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Conserved domains on  [gi|2185787405|ref|WP_236690880|]
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DUF3923 family protein [Lysinibacillus xylanilyticus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3923 super family cl16067
Protein of unknown function (DUF3923); This family of proteins is functionally uncharacterized. ...
 4-67 2.47e-08

Protein of unknown function (DUF3923); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.


The actual alignment was detected with superfamily member pfam13061:

Pssm-ID: 404063  Cd Length: 65  Bit Score: 45.78  E-value: 2.47e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2185787405  4 KIWWAINIVWLFIFAAGAIFIGVREVDYTGVVQTPEVRLVSFIVLGIAFFIVVLFQLILLIFIH 67
Cdd:pfam13061  2 KLWWISNIFWILLFVIGALFIWTRKVDGAGVVQTPELKLISLLVLLIAFVFILIFQLIWLIILK 65
 
Name Accession Description Interval E-value
DUF3923 pfam13061
Protein of unknown function (DUF3923); This family of proteins is functionally uncharacterized. ...
 4-67 2.47e-08

Protein of unknown function (DUF3923); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.


Pssm-ID: 404063  Cd Length: 65  Bit Score: 45.78  E-value: 2.47e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2185787405  4 KIWWAINIVWLFIFAAGAIFIGVREVDYTGVVQTPEVRLVSFIVLGIAFFIVVLFQLILLIFIH 67
Cdd:pfam13061  2 KLWWISNIFWILLFVIGALFIWTRKVDGAGVVQTPELKLISLLVLLIAFVFILIFQLIWLIILK 65
 
Name Accession Description Interval E-value
DUF3923 pfam13061
Protein of unknown function (DUF3923); This family of proteins is functionally uncharacterized. ...
 4-67 2.47e-08

Protein of unknown function (DUF3923); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.


Pssm-ID: 404063  Cd Length: 65  Bit Score: 45.78  E-value: 2.47e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2185787405  4 KIWWAINIVWLFIFAAGAIFIGVREVDYTGVVQTPEVRLVSFIVLGIAFFIVVLFQLILLIFIH 67
Cdd:pfam13061  2 KLWWISNIFWILLFVIGALFIWTRKVDGAGVVQTPELKLISLLVLLIAFVFILIFQLIWLIILK 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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