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Conserved domains on  [gi|2199885617|ref|WP_239817116|]
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5-oxoprolinase subunit PxpB [Campylobacter sp. RM5004]

Protein Classification

allophanate hydrolase subunit 1( domain architecture ID 10005226)

allophanate hydrolase subunit 1 (AHS1) converts allophanate to ammonium and carbon dioxide, and is essential for utilization of urea as a nitrogen source in bacteria

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
5-211 1.72e-83

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


:

Pssm-ID: 441652  Cd Length: 229  Bit Score: 247.36  E-value: 1.72e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617   5 FKIISETSLLLYLAPPISMQNQRLCYALNEELKNKA--HIKEVVVGMNSVYVL--TSDLNYKELLD-LQSELNELIKyik 79
Cdd:COG2049     7 ILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPlpGVVEVVPAYRSLLVHfdPLVIDPAALAArLRALLAELDA--- 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617  80 PLELNGKLVEIAVDYGGDLGLDLKVIAKAKGMSMSEFAKLHAEPIYDVYFIGFQPGFAYLGGLDIRLHTPRLSTPRLKIP 159
Cdd:COG2049    84 AAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRVP 163
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2199885617 160 AGSVGIGGAQTGIYPYQSPGGWNIIGNTKTKLFDINSDEPSLLKAGDKLKFV 211
Cdd:COG2049   164 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFV 215
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
5-211 1.72e-83

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 247.36  E-value: 1.72e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617   5 FKIISETSLLLYLAPPISMQNQRLCYALNEELKNKA--HIKEVVVGMNSVYVL--TSDLNYKELLD-LQSELNELIKyik 79
Cdd:COG2049     7 ILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPlpGVVEVVPAYRSLLVHfdPLVIDPAALAArLRALLAELDA--- 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617  80 PLELNGKLVEIAVDYGGDLGLDLKVIAKAKGMSMSEFAKLHAEPIYDVYFIGFQPGFAYLGGLDIRLHTPRLSTPRLKIP 159
Cdd:COG2049    84 AAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRVP 163
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2199885617 160 AGSVGIGGAQTGIYPYQSPGGWNIIGNTKTKLFDINSDEPSLLKAGDKLKFV 211
Cdd:COG2049   164 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFV 215
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
4-202 1.64e-77

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 231.29  E-value: 1.64e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617   4 EFKIISETSLLLYLAPPISMQNQRLCYALNEELKNKAH--IKEVVVGMNSVYVL--TSDLNYKELLD-LQSELNELIKyi 78
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAPLpgVVEVVPGYRSLLVHydPLVTDLAALEArLRALLAALEA-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617  79 kPLELNGKLVEIAVDYGGDLGLDLKVIAKAKGMSMSEFAKLHAEPIYDVYFIGFQPGFAYLGGLDIRLHTPRLSTPRLKI 158
Cdd:pfam02682  79 -AAAPGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRV 157
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2199885617 159 PAGSVGIGGAQTGIYPYQSPGGWNIIGNTKTKLFDINSDEPSLL 202
Cdd:pfam02682 158 PAGSVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPALL 201
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
8-200 6.01e-74

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 222.40  E-value: 6.01e-74
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617    8 ISETSLLLYLAPPISMQNQRLCYALNEELKNK--AHIKEVVVGMNSVYV--LTSDLNYKELLDLQSELnELIKYIKPLEL 83
Cdd:smart00796   6 AGDRALLVEFGDEIDLALNRRVLALARALRAAplPGVVELVPGYRSLLVhfDPLVIDPAALLARLRAL-EALPLAEALEV 84
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617   84 NGKLVEIAVDYGGDLGLDLKVIAKAKGMSMSEFAKLHAEPIYDVYFIGFQPGFAYLGGLDIRLHTPRLSTPRLKIPAGSV 163
Cdd:smart00796  85 PGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVPAGSV 164
                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 2199885617  164 GIGGAQTGIYPYQSPGGWNIIGNTKTKLFDINSDEPS 200
Cdd:smart00796 165 GIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
8-211 7.33e-74

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 222.04  E-value: 7.33e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617   8 ISETSLLLYLAPPISMQNQRLCYALNEELKNKAHIKEVVVGMNSVYVLTSdlNYKELLDLQSELNELIKYIKPLELNGKL 87
Cdd:TIGR00370   1 IGESAVVIRLGPPINEQVQGIVWAAAAYLEEQPGFVECIPGMNNLTVFYD--MYEVYKHLPQRLSSPWEEVKDYEVNRRI 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617  88 VEIAVDYGGDLGLDLKVIAKAKGMSMSEFAKLHAEPIYDVYFIGFQPGFAYLGGLDIRLHTPRLSTPRLKIPAGSVGIGG 167
Cdd:TIGR00370  79 IEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVGIGG 158
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2199885617 168 AQTGIYPYQSPGGWNIIGNTKTKLFDINSDEPSLLKAGDKLKFV 211
Cdd:TIGR00370 159 LQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKFV 202
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
5-211 1.72e-83

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 247.36  E-value: 1.72e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617   5 FKIISETSLLLYLAPPISMQNQRLCYALNEELKNKA--HIKEVVVGMNSVYVL--TSDLNYKELLD-LQSELNELIKyik 79
Cdd:COG2049     7 ILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPlpGVVEVVPAYRSLLVHfdPLVIDPAALAArLRALLAELDA--- 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617  80 PLELNGKLVEIAVDYGGDLGLDLKVIAKAKGMSMSEFAKLHAEPIYDVYFIGFQPGFAYLGGLDIRLHTPRLSTPRLKIP 159
Cdd:COG2049    84 AAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRVP 163
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2199885617 160 AGSVGIGGAQTGIYPYQSPGGWNIIGNTKTKLFDINSDEPSLLKAGDKLKFV 211
Cdd:COG2049   164 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFV 215
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
4-202 1.64e-77

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 231.29  E-value: 1.64e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617   4 EFKIISETSLLLYLAPPISMQNQRLCYALNEELKNKAH--IKEVVVGMNSVYVL--TSDLNYKELLD-LQSELNELIKyi 78
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAPLpgVVEVVPGYRSLLVHydPLVTDLAALEArLRALLAALEA-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617  79 kPLELNGKLVEIAVDYGGDLGLDLKVIAKAKGMSMSEFAKLHAEPIYDVYFIGFQPGFAYLGGLDIRLHTPRLSTPRLKI 158
Cdd:pfam02682  79 -AAAPGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRV 157
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2199885617 159 PAGSVGIGGAQTGIYPYQSPGGWNIIGNTKTKLFDINSDEPSLL 202
Cdd:pfam02682 158 PAGSVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPALL 201
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
8-200 6.01e-74

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 222.40  E-value: 6.01e-74
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617    8 ISETSLLLYLAPPISMQNQRLCYALNEELKNK--AHIKEVVVGMNSVYV--LTSDLNYKELLDLQSELnELIKYIKPLEL 83
Cdd:smart00796   6 AGDRALLVEFGDEIDLALNRRVLALARALRAAplPGVVELVPGYRSLLVhfDPLVIDPAALLARLRAL-EALPLAEALEV 84
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617   84 NGKLVEIAVDYGGDLGLDLKVIAKAKGMSMSEFAKLHAEPIYDVYFIGFQPGFAYLGGLDIRLHTPRLSTPRLKIPAGSV 163
Cdd:smart00796  85 PGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVPAGSV 164
                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 2199885617  164 GIGGAQTGIYPYQSPGGWNIIGNTKTKLFDINSDEPS 200
Cdd:smart00796 165 GIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
8-211 7.33e-74

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 222.04  E-value: 7.33e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617   8 ISETSLLLYLAPPISMQNQRLCYALNEELKNKAHIKEVVVGMNSVYVLTSdlNYKELLDLQSELNELIKYIKPLELNGKL 87
Cdd:TIGR00370   1 IGESAVVIRLGPPINEQVQGIVWAAAAYLEEQPGFVECIPGMNNLTVFYD--MYEVYKHLPQRLSSPWEEVKDYEVNRRI 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199885617  88 VEIAVDYGGDLGLDLKVIAKAKGMSMSEFAKLHAEPIYDVYFIGFQPGFAYLGGLDIRLHTPRLSTPRLKIPAGSVGIGG 167
Cdd:TIGR00370  79 IEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVGIGG 158
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2199885617 168 AQTGIYPYQSPGGWNIIGNTKTKLFDINSDEPSLLKAGDKLKFV 211
Cdd:TIGR00370 159 LQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKFV 202
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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