NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2222769220|ref|WP_244632826|]
View 

FAD-dependent oxidoreductase [Agrobacterium fabrum]

Protein Classification

RolB_RolC and Amino_oxidase domain-containing protein( domain architecture ID 12029847)

RolB_RolC and Amino_oxidase domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 224-707 7.14e-106

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


:

Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 330.61  E-value: 7.14e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 224 ISGLVVASELLHAAvDDVTIYEASDRVGGKLWSHAFKDapsVVAEMGAMRFPPAASCLFFFLERYGLSSMRPFPNPGTVD 303
Cdd:pfam01593   1 LAGLAAARELLRAG-HDVTVLEARDRVGGRIRTVRDDG---FLIELGAMWFHGAQPPLLALLKELGLEDRLVLPDPAPFY 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 304 TNLVYQGLRYmwkagqqpPKLFHRVYSGWRAFLKDGFhegdivlasPVAITQALKSGDIRRAHDSWqtwlNRFGRESFSS 383
Cdd:pfam01593  77 TVLFAGGRRY--------PGDFRRVPAGWEGLLEFGR---------LLSIPEKLRLGLAALASDAL----DEFDLDDFSL 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 384 AIERIFLGTHPPGG-ETWSFPHDWDLFKLMGIGSGGFG---PVFESGFIEILRLVINGYEENQRMCSEGISELPRRIATQ 459
Cdd:pfam01593 136 AESLLFLGRRGPGDvEVWDRLIDPELFAALPFASGAFAgdpSELSAGLALPLLWALLGEGGSLLLPRGGLGALPDALAAQ 215

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 460 VVnGVSVSQRIRhvqVRAIEKEKTKIKIRLKSGISELYDKVVVTSGLANIQlRHCLTCDTTifrAPVNQAVDNSHMTGSS 539
Cdd:pfam01593 216 LL-GGDVRLNTR---VRSIDREGDGVTVTLTDGEVIEADAVIVTVPLGVLK-RILFTPPLP---PEKARAIRNLGYGPVN 287

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 540 KLFLLTERKFWLDHIL--PSCVLMDGIAKAVYCLDYEPQDPNGKGLVLISYTWEDDSHKLLAVPDKKERFCLLRDAISRS 617
Cdd:pfam01593 288 KVHLEFDRKFWPDLGLlgLLSELLTGLGTAFSWLTFPNRAPPGKGLLLLVYVGPGDRARELEGLSDEELLQAVLRDLRKL 367

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 618 FPEfaqhlvpaCADYDQNVVQHDWLTDENAGGAFKLNRRGedfySEELFFQALDMTNDTGVYLAGCSCS--FTGGwVEGA 695
Cdd:pfam01593 368 FGE--------EAPEPLRVLVSDWHTDPWPRGSYSLPQYG----PGHDDYRPLARTPDPGLFFAGEHTStgYPGT-VEGA 434

                         490
                  ....*....|..
gi 2222769220 696 IQTACNAVCAII 707
Cdd:pfam01593 435 IESGRRAARAVL 446
RolB_RolC pfam02027
RolB/RolC glucosidase family; This family of proteins includes RolB and RolC. RolC releases ...
 1-173 4.69e-44

RolB/RolC glucosidase family; This family of proteins includes RolB and RolC. RolC releases cytokinins from glucoside conjugates. Whereas RolB hydrolyses indole glucosides.


:

Pssm-ID: 366884  Cd Length: 184  Bit Score: 156.83  E-value: 4.69e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220   1 MVDKADELDRRVSDAFSEREASRGRRITQISGECSAGLACKR-LADGRFPEISAGEKVAALSA--YIYVGKEILGRILES 77
Cdd:pfam02027  13 NITDREELKLRLEQARSDYRAFVERDLLFAQRSWVARFLRKPcLDGPRLPGIFDGDTILLDDSplYVYCSREILRQCAES 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220  78 EPWARARVSGLVAIDLAPFCMDFSEAQLLQTLFLLS-GKRCASSDLSHFVAISISKTARSRTLQmppyekGTTKRVTGFT 156
Cdd:pfam02027  93 RPLSSSSPSGLVATTLPPYREDITREQMRQLLNLVSvGYYQGPHDLSHFVAILPSKSFRRKGAF------HTSGEVYGFF 166

                         170
                  ....*....|....*...
gi 2222769220 157 L-TLEEPVPFDMVAYGRN 173
Cdd:pfam02027 167 ArSLGDAFPYDIVAVGRA 184
 
Name Accession Description Interval E-value
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 224-707 7.14e-106

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 330.61  E-value: 7.14e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 224 ISGLVVASELLHAAvDDVTIYEASDRVGGKLWSHAFKDapsVVAEMGAMRFPPAASCLFFFLERYGLSSMRPFPNPGTVD 303
Cdd:pfam01593   1 LAGLAAARELLRAG-HDVTVLEARDRVGGRIRTVRDDG---FLIELGAMWFHGAQPPLLALLKELGLEDRLVLPDPAPFY 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 304 TNLVYQGLRYmwkagqqpPKLFHRVYSGWRAFLKDGFhegdivlasPVAITQALKSGDIRRAHDSWqtwlNRFGRESFSS 383
Cdd:pfam01593  77 TVLFAGGRRY--------PGDFRRVPAGWEGLLEFGR---------LLSIPEKLRLGLAALASDAL----DEFDLDDFSL 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 384 AIERIFLGTHPPGG-ETWSFPHDWDLFKLMGIGSGGFG---PVFESGFIEILRLVINGYEENQRMCSEGISELPRRIATQ 459
Cdd:pfam01593 136 AESLLFLGRRGPGDvEVWDRLIDPELFAALPFASGAFAgdpSELSAGLALPLLWALLGEGGSLLLPRGGLGALPDALAAQ 215

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 460 VVnGVSVSQRIRhvqVRAIEKEKTKIKIRLKSGISELYDKVVVTSGLANIQlRHCLTCDTTifrAPVNQAVDNSHMTGSS 539
Cdd:pfam01593 216 LL-GGDVRLNTR---VRSIDREGDGVTVTLTDGEVIEADAVIVTVPLGVLK-RILFTPPLP---PEKARAIRNLGYGPVN 287

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 540 KLFLLTERKFWLDHIL--PSCVLMDGIAKAVYCLDYEPQDPNGKGLVLISYTWEDDSHKLLAVPDKKERFCLLRDAISRS 617
Cdd:pfam01593 288 KVHLEFDRKFWPDLGLlgLLSELLTGLGTAFSWLTFPNRAPPGKGLLLLVYVGPGDRARELEGLSDEELLQAVLRDLRKL 367

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 618 FPEfaqhlvpaCADYDQNVVQHDWLTDENAGGAFKLNRRGedfySEELFFQALDMTNDTGVYLAGCSCS--FTGGwVEGA 695
Cdd:pfam01593 368 FGE--------EAPEPLRVLVSDWHTDPWPRGSYSLPQYG----PGHDDYRPLARTPDPGLFFAGEHTStgYPGT-VEGA 434

                         490
                  ....*....|..
gi 2222769220 696 IQTACNAVCAII 707
Cdd:pfam01593 435 IESGRRAARAVL 446
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
213-712 7.22e-68

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 230.19  E-value: 7.22e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 213 PKPKVAIIGAGISGLVVASELLHAAVDdVTIYEASDRVGGKLWSHAFkDAPSVVAEMGAMRFPPAASCLFFFLERYGLsS 292
Cdd:COG1231     6 RGKDVVIVGAGLAGLAAARELRKAGLD-VTVLEARDRVGGRVWTLRF-GDDGLYAELGAMRIPPSHTNLLALARELGL-P 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 293 MRPFPNpGTVDTNLVYQGLRYMWKAGQqppKLFHRVYSGWRAFLKdgfhegdivlaspvaitqalksgDIRRAHDSWQTW 372
Cdd:COG1231    83 LEPFPN-ENGNALLYLGGKRVRAGEIA---ADLRGVAELLAKLLR-----------------------ALAAALDPWAHP 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 373 LNRFGRESFSSAIERiflgthppggeTWSFPHDWDLFKLMGIGSGGfGPVFESGFIEILRLV-INGYEENQRMCSEGISE 451
Cdd:COG1231   136 AAELDRESLAEWLRR-----------NGASPSARRLLGLLGAGEYG-ADPDELSLLDLLRYAaSAGGGAQQFRIVGGMDQ 203

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 452 LPRRIATQVVNGVSVSQRirhvqVRAIEKEKTKIKIRLKSGISELYDKVVVT---SGLANIQLrhcltcdTTIFRAPVNQ 528
Cdd:COG1231   204 LPRALAAELGDRIRLGAP-----VTRIRQDGDGVTVTTDDGGTVRADAVIVTvppSVLRRIEF-------DPPLPAAKRA 271

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 529 AVDNSHMTGSSKLFLLTERKFWL-DHILPSCVLMDGIAKAVYCLDYEPQDPNGkglVLISYTWEDDSHKLLAVPDkKERF 607
Cdd:COG1231   272 AIQRLPYGAAIKVFLQFDRPFWEeDGLYGGISLTDLPIRQTWYPSNGPDGGAG---VLLGYVGGDDARALAALSP-EERV 347

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 608 CLLRDAISRSFPEFAQHLVpacadydqNVVQHDWLTDENAGGAFKLNRRGEDFYseelFFQALdMTNDTGVYLAGCSCSF 687
Cdd:COG1231   348 AAALEQLARIFGVYAAEPV--------DYVSTDWGRDPWSRGAYAAAPPGQLTA----AGPAL-AEPDGRIHFAGEHTSD 414

                         490       500
                  ....*....|....*....|....*.
gi 2222769220 688 TG-GWVEGAIQTACNAVCAIIHNCGG 712
Cdd:COG1231   415 EWpGWVEGALESGERAAAEILARLGG 440
RolB_RolC pfam02027
RolB/RolC glucosidase family; This family of proteins includes RolB and RolC. RolC releases ...
 1-173 4.69e-44

RolB/RolC glucosidase family; This family of proteins includes RolB and RolC. RolC releases cytokinins from glucoside conjugates. Whereas RolB hydrolyses indole glucosides.


Pssm-ID: 366884  Cd Length: 184  Bit Score: 156.83  E-value: 4.69e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220   1 MVDKADELDRRVSDAFSEREASRGRRITQISGECSAGLACKR-LADGRFPEISAGEKVAALSA--YIYVGKEILGRILES 77
Cdd:pfam02027  13 NITDREELKLRLEQARSDYRAFVERDLLFAQRSWVARFLRKPcLDGPRLPGIFDGDTILLDDSplYVYCSREILRQCAES 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220  78 EPWARARVSGLVAIDLAPFCMDFSEAQLLQTLFLLS-GKRCASSDLSHFVAISISKTARSRTLQmppyekGTTKRVTGFT 156
Cdd:pfam02027  93 RPLSSSSPSGLVATTLPPYREDITREQMRQLLNLVSvGYYQGPHDLSHFVAILPSKSFRRKGAF------HTSGEVYGFF 166

                         170
                  ....*....|....*...
gi 2222769220 157 L-TLEEPVPFDMVAYGRN 173
Cdd:pfam02027 167 ArSLGDAFPYDIVAVGRA 184
PLN02676 PLN02676
polyamine oxidase
 213-271 2.28e-08

polyamine oxidase


Pssm-ID: 215362 [Multi-domain]  Cd Length: 487  Bit Score: 57.03  E-value: 2.28e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2222769220 213 PKPKVAIIGAGISGLVVASELLHAAVDDVTIYEASDRVGGKLWSHAFKDapsVVAEMGA 271
Cdd:PLN02676   25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG---VSVELGA 80
proto_IX_ox TIGR00562
protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a ...
 213-290 6.10e-06

protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 213540 [Multi-domain]  Cd Length: 462  Bit Score: 49.45  E-value: 6.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 213 PKPKVAIIGAGISGLVVASEL--LHAAVD-DVTIYEASDRVGGKLWShafKDAPSVVAEMGAMRFPPAASCLFFFLERYG 289
Cdd:TIGR00562   1 GKKHVVIIGGGISGLCAAYYLekEIPELPvELTLVEASDRVGGKIQT---VKEDGYLIERGPDSFLERKKSAPDLVKDLG 77


                  .
gi 2222769220 290 L 290
Cdd:TIGR00562  78 L 78
 
Name Accession Description Interval E-value
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 224-707 7.14e-106

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 330.61  E-value: 7.14e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 224 ISGLVVASELLHAAvDDVTIYEASDRVGGKLWSHAFKDapsVVAEMGAMRFPPAASCLFFFLERYGLSSMRPFPNPGTVD 303
Cdd:pfam01593   1 LAGLAAARELLRAG-HDVTVLEARDRVGGRIRTVRDDG---FLIELGAMWFHGAQPPLLALLKELGLEDRLVLPDPAPFY 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 304 TNLVYQGLRYmwkagqqpPKLFHRVYSGWRAFLKDGFhegdivlasPVAITQALKSGDIRRAHDSWqtwlNRFGRESFSS 383
Cdd:pfam01593  77 TVLFAGGRRY--------PGDFRRVPAGWEGLLEFGR---------LLSIPEKLRLGLAALASDAL----DEFDLDDFSL 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 384 AIERIFLGTHPPGG-ETWSFPHDWDLFKLMGIGSGGFG---PVFESGFIEILRLVINGYEENQRMCSEGISELPRRIATQ 459
Cdd:pfam01593 136 AESLLFLGRRGPGDvEVWDRLIDPELFAALPFASGAFAgdpSELSAGLALPLLWALLGEGGSLLLPRGGLGALPDALAAQ 215

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 460 VVnGVSVSQRIRhvqVRAIEKEKTKIKIRLKSGISELYDKVVVTSGLANIQlRHCLTCDTTifrAPVNQAVDNSHMTGSS 539
Cdd:pfam01593 216 LL-GGDVRLNTR---VRSIDREGDGVTVTLTDGEVIEADAVIVTVPLGVLK-RILFTPPLP---PEKARAIRNLGYGPVN 287

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 540 KLFLLTERKFWLDHIL--PSCVLMDGIAKAVYCLDYEPQDPNGKGLVLISYTWEDDSHKLLAVPDKKERFCLLRDAISRS 617
Cdd:pfam01593 288 KVHLEFDRKFWPDLGLlgLLSELLTGLGTAFSWLTFPNRAPPGKGLLLLVYVGPGDRARELEGLSDEELLQAVLRDLRKL 367

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 618 FPEfaqhlvpaCADYDQNVVQHDWLTDENAGGAFKLNRRGedfySEELFFQALDMTNDTGVYLAGCSCS--FTGGwVEGA 695
Cdd:pfam01593 368 FGE--------EAPEPLRVLVSDWHTDPWPRGSYSLPQYG----PGHDDYRPLARTPDPGLFFAGEHTStgYPGT-VEGA 434

                         490
                  ....*....|..
gi 2222769220 696 IQTACNAVCAII 707
Cdd:pfam01593 435 IESGRRAARAVL 446
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
213-712 7.22e-68

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 230.19  E-value: 7.22e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 213 PKPKVAIIGAGISGLVVASELLHAAVDdVTIYEASDRVGGKLWSHAFkDAPSVVAEMGAMRFPPAASCLFFFLERYGLsS 292
Cdd:COG1231     6 RGKDVVIVGAGLAGLAAARELRKAGLD-VTVLEARDRVGGRVWTLRF-GDDGLYAELGAMRIPPSHTNLLALARELGL-P 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 293 MRPFPNpGTVDTNLVYQGLRYMWKAGQqppKLFHRVYSGWRAFLKdgfhegdivlaspvaitqalksgDIRRAHDSWQTW 372
Cdd:COG1231    83 LEPFPN-ENGNALLYLGGKRVRAGEIA---ADLRGVAELLAKLLR-----------------------ALAAALDPWAHP 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 373 LNRFGRESFSSAIERiflgthppggeTWSFPHDWDLFKLMGIGSGGfGPVFESGFIEILRLV-INGYEENQRMCSEGISE 451
Cdd:COG1231   136 AAELDRESLAEWLRR-----------NGASPSARRLLGLLGAGEYG-ADPDELSLLDLLRYAaSAGGGAQQFRIVGGMDQ 203

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 452 LPRRIATQVVNGVSVSQRirhvqVRAIEKEKTKIKIRLKSGISELYDKVVVT---SGLANIQLrhcltcdTTIFRAPVNQ 528
Cdd:COG1231   204 LPRALAAELGDRIRLGAP-----VTRIRQDGDGVTVTTDDGGTVRADAVIVTvppSVLRRIEF-------DPPLPAAKRA 271

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 529 AVDNSHMTGSSKLFLLTERKFWL-DHILPSCVLMDGIAKAVYCLDYEPQDPNGkglVLISYTWEDDSHKLLAVPDkKERF 607
Cdd:COG1231   272 AIQRLPYGAAIKVFLQFDRPFWEeDGLYGGISLTDLPIRQTWYPSNGPDGGAG---VLLGYVGGDDARALAALSP-EERV 347

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 608 CLLRDAISRSFPEFAQHLVpacadydqNVVQHDWLTDENAGGAFKLNRRGEDFYseelFFQALdMTNDTGVYLAGCSCSF 687
Cdd:COG1231   348 AAALEQLARIFGVYAAEPV--------DYVSTDWGRDPWSRGAYAAAPPGQLTA----AGPAL-AEPDGRIHFAGEHTSD 414

                         490       500
                  ....*....|....*....|....*.
gi 2222769220 688 TG-GWVEGAIQTACNAVCAIIHNCGG 712
Cdd:COG1231   415 EWpGWVEGALESGERAAAEILARLGG 440
RolB_RolC pfam02027
RolB/RolC glucosidase family; This family of proteins includes RolB and RolC. RolC releases ...
 1-173 4.69e-44

RolB/RolC glucosidase family; This family of proteins includes RolB and RolC. RolC releases cytokinins from glucoside conjugates. Whereas RolB hydrolyses indole glucosides.


Pssm-ID: 366884  Cd Length: 184  Bit Score: 156.83  E-value: 4.69e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220   1 MVDKADELDRRVSDAFSEREASRGRRITQISGECSAGLACKR-LADGRFPEISAGEKVAALSA--YIYVGKEILGRILES 77
Cdd:pfam02027  13 NITDREELKLRLEQARSDYRAFVERDLLFAQRSWVARFLRKPcLDGPRLPGIFDGDTILLDDSplYVYCSREILRQCAES 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220  78 EPWARARVSGLVAIDLAPFCMDFSEAQLLQTLFLLS-GKRCASSDLSHFVAISISKTARSRTLQmppyekGTTKRVTGFT 156
Cdd:pfam02027  93 RPLSSSSPSGLVATTLPPYREDITREQMRQLLNLVSvGYYQGPHDLSHFVAILPSKSFRRKGAF------HTSGEVYGFF 166

                         170
                  ....*....|....*...
gi 2222769220 157 L-TLEEPVPFDMVAYGRN 173
Cdd:pfam02027 167 ArSLGDAFPYDIVAVGRA 184
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 214-503 5.99e-15

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 77.95  E-value: 5.99e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 214 KPKVAIIGAGISGLVVASELLHAAVdDVTIYEASDRVGGKLWSHAFKDapsVVAEMGAMRF----PPAASclffFLERYG 289
Cdd:COG1232     1 MKRVAVIGGGIAGLTAAYRLAKAGH-EVTVLEASDRVGGLIRTVEVDG---FRIDRGPHSFltrdPEVLE----LLRELG 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 290 LSSmrpfpnpgtvdtNLVY--QGLRYMWKAGQqppklFHRVYSGWRAFLKDGfhegdivLASPVAITQALKSGDIRR--- 364
Cdd:COG1232    73 LGD------------ELVWpnTRKSYIYYGGK-----LHPLPQGPLALLRSP-------LLSLAGKLRALLELLAPRrpp 128

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 365 -AHDSWQTWL-NRFGRESFSSAIERIFLGTHppGGE------TWSFPHdwdlFKLMGIGSGGfgpvfesgfieILRLVIN 436
Cdd:COG1232   129 gEDESLAEFVrRRFGREVYERLVEPLLEGVY--AGDpdelsaDWAFPR----LKRLELEHGS-----------LIKGALA 191

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2222769220 437 GYEENQ---RMCS--EGISELPRRIATQVVNGvsvsqRIR-HVQVRAIEKEKTKIKIRLKSGISELYDKVVVT 503
Cdd:COG1232   192 LRKGAKageVFGYlrGGLGTLVEALAEALEAG-----EIRlGTRVTAIEREGGGWRVTTSDGETIEADAVVSA 259
PLN02676 PLN02676
polyamine oxidase
 213-271 2.28e-08

polyamine oxidase


Pssm-ID: 215362 [Multi-domain]  Cd Length: 487  Bit Score: 57.03  E-value: 2.28e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2222769220 213 PKPKVAIIGAGISGLVVASELLHAAVDDVTIYEASDRVGGKLWSHAFKDapsVVAEMGA 271
Cdd:PLN02676   25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG---VSVELGA 80
Ppro0129 COG2907
Predicted flavin-containing amine oxidase [General function prediction only];
213-258 2.63e-08

Predicted flavin-containing amine oxidase [General function prediction only];


Pssm-ID: 442151 [Multi-domain]  Cd Length: 423  Bit Score: 56.66  E-value: 2.63e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2222769220 213 PKPKVAIIGAGISGLvVASELLHAAvDDVTIYEASDRVGGklwsHA 258
Cdd:COG2907     2 ARMRIAVIGSGISGL-TAAWLLSRR-HDVTLFEANDRLGG----HT 41
PRK11883 PRK11883
protoporphyrinogen oxidase; Reviewed
 215-271 3.78e-08

protoporphyrinogen oxidase; Reviewed


Pssm-ID: 237009 [Multi-domain]  Cd Length: 451  Bit Score: 56.40  E-value: 3.78e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2222769220 215 PKVAIIGAGISGLVVASELLHAAVD-DVTIYEASDRVGGKLWSHAFKDAPsvvAEMGA 271
Cdd:PRK11883    1 KKVAIIGGGITGLSAAYRLHKKGPDaDITLLEASDRLGGKIQTVRKDGFP---IELGP 55
PRK07233 PRK07233
hypothetical protein; Provisional
 216-261 4.36e-08

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 56.05  E-value: 4.36e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2222769220 216 KVAIIGAGISGLVVASELLHAAVdDVTIYEASDRVGGKLWSHAFKD 261
Cdd:PRK07233    1 KIAIVGGGIAGLAAAYRLAKRGH-EVTVFEADDQLGGLAASFEFGG 45
PLN02487 PLN02487
zeta-carotene desaturase
 213-289 3.03e-07

zeta-carotene desaturase


Pssm-ID: 215268 [Multi-domain]  Cd Length: 569  Bit Score: 53.65  E-value: 3.03e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2222769220 213 PKPKVAIIGAGISGLVVASELLHAAvDDVTIYEASDRVGGKLWShaFKDAPSVVAEMGAMRFPPAASCLFFFLERYG 289
Cdd:PLN02487   74 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRPFIGGKVGS--FVDKNGNHIEMGLHVFFGCYNNLFRLMKKVG 147
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 213-378 4.51e-07

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 52.93  E-value: 4.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 213 PKPKVAIIGAGISGLVVASELLHAAVdDVTIYEASDRVGGKlwSHAFKDAPS-VVAEMGAMRFPPAASCLFFFLERYGLS 291
Cdd:COG3349     2 MPPRVVVVGGGLAGLAAAVELAEAGF-RVTLLEARPRLGGR--ARSFPDPDTgLPIDNGQHVLLGCYRNTLDLLRRIGAA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 292 SMRPFPNPGTVDTnlvYQGLRYMWKAGQQPPKLfhrvySGWRAFLkdGFHegDIVLASPVAITQALKSGDIRRAHD---- 367
Cdd:COG3349    79 DNLVGPEPLQFPL---PGGRRWTLRAPRLPAPL-----HLLRALL--RAP--GLSLADRLALLRLLTACRERRWRElddi 146

                         170
                  ....*....|.
gi 2222769220 368 SWQTWLNRFGR 378
Cdd:COG3349   147 SVADWLRRHGQ 157
COG3380 COG3380
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
213-254 5.00e-07

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];


Pssm-ID: 442607 [Multi-domain]  Cd Length: 331  Bit Score: 52.19  E-value: 5.00e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2222769220 213 PKPKVAIIGAGISGLVVASELLHAAVdDVTIYEASDRVGGKL 254
Cdd:COG3380     2 SMPDIAIIGAGIAGLAAARALQDAGH-EVTVFEKSRGVGGRM 42
PLN02576 PLN02576
protoporphyrinogen oxidase
 217-256 5.38e-07

protoporphyrinogen oxidase


Pssm-ID: 215314 [Multi-domain]  Cd Length: 496  Bit Score: 52.71  E-value: 5.38e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2222769220 217 VAIIGAGISGLVVASELLHAAVDDVTIYEASDRVGGKLWS 256
Cdd:PLN02576   15 VAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 209-252 2.78e-06

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 50.25  E-value: 2.78e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2222769220 209 PEDVPKPKVAIIGAGISGLVVASELLHAAVdDVTIYEASDRVGG 252
Cdd:COG2072     1 TAATEHVDVVVIGAGQAGLAAAYHLRRAGI-DFVVLEKADDVGG 43
PRK07208 PRK07208
hypothetical protein; Provisional
 213-252 3.64e-06

hypothetical protein; Provisional


Pssm-ID: 235967 [Multi-domain]  Cd Length: 479  Bit Score: 50.27  E-value: 3.64e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2222769220 213 PKPKVAIIGAGISGLVVASELLHAAVdDVTIYEASDRVGG 252
Cdd:PRK07208    3 NKKSVVIIGAGPAGLTAAYELLKRGY-PVTVLEADPVVGG 41
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 197-254 3.96e-06

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 49.75  E-value: 3.96e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2222769220 197 DQCSDSGRIGFFPEDVP-KPKVAIIGAGISGLVVASELLHAAVdDVTIYEASDRVGGKL 254
Cdd:COG0493   103 DKAFEEGWVKPPPPAPRtGKKVAVVGSGPAGLAAAYQLARAGH-EVTVFEALDKPGGLL 160
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 214-254 5.92e-06

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 49.46  E-value: 5.92e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2222769220 214 KPKVAIIGAGISGLVVASELLHAAVdDVTIYEASDRVGGKL 254
Cdd:COG1233     3 MYDVVVIGAGIGGLAAAALLARAGY-RVTVLEKNDTPGGRA 42
proto_IX_ox TIGR00562
protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a ...
 213-290 6.10e-06

protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 213540 [Multi-domain]  Cd Length: 462  Bit Score: 49.45  E-value: 6.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 213 PKPKVAIIGAGISGLVVASEL--LHAAVD-DVTIYEASDRVGGKLWShafKDAPSVVAEMGAMRFPPAASCLFFFLERYG 289
Cdd:TIGR00562   1 GKKHVVIIGGGISGLCAAYYLekEIPELPvELTLVEASDRVGGKIQT---VKEDGYLIERGPDSFLERKKSAPDLVKDLG 77


                  .
gi 2222769220 290 L 290
Cdd:TIGR00562  78 L 78
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
 216-252 8.72e-06

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 49.02  E-value: 8.72e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2222769220 216 KVAIIGAGISGLVVASELLHAAVdDVTIYEASDRVGG 252
Cdd:PRK11749  142 KVAVIGAGPAGLTAAHRLARKGY-DVTIFEARDKAGG 177
gltD PRK12810
glutamate synthase subunit beta; Reviewed
 216-254 2.39e-05

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 47.47  E-value: 2.39e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2222769220 216 KVAIIGAGISGLVVASELLHAAVdDVTIYEASDRVGGKL 254
Cdd:PRK12810  145 KVAVVGSGPAGLAAADQLARAGH-KVTVFERADRIGGLL 182
PLN02568 PLN02568
polyamine oxidase
 214-271 3.80e-05

polyamine oxidase


Pssm-ID: 215308 [Multi-domain]  Cd Length: 539  Bit Score: 47.13  E-value: 3.80e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2222769220 214 KPKVAIIGAGISGLVVASELLHAAVD----DVTIYEASDRVGGKLWSHAFKdapSVVAEMGA 271
Cdd:PLN02568    5 KPRIVIIGAGMAGLTAANKLYTSSAAndmfELTVVEGGDRIGGRINTSEFG---GERIEMGA 63
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
219-261 5.12e-05

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 41.75  E-value: 5.12e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2222769220 219 IIGAGISGLVVASELLHAAVdDVTIYEASDRVGGKLWSHAFKD 261
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGF-RVLVLEKRDRLGGNAYSYRVPG 42
PRK12814 PRK12814
putative NADPH-dependent glutamate synthase small subunit; Provisional
 206-254 2.59e-04

putative NADPH-dependent glutamate synthase small subunit; Provisional


Pssm-ID: 139246 [Multi-domain]  Cd Length: 652  Bit Score: 44.33  E-value: 2.59e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2222769220 206 GFFPEDVPKP--KVAIIGAGISGLVVASELLhAAVDDVTIYEASDRVGGKL 254
Cdd:PRK12814  183 RYIPERAPKSgkKVAIIGAGPAGLTAAYYLL-RKGHDVTIFDANEQAGGMM 232
PLN02268 PLN02268
probable polyamine oxidase
 215-254 2.67e-04

probable polyamine oxidase


Pssm-ID: 177909 [Multi-domain]  Cd Length: 435  Bit Score: 43.91  E-value: 2.67e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2222769220 215 PKVAIIGAGISGLvVASELLHAAVDDVTIYEASDRVGGKL 254
Cdd:PLN02268    1 PSVIVIGGGIAGI-AAARALHDASFKVTLLESRDRIGGRV 39
YdhS COG4529
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
213-251 4.26e-04

Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];


Pssm-ID: 443597 [Multi-domain]  Cd Length: 466  Bit Score: 43.40  E-value: 4.26e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2222769220 213 PKPKVAIIGAGISGLVVASELLHAAVD--DVTIYEASDRVG 251
Cdd:COG4529     4 ARKRIAIIGGGASGTALAIHLLRRAPEplRITLFEPRPELG 44
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
217-251 8.52e-04

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 42.44  E-value: 8.52e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2222769220 217 VAIIGAGISGLVVASELLHAAVDDVTIYEASDRVG 251
Cdd:COG0579     7 VVIIGAGIVGLALARELSRYEDLKVLVLEKEDDVA 41
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 213-259 1.18e-03

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 41.85  E-value: 1.18e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2222769220 213 PKPKVAIIGAGISGLVVASELLHAAVdDVTIYEASDRVGGKLWSHAF 259
Cdd:COG0654     2 MRTDVLIVGGGPAGLALALALARAGI-RVTVVERAPPPRPDGRGIAL 47
PRK12831 PRK12831
putative oxidoreductase; Provisional
 209-254 1.29e-03

putative oxidoreductase; Provisional


Pssm-ID: 183780 [Multi-domain]  Cd Length: 464  Bit Score: 41.93  E-value: 1.29e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2222769220 209 PEDVPKPKVAIIGAGISGLVVASELlhAAVD-DVTIYEASDRVGGKL 254
Cdd:PRK12831  135 TEEKKGKKVAVIGSGPAGLTCAGDL--AKMGyDVTIFEALHEPGGVL 179
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 207-252 1.88e-03

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 41.32  E-value: 1.88e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2222769220 207 FFPEDVPKpKVAIIGAGISGLVVASeLLHAAVDDVTIYEASDRVGG 252
Cdd:PRK06292  163 FELDKLPK-SLAVIGGGVIGLELGQ-ALSRLGVKVTVFERGDRILP 206
PRK12778 PRK12778
bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate ...
 208-254 3.44e-03

bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase;


Pssm-ID: 237200 [Multi-domain]  Cd Length: 752  Bit Score: 40.88  E-value: 3.44e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2222769220 208 FPEDVPK--PKVAIIGAGISGLVVASELLHAAVdDVTIYEASDRVGGKL 254
Cdd:PRK12778  423 VPEVAEKngKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEALHEIGGVL 470
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 216-254 4.31e-03

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 36.80  E-value: 4.31e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2222769220 216 KVAIIGAGISGLVVASElLHAAVDDVTIYEASDRVGGKL 254
Cdd:pfam00070   1 RVVVVGGGYIGLELAGA-LARLGSKVTVVERRDRLLPGF 38
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 216-302 8.75e-03

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 38.92  E-value: 8.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222769220 216 KVAIIGAGISGLVVAselLHAAV--DDVTIYEASDRVG--------GKLWSHAFKDAPSVVAEMGAMrfppAASCLFFFL 285
Cdd:pfam01266   1 DVVVIGGGIVGLSTA---YELARrgLSVTLLERGDDPGsgasgrnaGLIHPGLRYLEPSELARLALE----ALDLWEELE 73

                          90
                  ....*....|....*..
gi 2222769220 286 ERYGLSSmrPFPNPGTV 302
Cdd:pfam01266  74 EELGIDC--GFRRCGVL 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH