAVMGRGYVHFQNGNHAAAIDDFAKAIEL 269
Cdd:TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
211-312 |
2.16e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 43.92 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 211 QRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSdavawnnrGYNLSR---- 286
Cdd:PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH--------SSNRDKwesl 345
|
90 100
....*....|....*....|....*...
gi 2180480390 287 --LGRDAEAIKDYDKSLEiAPKYALAMQ 312
Cdd:PRK11447 346 lkVNRYWLLIQQGDAALK-ANNLAQAER 372
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
263-295 |
2.30e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 38.29 E-value: 2.30e-04
10 20 30
....*....|....*....|....*....|...
gi 2180480390 263 FAKAIELDPSDAVAWNNRGYNLSRLGRDAEAIK 295
Cdd:pfam13431 2 YLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
247-306 |
2.71e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.29 E-value: 2.71e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2180480390 247 GYVHFQNGNHAAAIDDFAKAIEL--------DPSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPK 306
Cdd:pfam13424 10 AAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
244-273 |
2.96e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 2.96e-04
10 20 30
....*....|....*....|....*....|
gi 2180480390 244 MGRGYVHFQNGNHAAAIDDFAKAIELDPSD 273
Cdd:pfam00515 5 YNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
91-170 |
3.30e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 42.47 E-value: 3.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 91 DIYTQLIEEFPEEGRYYTLRAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPE 170
Cdd:PLN03088 23 DLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
274-307 |
4.02e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 4.02e-04
10 20 30
....*....|....*....|....*....|....
gi 2180480390 274 AVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKY 307
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
150-235 |
4.11e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 4.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 150 EMGSFDKAIADYDKALEVDPES-IAP--IINRAAVHMSRKDFDKAIADYTLVLKTKKNS---ASILHQRAIAHKAAGEME 223
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSpLAPdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYD 84
|
90
....*....|..
gi 2180480390 224 QAVADFSRILKN 235
Cdd:COG1729 85 KARATLEELIKK 96
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
274-342 |
6.48e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.14 E-value: 6.48e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2180480390 274 AVAWNNRGYNLSRLGRDAEAIKDYDKSLEIA--------PKYALAMQNRAWLLATSEnedvrDPEAAVEMAKAACEL 342
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELG-----RYEEALELLERALAL 74
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
185-320 |
7.13e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 40.04 E-value: 7.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 185 RKD--FDKA---IADYTL-VLKTKKNS--ASILHQRAIAHKAAGEMEQAVADFSRILK--NNDKDRRAVM-GRGYVHFQN 253
Cdd:PRK02603 6 RNDnfIDKSftvMADLILkILPINKKAkeAFVYYRDGMSAQADGEYAEALENYEEALKleEDPNDRSYILyNMGIIYASN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 254 GNHAAAIDDFAKAIELDPSDAVAWNN-------RGYNLSRLGRDAEAIKDYDKSLE-------IAPKYALAMQNraWLLA 319
Cdd:PRK02603 86 GEHDKALEYYHQALELNPKQPSALNNiaviyhkRGEKAEEAGDQDEAEALFDKAAEywkqairLAPNNYIEAQN--WLKT 163
|
.
gi 2180480390 320 T 320
Cdd:PRK02603 164 T 164
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
241-273 |
1.12e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.27 E-value: 1.12e-03
10 20 30
....*....|....*....|....*....|...
gi 2180480390 241 RAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSD 273
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
274-306 |
1.22e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.35 E-value: 1.22e-03
10 20 30
....*....|....*....|....*....|...
gi 2180480390 274 AVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPK 306
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
244-308 |
1.34e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.93 E-value: 1.34e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2180480390 244 MGRGYVHFQNGNHAAAIDDFAKAIELD---PSDAVAWNNRGYNLSRLGRDAEAIKDYDKSLEIAPKYA 308
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
121-193 |
1.72e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 40.16 E-value: 1.72e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2180480390 121 EQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPESIAPIINRAAVHMSRKDFDKAIA 193
Cdd:PLN03088 19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
137-231 |
2.83e-03 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 38.50 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 137 EAHAYTSRGLFHAEMGSFDKAIADYDKAL--EVDPESIAPII-NRAAVHMSRKDFDKAIADY--TLVLKTK-----KNSA 206
Cdd:PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALklEEDPNDRSYILyNMGIIYASNGEHDKALEYYhqALELNPKqpsalNNIA 113
|
90 100
....*....|....*....|....*
gi 2180480390 207 SILHQRAIAHKAAGEMEQAVADFSR 231
Cdd:PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDK 138
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
138-170 |
3.92e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 34.68 E-value: 3.92e-03
10 20 30
....*....|....*....|....*....|...
gi 2180480390 138 AHAYTSRGLFHAEMGSFDKAIADYDKALEVDPE 170
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
180-246 |
4.68e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 35.66 E-value: 4.68e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2180480390 180 AVHMSRKDFDKAIADYTLVLKTKKNSASILHQRAIAHKAAGEMEQAVADFSRILKNN--DKDRRAVMGR 246
Cdd:pfam13371 3 AIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELApdAPDAEAIREL 71
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
248-325 |
5.35e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.51 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 248 YVHFQNGNHAAAIDDFAKAIELDPSDAVAWN---NRGYNLSRLGRDAEAIKDYDKSLEIAP---KYALAMQNRAWLLATS 321
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLEL 80
|
....
gi 2180480390 322 ENED 325
Cdd:COG1729 81 GDYD 84
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
143-276 |
5.61e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 39.30 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 143 SRGLFHAEMGSFDKAIADYDKALEV---DPESIAPIinrAAVHMSRKDFDKAIADYTLVLKTKKNSASI----------- 208
Cdd:PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAnpkDSEALGAL---GQAYSQQGDRARAVAQFEKALALDPHSSNRdkwesllkvnr 350
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2180480390 209 ---LHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVA 276
Cdd:PRK11447 351 ywlLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
110-170 |
7.93e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 37.99 E-value: 7.93e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2180480390 110 RAAAWWALGKTEQAVLDFDKAIELGYTEAHAYTSRGLFHAEMGSFDKAIADYDKALEVDPE 170
Cdd:cd24142 6 KAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
|
|
| SH3_9 |
pfam14604 |
Variant SH3 domain; |
50-81 |
8.13e-03 |
|
Variant SH3 domain;
Pssm-ID: 434066 [Multi-domain] Cd Length: 49 Bit Score: 34.13 E-value: 8.13e-03
10 20 30
....*....|....*....|....*....|..
gi 2180480390 50 IEKGDLLTVIEERDDDYVIVTHDGSKGAVDKN 81
Cdd:pfam14604 15 LQRGDVITVIEESEDGWWEGINTGRTGLVPAN 46
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
209-315 |
9.11e-03 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 36.50 E-value: 9.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2180480390 209 LHQRAIAHKAAGEMEQAVADFSRILKNNDKDRRAVMGRGYVHFQNGNHAAAIDDFAKAIELDPSDAVAWNNRGYNLSRLG 288
Cdd:TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99
|
90 100 110
....*....|....*....|....*....|
gi 2180480390 289 RDAEAIKDYDKSLEIA---PKYAlAMQNRA 315
Cdd:TIGR02552 100 EPESALKALDLAIEICgenPEYS-ELKERA 128
|
|
| |
