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phage/plasmid primase, P4 family [Bacillus sp. Man122]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
COG3378
COG3378 DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons];
348-770
1.24e-147
DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons];
Pssm-ID: 442605 [Multi-domain]
Cd Length: 403
Bit Score: 438.99
E-value: 1.24e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 348 Y CN E LD - W LIWN G KM WEED SK r QIEA L TAQT LRAI Y geakatedgyrkkql ND WAKK CERRN i R MNTI L DT rp MV A VRKQ 426
Cdd:COG3378 1 Y VP E TG k W YVYD G GR WEED DG - EVRR L IKEL LRAI L --------------- AK WAKK SRSSR - R IKAV L EL -- LK A ELPD 61
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 427 D LD SHKY L F N CE NGV I DL K TGEL L PH DRDFLF TK ISS V A Y QK DA D CP N W KA FL ES IF ideqg QSNY E I ID FM Q K A I GY S L 506
Cdd:COG3378 62 E LD ADPN L I N VK NGV L DL R TGEL R PH SPEDYL TK VLP V E Y DP DA K CP R W LK FL DE IF ----- PGDK E L ID LL Q E A L GY C L 136
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 507 TG D T T EQ VM FFL F G N G R NGKSTF I N TVQQ LLG - D YGRQTNSD T FIKKKN D ssinnd I ARL D G A R FVS A V E S EEG QQ L S ES 585
Cdd:COG3378 137 TG R T S EQ KF FFL Y G P G G NGKSTF L N LLTA LLG k D NASSASLE T LTENRF D ------ L ARL K G K R LNI A S E L EEG YR L D ES 210
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 586 L V K QI TGG EKMS AR FLRQEY F E F T P EF K VF F T TNH K P IVKGS D E GIWRR IRLV PF T VT I P K E KV D KK L PQ KL AA E M PGIL 665
Cdd:COG3378 211 L L K AL TGG DPIT AR RKYKDP F S F K P TA K LL F A TNH L P RIRDT D D GIWRR LLII PF N VT F P E E ER D PN L KE KL LE E L PGIL 290
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 666 R WA V EG C L KWQKE - GL K EPE VIRK ATE G YRE DM D I LG PYMS E R C VVH P S A KIEA K E LY KD Y KN WC YE N D E IE L KN R A F YR 744
Cdd:COG3378 291 N WA L EG L L RLLEN g GL T EPE SVKE ATE E YRE ES D P LG AFLE E C C ELD P G A RVPK K D LY EA Y RE WC ED N G E KP L SK R T F GK 370
410 420
....*....|....*....|....*....
gi 2192425830 745 QIEIR GF KK E --- NGAENKVFFY GI G L NK 770
Cdd:COG3378 371 ELKKL GF EY E krr TNGGKRRGYR GI R L KD 399
COG4983
COG4983 Primase-polymerase (Primpol) domain protein [Mobilome: prophages, transposons];
8-380
2.85e-90
Primase-polymerase (Primpol) domain protein [Mobilome: prophages, transposons];
Pssm-ID: 444007 [Multi-domain]
Cd Length: 511
Bit Score: 293.78
E-value: 2.85e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 8 P Q ELK NAP QW I LWR S E E R N GK K TKVPY Q - ID G SM A Q S SNKR TW S TF A T IMKFFNEQE YDG I GF MFSK DDP FI GID I D H C V 86
Cdd:COG4983 1 P E ELK ERA QW V LWR Y E Q R D GK P TKVPY N p AT G GP A S S TDPE TW A TF D T ALEAAERGG YDG V GF VLTE DDP LV GID L D D C R 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 87 KD -- G VLSPF A QE I IQTIS SYTE Y SPSG E G V HI IAK G K LP lrgpgt G RK N IDK G L E V Y RH GR Y FT F TG NS L DVG P -- VQ E 162
Cdd:COG4983 81 DP et G EIDEW A RD I VERLD SYTE V SPSG T G L HI FVR G E LP ------ G GG N RKG G I E I Y DT GR F FT V TG DH L PGT P te IA E 154
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 163 R SEEIKS I F D K Y L t EKEEVRP A STRSQSTS D isnlsn K E IW ER MFNS KNG KSIQD L FN G - QLIN G DH S ST D M ALC NH LAF 241
Cdd:COG4983 155 R QDALDA I Y D E Y F - GATDPSK A EDEPVDLD D ------ E E LL ER ARKA KNG EKFRR L WS G d TSGY G SQ S EA D L ALC SL LAF 227
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 242 WT DK D ASK MD SM F resslfr EKWDR Q H S ad G A TYGE M TI A - A AIYST G STISDLMEQQEQPY EV YFSQPQASQVA D TEEI 320
Cdd:COG4983 228 WT GG D REQ MD RL F ------- EKWDR V H G -- G E TYGE R TI E k A ILPTG G AIAEVDEDVALDAE EV DDELGGDDARD D KDAT 298
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2192425830 321 I ----- DT PPVFHLTELGNAER L VYYH G K N IRYCNELDWLIWN ------ GKMW -- EE DSKR Q IE A LTAQT L R A 380
Cdd:COG4983 299 S lapeg DT AAERREALENDEGS L SDAG G E N EEGDDGVTDEEVK lggggt APGA ai EE RIAF Q DA A GFGER L A A 371
Name
Accession
Description
Interval
E-value
COG3378
COG3378 DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons];
348-770
1.24e-147
DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons];
Pssm-ID: 442605 [Multi-domain]
Cd Length: 403
Bit Score: 438.99
E-value: 1.24e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 348 Y CN E LD - W LIWN G KM WEED SK r QIEA L TAQT LRAI Y geakatedgyrkkql ND WAKK CERRN i R MNTI L DT rp MV A VRKQ 426
Cdd:COG3378 1 Y VP E TG k W YVYD G GR WEED DG - EVRR L IKEL LRAI L --------------- AK WAKK SRSSR - R IKAV L EL -- LK A ELPD 61
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 427 D LD SHKY L F N CE NGV I DL K TGEL L PH DRDFLF TK ISS V A Y QK DA D CP N W KA FL ES IF ideqg QSNY E I ID FM Q K A I GY S L 506
Cdd:COG3378 62 E LD ADPN L I N VK NGV L DL R TGEL R PH SPEDYL TK VLP V E Y DP DA K CP R W LK FL DE IF ----- PGDK E L ID LL Q E A L GY C L 136
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 507 TG D T T EQ VM FFL F G N G R NGKSTF I N TVQQ LLG - D YGRQTNSD T FIKKKN D ssinnd I ARL D G A R FVS A V E S EEG QQ L S ES 585
Cdd:COG3378 137 TG R T S EQ KF FFL Y G P G G NGKSTF L N LLTA LLG k D NASSASLE T LTENRF D ------ L ARL K G K R LNI A S E L EEG YR L D ES 210
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 586 L V K QI TGG EKMS AR FLRQEY F E F T P EF K VF F T TNH K P IVKGS D E GIWRR IRLV PF T VT I P K E KV D KK L PQ KL AA E M PGIL 665
Cdd:COG3378 211 L L K AL TGG DPIT AR RKYKDP F S F K P TA K LL F A TNH L P RIRDT D D GIWRR LLII PF N VT F P E E ER D PN L KE KL LE E L PGIL 290
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 666 R WA V EG C L KWQKE - GL K EPE VIRK ATE G YRE DM D I LG PYMS E R C VVH P S A KIEA K E LY KD Y KN WC YE N D E IE L KN R A F YR 744
Cdd:COG3378 291 N WA L EG L L RLLEN g GL T EPE SVKE ATE E YRE ES D P LG AFLE E C C ELD P G A RVPK K D LY EA Y RE WC ED N G E KP L SK R T F GK 370
410 420
....*....|....*....|....*....
gi 2192425830 745 QIEIR GF KK E --- NGAENKVFFY GI G L NK 770
Cdd:COG3378 371 ELKKL GF EY E krr TNGGKRRGYR GI R L KD 399
PRK07078
PRK07078 hypothetical protein; Validated
314-770
5.83e-122
hypothetical protein; Validated
Pssm-ID: 235927 [Multi-domain]
Cd Length: 759
Bit Score: 384.89
E-value: 5.83e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 314 V A D TEEIIDTPPVFHL TE LGN A ERLVYYHGKNI RYC NEL - D WL I W N G KM W EEDSKRQIEA L taqt L R AIYG EA KATE D GY 392
Cdd:PRK07078 306 V D D PAPVDLSDESVWA TE DAL A LAFTRRYKDDW RYC ALW g K WL V W T G SR W RTEDTLLATH L ---- I R GVCR EA ALKA D SP 381
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 393 RKK qlndw AK KCERRNIR - MNTILDTRPMV A VRKQDL D SHKY L F N CEN GV I DL K TG E L L PH D R DFLF TKI SSVAYQ kd A D 471
Cdd:PRK07078 382 KVA ----- AK LASAATVG g VERLARSDRRH A ATSEEW D ADPW L L N TPG GV V DL R TG R L R PH R R EDRM TKI TTATPA -- G D 454
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 472 CP N W KA FL esifi D E QGQSNY E IIDFM Q KAI GY S LTG D T T E QVM FFL F G N G R NGKS T F I NT VQQL LGDY GRQTNS DTF IK 551
Cdd:PRK07078 455 CP T W RR FL ----- A E VTGGDA E LQAYL Q RMA GY A LTG S T S E HAL FFL Y G T G A NGKS V F V NT LATI LGDY AANAPM DTF ME 529
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 552 KKN D SS i NN D I A R L D GARFVSA V E S E E G QQLS ES L VK QI TGG E K M SARF L RQ EY FEF T P E FK VFFTT NHKP IVKGS DE GI 631
Cdd:PRK07078 530 TRG D RH - PT D L A G L R GARFVSA I E T E Q G RRWA ES K VK NL TGG D K I SARF M RQ DF FEF F P Q FK LLIAG NHKP AIRNV DE AM 608
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 632 W RR IR L V PFTVT I P K E KV DK K L P QKL A AE MP GIL R WAVEGCL K WQ KE GL KE P EVIRK ATE G Y R E DM D I LG PYMS ERC VVH 711
Cdd:PRK07078 609 K RR LH L I PFTVT V P P E RR DK R L Q QKL L AE RD GIL A WAVEGCL D WQ RN GL DP P QSVVE ATE E Y F E AE D A LG QWIE ERC ERG 688
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 2192425830 712 PS AK IEAK EL YK D Y K N W CYEND E IELKNRA F YRQIEI RGF K K ENGAENKVF F Y GIGL NK 770
Cdd:PRK07078 689 AN AK ELTA EL FN D W K E W AERAG E FVGSQKR F SDLLAT RGF E K WRLTGGLRG F R GIGL KP 747
primase_Cterm
TIGR01613 phage/plasmid primase, P4 family, C-terminal domain; This model represents a clade within a ...
433-742
2.43e-116
phage/plasmid primase, P4 family, C-terminal domain; This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273716 [Multi-domain]
Cd Length: 304
Bit Score: 354.34
E-value: 2.43e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 433 Y LF N CE NGV I DL K TG E L L PHD R D FLF T KISSVA Y QKD ADCP N W KA FL ESI F IDEQ gqsny E I I DFM Q KA IGYSLTG DT TE 512
Cdd:TIGR01613 1 Y KL N VA NGV Y DL R TG Q L E PHD P D EIH T RKITTE Y DPK ADCP T W NG FL LET F GGDN ----- E L I EYL Q RV IGYSLTG NY TE 75
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 513 Q VM FFL F GNG R NGKSTF I N TVQQ LLGDY GRQTNSDTFIKKKNDS si NNDI ARL D G A R F V SAV E SEE G QQLS ES LV K QI TG 592
Cdd:TIGR01613 76 Q KL FFL Y GNG G NGKSTF Q N LLSN LLGDY AITAVASLKMNELSEH -- RFGL ARL E G K R A V IGD E VQK G YRDD ES TF K SL TG 153
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 593 G EKMS ARF LRQEY FEFTP E F KVFFT TNH K P IVK G S D E GI W RR I R LV PFT VTI P K EK VD K K L PQKLAA E MPG IL R WAVEG C 672
Cdd:TIGR01613 154 G DTIT ARF KNKDP FEFTP K F TLVQS TNH L P RIR G F D G GI K RR L R II PFT KVF P G EK KN K A L KEDYIN E KDV IL Y WAVEG I 233
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2192425830 673 LKW Q KE G - LKE P EVIRK ATE G Y R E DM D ILGPYMS E R C VVHPSA K IEAKEL Y KD YK N WC Y E NDEIE L KNRA F 742
Cdd:TIGR01613 234 RLD Q RI G d FSI P KAVLE ATE E Y K E EN D VVARFLE E C C DDSEGE K VPVRFV Y EA YK E WC E E GGYPI L SRNK F 304
COG4983
COG4983 Primase-polymerase (Primpol) domain protein [Mobilome: prophages, transposons];
8-380
2.85e-90
Primase-polymerase (Primpol) domain protein [Mobilome: prophages, transposons];
Pssm-ID: 444007 [Multi-domain]
Cd Length: 511
Bit Score: 293.78
E-value: 2.85e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 8 P Q ELK NAP QW I LWR S E E R N GK K TKVPY Q - ID G SM A Q S SNKR TW S TF A T IMKFFNEQE YDG I GF MFSK DDP FI GID I D H C V 86
Cdd:COG4983 1 P E ELK ERA QW V LWR Y E Q R D GK P TKVPY N p AT G GP A S S TDPE TW A TF D T ALEAAERGG YDG V GF VLTE DDP LV GID L D D C R 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 87 KD -- G VLSPF A QE I IQTIS SYTE Y SPSG E G V HI IAK G K LP lrgpgt G RK N IDK G L E V Y RH GR Y FT F TG NS L DVG P -- VQ E 162
Cdd:COG4983 81 DP et G EIDEW A RD I VERLD SYTE V SPSG T G L HI FVR G E LP ------ G GG N RKG G I E I Y DT GR F FT V TG DH L PGT P te IA E 154
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 163 R SEEIKS I F D K Y L t EKEEVRP A STRSQSTS D isnlsn K E IW ER MFNS KNG KSIQD L FN G - QLIN G DH S ST D M ALC NH LAF 241
Cdd:COG4983 155 R QDALDA I Y D E Y F - GATDPSK A EDEPVDLD D ------ E E LL ER ARKA KNG EKFRR L WS G d TSGY G SQ S EA D L ALC SL LAF 227
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 242 WT DK D ASK MD SM F resslfr EKWDR Q H S ad G A TYGE M TI A - A AIYST G STISDLMEQQEQPY EV YFSQPQASQVA D TEEI 320
Cdd:COG4983 228 WT GG D REQ MD RL F ------- EKWDR V H G -- G E TYGE R TI E k A ILPTG G AIAEVDEDVALDAE EV DDELGGDDARD D KDAT 298
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2192425830 321 I ----- DT PPVFHLTELGNAER L VYYH G K N IRYCNELDWLIWN ------ GKMW -- EE DSKR Q IE A LTAQT L R A 380
Cdd:COG4983 299 S lapeg DT AAERREALENDEGS L SDAG G E N EEGDDGVTDEEVK lggggt APGA ai EE RIAF Q DA A GFGER L A A 371
D5_N
pfam08706 D5 N terminal like; This domain is found in D5 proteins of DNA viruses and bacteriophage P4 ...
335-483
1.49e-41
D5 N terminal like; This domain is found in D5 proteins of DNA viruses and bacteriophage P4 DNA primases phages.
Pssm-ID: 378029 [Multi-domain]
Cd Length: 145
Bit Score: 148.77
E-value: 1.49e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 335 AERL VYYH GK NI RY CNE L - D W LI W N GK M W E EDSK RQ I EA L TAQT LR A I YG EA K A tedgyr K K Q L NDW AK KCERRNIRM N T 413
Cdd:pfam08706 1 AERL RDRY GK DL RY VPG L g G W YV W D GK R W R EDSK KA I RE L ADKL LR K I LR EA E A ------ L K E L RKF AK RSRSKKGVK N V 74
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 414 ILDTRP M VA V RKQD LD SHK YL F N CE NGV I DL K TGEL L PHD RDFLF TKI SS V A Y QK DADCP N WK A FLE S IF 483
Cdd:pfam08706 75 LKEAKA M LD V TLDE LD ADP YL L N FP NGV L DL R TGEL R PHD PEDRL TKI TP V D Y DP DADCP E WK Q FLE D IF 144
D5_N
smart00885 D5 N terminal like; This domain is found in D5 proteins of DNA viruses and bacteriophage P4 ...
335-483
3.73e-39
D5 N terminal like; This domain is found in D5 proteins of DNA viruses and bacteriophage P4 DNA primases phages.
Pssm-ID: 197953 [Multi-domain]
Cd Length: 141
Bit Score: 141.73
E-value: 3.73e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 335 AERL VYYH G KNI RY CN E LD - W LIWN G KM WE E D SKR qie A L TAQTL RA IYG EA KATED gyr K K Q L N D WA KK CERRNIRMNT 413
Cdd:smart00885 1 AERL AEHY G DRL RY VP E TG k W YVYD G GI WE P D EDL --- E L ARKLI RA LLP EA AELSE --- R K K L R D EV KK ALTASALEAL 74
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 414 ILDTR pmva V RKQD LD SHKY L F N CE NGV I DL K TGEL L PHD RDFLF TK ISS VAY QKD A D CP N W KA FL ES IF 483
Cdd:smart00885 75 LKEAP ---- V TPEE LD ADPH L I N FP NGV L DL R TGEL R PHD PEDYI TK KIP VAY DPN A K CP R W DG FL NE IF 140
Name
Accession
Description
Interval
E-value
COG3378
COG3378 DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons];
348-770
1.24e-147
DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons];
Pssm-ID: 442605 [Multi-domain]
Cd Length: 403
Bit Score: 438.99
E-value: 1.24e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 348 Y CN E LD - W LIWN G KM WEED SK r QIEA L TAQT LRAI Y geakatedgyrkkql ND WAKK CERRN i R MNTI L DT rp MV A VRKQ 426
Cdd:COG3378 1 Y VP E TG k W YVYD G GR WEED DG - EVRR L IKEL LRAI L --------------- AK WAKK SRSSR - R IKAV L EL -- LK A ELPD 61
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 427 D LD SHKY L F N CE NGV I DL K TGEL L PH DRDFLF TK ISS V A Y QK DA D CP N W KA FL ES IF ideqg QSNY E I ID FM Q K A I GY S L 506
Cdd:COG3378 62 E LD ADPN L I N VK NGV L DL R TGEL R PH SPEDYL TK VLP V E Y DP DA K CP R W LK FL DE IF ----- PGDK E L ID LL Q E A L GY C L 136
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 507 TG D T T EQ VM FFL F G N G R NGKSTF I N TVQQ LLG - D YGRQTNSD T FIKKKN D ssinnd I ARL D G A R FVS A V E S EEG QQ L S ES 585
Cdd:COG3378 137 TG R T S EQ KF FFL Y G P G G NGKSTF L N LLTA LLG k D NASSASLE T LTENRF D ------ L ARL K G K R LNI A S E L EEG YR L D ES 210
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 586 L V K QI TGG EKMS AR FLRQEY F E F T P EF K VF F T TNH K P IVKGS D E GIWRR IRLV PF T VT I P K E KV D KK L PQ KL AA E M PGIL 665
Cdd:COG3378 211 L L K AL TGG DPIT AR RKYKDP F S F K P TA K LL F A TNH L P RIRDT D D GIWRR LLII PF N VT F P E E ER D PN L KE KL LE E L PGIL 290
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 666 R WA V EG C L KWQKE - GL K EPE VIRK ATE G YRE DM D I LG PYMS E R C VVH P S A KIEA K E LY KD Y KN WC YE N D E IE L KN R A F YR 744
Cdd:COG3378 291 N WA L EG L L RLLEN g GL T EPE SVKE ATE E YRE ES D P LG AFLE E C C ELD P G A RVPK K D LY EA Y RE WC ED N G E KP L SK R T F GK 370
410 420
....*....|....*....|....*....
gi 2192425830 745 QIEIR GF KK E --- NGAENKVFFY GI G L NK 770
Cdd:COG3378 371 ELKKL GF EY E krr TNGGKRRGYR GI R L KD 399
PRK07078
PRK07078 hypothetical protein; Validated
314-770
5.83e-122
hypothetical protein; Validated
Pssm-ID: 235927 [Multi-domain]
Cd Length: 759
Bit Score: 384.89
E-value: 5.83e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 314 V A D TEEIIDTPPVFHL TE LGN A ERLVYYHGKNI RYC NEL - D WL I W N G KM W EEDSKRQIEA L taqt L R AIYG EA KATE D GY 392
Cdd:PRK07078 306 V D D PAPVDLSDESVWA TE DAL A LAFTRRYKDDW RYC ALW g K WL V W T G SR W RTEDTLLATH L ---- I R GVCR EA ALKA D SP 381
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 393 RKK qlndw AK KCERRNIR - MNTILDTRPMV A VRKQDL D SHKY L F N CEN GV I DL K TG E L L PH D R DFLF TKI SSVAYQ kd A D 471
Cdd:PRK07078 382 KVA ----- AK LASAATVG g VERLARSDRRH A ATSEEW D ADPW L L N TPG GV V DL R TG R L R PH R R EDRM TKI TTATPA -- G D 454
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 472 CP N W KA FL esifi D E QGQSNY E IIDFM Q KAI GY S LTG D T T E QVM FFL F G N G R NGKS T F I NT VQQL LGDY GRQTNS DTF IK 551
Cdd:PRK07078 455 CP T W RR FL ----- A E VTGGDA E LQAYL Q RMA GY A LTG S T S E HAL FFL Y G T G A NGKS V F V NT LATI LGDY AANAPM DTF ME 529
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 552 KKN D SS i NN D I A R L D GARFVSA V E S E E G QQLS ES L VK QI TGG E K M SARF L RQ EY FEF T P E FK VFFTT NHKP IVKGS DE GI 631
Cdd:PRK07078 530 TRG D RH - PT D L A G L R GARFVSA I E T E Q G RRWA ES K VK NL TGG D K I SARF M RQ DF FEF F P Q FK LLIAG NHKP AIRNV DE AM 608
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 632 W RR IR L V PFTVT I P K E KV DK K L P QKL A AE MP GIL R WAVEGCL K WQ KE GL KE P EVIRK ATE G Y R E DM D I LG PYMS ERC VVH 711
Cdd:PRK07078 609 K RR LH L I PFTVT V P P E RR DK R L Q QKL L AE RD GIL A WAVEGCL D WQ RN GL DP P QSVVE ATE E Y F E AE D A LG QWIE ERC ERG 688
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 2192425830 712 PS AK IEAK EL YK D Y K N W CYEND E IELKNRA F YRQIEI RGF K K ENGAENKVF F Y GIGL NK 770
Cdd:PRK07078 689 AN AK ELTA EL FN D W K E W AERAG E FVGSQKR F SDLLAT RGF E K WRLTGGLRG F R GIGL KP 747
primase_Cterm
TIGR01613 phage/plasmid primase, P4 family, C-terminal domain; This model represents a clade within a ...
433-742
2.43e-116
phage/plasmid primase, P4 family, C-terminal domain; This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273716 [Multi-domain]
Cd Length: 304
Bit Score: 354.34
E-value: 2.43e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 433 Y LF N CE NGV I DL K TG E L L PHD R D FLF T KISSVA Y QKD ADCP N W KA FL ESI F IDEQ gqsny E I I DFM Q KA IGYSLTG DT TE 512
Cdd:TIGR01613 1 Y KL N VA NGV Y DL R TG Q L E PHD P D EIH T RKITTE Y DPK ADCP T W NG FL LET F GGDN ----- E L I EYL Q RV IGYSLTG NY TE 75
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 513 Q VM FFL F GNG R NGKSTF I N TVQQ LLGDY GRQTNSDTFIKKKNDS si NNDI ARL D G A R F V SAV E SEE G QQLS ES LV K QI TG 592
Cdd:TIGR01613 76 Q KL FFL Y GNG G NGKSTF Q N LLSN LLGDY AITAVASLKMNELSEH -- RFGL ARL E G K R A V IGD E VQK G YRDD ES TF K SL TG 153
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 593 G EKMS ARF LRQEY FEFTP E F KVFFT TNH K P IVK G S D E GI W RR I R LV PFT VTI P K EK VD K K L PQKLAA E MPG IL R WAVEG C 672
Cdd:TIGR01613 154 G DTIT ARF KNKDP FEFTP K F TLVQS TNH L P RIR G F D G GI K RR L R II PFT KVF P G EK KN K A L KEDYIN E KDV IL Y WAVEG I 233
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2192425830 673 LKW Q KE G - LKE P EVIRK ATE G Y R E DM D ILGPYMS E R C VVHPSA K IEAKEL Y KD YK N WC Y E NDEIE L KNRA F 742
Cdd:TIGR01613 234 RLD Q RI G d FSI P KAVLE ATE E Y K E EN D VVARFLE E C C DDSEGE K VPVRFV Y EA YK E WC E E GGYPI L SRNK F 304
PRK14709
PRK14709 hypothetical protein; Provisional
329-768
3.05e-114
hypothetical protein; Provisional
Pssm-ID: 173172 [Multi-domain]
Cd Length: 469
Bit Score: 355.18
E-value: 3.05e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 329 LTE LGN A ERLVYYH G KNI R Y C NELD - W LI W N G KM W EE D SKR qiea L TAQTL R ----- AIY GE AKATEDGYR K KQLNDWAK 402
Cdd:PRK14709 34 LTE DSV A AVFAERY G GRL R F C HDTG k W FE W T G TA W KQ D RVG ---- L AFHWA R elvre MCR GE PPKLRYIAS K ASFAGGVE 109
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 403 K CE R rnirmntild T R P MV AV RKQ D L D SHKY L FNCEN G VI DL K TG E L LPH D RDFLF T KISS VA YQKD ADCP N W KA FL ESI 482
Cdd:PRK14709 110 K FA R ---------- T D P RF AV TSE D W D ADPW L LGTPG G TV DL R TG K L RAA D PEDMI T RLTA VA PADT ADCP R W LR FL DEA 179
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 483 F ideqg QSNY E I I D F M Q KAI GY S LTGDT T E QVMF F L FG N G R NGKS T F I N TVQQL LGDY GRQTNS DTF IKK K N D SS i NN D I 562
Cdd:PRK14709 180 T ----- GGDD E L I R F L Q QWC GY C LTGDT R E HALV F V FG G G G NGKS V F L N VLAGI LGDY ATTAAM DTF TAS K H D RH - PT D L 253
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 563 A R L D GAR F V S A V E S EEG QQLS E SLV KQ I TGG EKMS ARF L RQ EY FEF T P E FK VFFTT NHKP IVKGS DE GIW RR IRL VPFT V 642
Cdd:PRK14709 254 A M L R GAR L V T A S E T EEG RAWA E ARI KQ M TGG DTIT ARF M RQ DF FEF V P Q FK LTIVG NHKP RLRNV DE AAR RR FNI VPFT R 333
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 643 T ip KEKV D KK L PQ KL A AE M P G ILRW AVE GCL K WQ KE GL KE P EVIRK ATE G Y REDM D IL G PYMS ERC V V H P SAKIEAKE L Y 722
Cdd:PRK14709 334 K -- PARP D PD L EA KL R AE W P A ILRW MID GCL D WQ AN GL VR P AAVTE ATE E Y FAEQ D TF G QWLE ERC I V D P GNPVCWDV L Q 411
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 2192425830 723 KD Y KN WC ---- Y E NDEIE l KNRA F YRQI E IR GFKK ENGAENKV f F Y GI G L 768
Cdd:PRK14709 412 DL Y AS WC efar A E GEPAG - TAKE F GERM E KL GFKK DRKNRGRG - F R GI Q L 459
COG4983
COG4983 Primase-polymerase (Primpol) domain protein [Mobilome: prophages, transposons];
8-380
2.85e-90
Primase-polymerase (Primpol) domain protein [Mobilome: prophages, transposons];
Pssm-ID: 444007 [Multi-domain]
Cd Length: 511
Bit Score: 293.78
E-value: 2.85e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 8 P Q ELK NAP QW I LWR S E E R N GK K TKVPY Q - ID G SM A Q S SNKR TW S TF A T IMKFFNEQE YDG I GF MFSK DDP FI GID I D H C V 86
Cdd:COG4983 1 P E ELK ERA QW V LWR Y E Q R D GK P TKVPY N p AT G GP A S S TDPE TW A TF D T ALEAAERGG YDG V GF VLTE DDP LV GID L D D C R 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 87 KD -- G VLSPF A QE I IQTIS SYTE Y SPSG E G V HI IAK G K LP lrgpgt G RK N IDK G L E V Y RH GR Y FT F TG NS L DVG P -- VQ E 162
Cdd:COG4983 81 DP et G EIDEW A RD I VERLD SYTE V SPSG T G L HI FVR G E LP ------ G GG N RKG G I E I Y DT GR F FT V TG DH L PGT P te IA E 154
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 163 R SEEIKS I F D K Y L t EKEEVRP A STRSQSTS D isnlsn K E IW ER MFNS KNG KSIQD L FN G - QLIN G DH S ST D M ALC NH LAF 241
Cdd:COG4983 155 R QDALDA I Y D E Y F - GATDPSK A EDEPVDLD D ------ E E LL ER ARKA KNG EKFRR L WS G d TSGY G SQ S EA D L ALC SL LAF 227
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 242 WT DK D ASK MD SM F resslfr EKWDR Q H S ad G A TYGE M TI A - A AIYST G STISDLMEQQEQPY EV YFSQPQASQVA D TEEI 320
Cdd:COG4983 228 WT GG D REQ MD RL F ------- EKWDR V H G -- G E TYGE R TI E k A ILPTG G AIAEVDEDVALDAE EV DDELGGDDARD D KDAT 298
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2192425830 321 I ----- DT PPVFHLTELGNAER L VYYH G K N IRYCNELDWLIWN ------ GKMW -- EE DSKR Q IE A LTAQT L R A 380
Cdd:COG4983 299 S lapeg DT AAERREALENDEGS L SDAG G E N EEGDDGVTDEEVK lggggt APGA ai EE RIAF Q DA A GFGER L A A 371
D5_N
pfam08706 D5 N terminal like; This domain is found in D5 proteins of DNA viruses and bacteriophage P4 ...
335-483
1.49e-41
D5 N terminal like; This domain is found in D5 proteins of DNA viruses and bacteriophage P4 DNA primases phages.
Pssm-ID: 378029 [Multi-domain]
Cd Length: 145
Bit Score: 148.77
E-value: 1.49e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 335 AERL VYYH GK NI RY CNE L - D W LI W N GK M W E EDSK RQ I EA L TAQT LR A I YG EA K A tedgyr K K Q L NDW AK KCERRNIRM N T 413
Cdd:pfam08706 1 AERL RDRY GK DL RY VPG L g G W YV W D GK R W R EDSK KA I RE L ADKL LR K I LR EA E A ------ L K E L RKF AK RSRSKKGVK N V 74
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 414 ILDTRP M VA V RKQD LD SHK YL F N CE NGV I DL K TGEL L PHD RDFLF TKI SS V A Y QK DADCP N WK A FLE S IF 483
Cdd:pfam08706 75 LKEAKA M LD V TLDE LD ADP YL L N FP NGV L DL R TGEL R PHD PEDRL TKI TP V D Y DP DADCP E WK Q FLE D IF 144
D5_N
smart00885 D5 N terminal like; This domain is found in D5 proteins of DNA viruses and bacteriophage P4 ...
335-483
3.73e-39
D5 N terminal like; This domain is found in D5 proteins of DNA viruses and bacteriophage P4 DNA primases phages.
Pssm-ID: 197953 [Multi-domain]
Cd Length: 141
Bit Score: 141.73
E-value: 3.73e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 335 AERL VYYH G KNI RY CN E LD - W LIWN G KM WE E D SKR qie A L TAQTL RA IYG EA KATED gyr K K Q L N D WA KK CERRNIRMNT 413
Cdd:smart00885 1 AERL AEHY G DRL RY VP E TG k W YVYD G GI WE P D EDL --- E L ARKLI RA LLP EA AELSE --- R K K L R D EV KK ALTASALEAL 74
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192425830 414 ILDTR pmva V RKQD LD SHKY L F N CE NGV I DL K TGEL L PHD RDFLF TK ISS VAY QKD A D CP N W KA FL ES IF 483
Cdd:smart00885 75 LKEAP ---- V TPEE LD ADPH L I N FP NGV L DL R TGEL R PHD PEDYI TK KIP VAY DPN A K CP R W DG FL NE IF 140
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
