NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2223346068|ref|WP_244935453|]
View 

NAD(P)/FAD-dependent oxidoreductase [Pseudomonas sessilinigenes]

Protein Classification

NAD(P)/FAD-dependent oxidoreductase( domain architecture ID 11441299)

NAD(P)/FAD-dependent oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant; similar to sulfide:quinone oxidoreductase which catalyzes the oxidation of hydrogen sulfide using quinone as the electron acceptor

EC:  1.6.-.-
Gene Ontology:  GO:0003954|GO:0006116
PubMed:  15590775|28181562

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
30-401 6.84e-157

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


:

Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 448.43  E-value: 6.84e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  30 GADVDITIIDRRNYHLFQPLLYQVAGASLSTSEIAWPIRHLFRnRQNVQTLMAEVQGVDADARQVILDNGSTVGYDTLVL 109
Cdd:COG1252    25 GGDAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLR-RAGVRFIQGEVTGIDPEARTVTLADGRTLSYDYLVI 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 110 ATGATHAYFGRDEWEPHAPGLKTLEDATTIRGRILGAFEQAERStnpaertALQTFVIIGGGPTGVELAGTIAELAKDTL 189
Cdd:COG1252   104 ATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERAERR-------RLLTIVVVGGGPTGVELAGELAELLRKLL 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 190 ArdFRSIDPRTTRVVLIEAGTRLLPVFPEKLSEYTRRALEKLGVEVALGAPVTDCSSEGVIVA-GKQLAARTIVWAAGVQ 268
Cdd:COG1252   177 R--YPGIDPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHTGTRVTEVDADGVTLEdGEEIPADTVIWAAGVK 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 269 ASPAARWLNAESDRAGRVLVTPDLSVPRRPEIFVIGDTAASAMPNGKYVPGIAPAAKQQGKYVANLVKRRLKGKSVdEPF 348
Cdd:COG1252   255 APPLLADLGLPTDRRGRVLVDPTLQVPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQAKVLAKNIAALLRGKPL-KPF 333

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2223346068 349 KYKHQGNLATIGRSLAVIDMGRIRLRGAIAWWIWKLAHIYFLIGVRNRLSVAL 401
Cdd:COG1252   334 RYRDKGCLASLGRGAAVADVGGLKLSGFLAWLLKRAIHLYFLPGFRGRLRVLL 386
 
Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
30-401 6.84e-157

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 448.43  E-value: 6.84e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  30 GADVDITIIDRRNYHLFQPLLYQVAGASLSTSEIAWPIRHLFRnRQNVQTLMAEVQGVDADARQVILDNGSTVGYDTLVL 109
Cdd:COG1252    25 GGDAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLR-RAGVRFIQGEVTGIDPEARTVTLADGRTLSYDYLVI 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 110 ATGATHAYFGRDEWEPHAPGLKTLEDATTIRGRILGAFEQAERStnpaertALQTFVIIGGGPTGVELAGTIAELAKDTL 189
Cdd:COG1252   104 ATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERAERR-------RLLTIVVVGGGPTGVELAGELAELLRKLL 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 190 ArdFRSIDPRTTRVVLIEAGTRLLPVFPEKLSEYTRRALEKLGVEVALGAPVTDCSSEGVIVA-GKQLAARTIVWAAGVQ 268
Cdd:COG1252   177 R--YPGIDPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHTGTRVTEVDADGVTLEdGEEIPADTVIWAAGVK 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 269 ASPAARWLNAESDRAGRVLVTPDLSVPRRPEIFVIGDTAASAMPNGKYVPGIAPAAKQQGKYVANLVKRRLKGKSVdEPF 348
Cdd:COG1252   255 APPLLADLGLPTDRRGRVLVDPTLQVPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQAKVLAKNIAALLRGKPL-KPF 333

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2223346068 349 KYKHQGNLATIGRSLAVIDMGRIRLRGAIAWWIWKLAHIYFLIGVRNRLSVAL 401
Cdd:COG1252   334 RYRDKGCLASLGRGAAVADVGGLKLSGFLAWLLKRAIHLYFLPGFRGRLRVLL 386
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
 34-404 1.66e-70

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 228.88  E-value: 1.66e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  34 DITIIDRRNYHLFQPLLYQVAGASLSTSEIAWPIRHLFRNRQNvQTLMAEVQGVDADARQVILDNGS----------TVG 103
Cdd:PTZ00318   35 NITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPN-RYLRAVVYDVDFEEKRVKCGVVSksnnanvntfSVP 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 104 YDTLVLATGATHAYFGRDEWEPHAPGLKTLEDATTIRGRILGAFEQAER-STNPAERTALQTFVIIGGGPTGVELAGTIA 182
Cdd:PTZ00318  114 YDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLpTTSVEERKRLLHFVVVGGGPTGVEFAAELA 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 183 ELAKDTLARDFRSIDPRTtRVVLIEAGTRLLPVFPEKLSEYTRRALEKLGVEVALGAPVTDCSSEGVIV-AGKQLAARTI 261
Cdd:PTZ00318  194 DFFRDDVRNLNPELVEEC-KVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLkDGEVIPTGLV 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 262 VWAAGVQASPAARWLNAESDRAGRVLVTPDLSVPRRPEIFVIGDTAASampNGKYVPGIAPAAKQQGKYVANLVKRRLKG 341
Cdd:PTZ00318  273 VWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAAN---EERPLPTLAQVASQQGVYLAKEFNNELKG 349

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2223346068 342 KSVDEPFKYKHQGNLATIGRSLAVIDMGRIRLRGAIAWWIWKLAHIYFLIGVRNRLSVALSWV 404
Cdd:PTZ00318  350 KPMSKPFVYRSLGSLAYLGNYSAIVQLGAFDLSGFKALLFWRSAYLTILGSWRSKLYVLVNWA 412
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 31-328 5.21e-37

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 137.06  E-value: 5.21e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  31 ADVDITII-DRRNYHLFQPLLYQVAGASLSTSEIA--------WPIRHLFRNRQNVQTLMA-EVQGVDADARQVIL---- 96
Cdd:pfam07992  22 LGGKVTLIeDEGTCPYGGCVLSKALLGAAEAPEIAslwadlykRKEEVVKKLNNGIEVLLGtEVVSIDPGAKKVVLeelv 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  97 -DNGSTVGYDTLVLATGAThayfgrdewePHAPGLKTLEDATTIRGRILGAFEQAERSTNPaertalQTFVIIGGGPTGV 175
Cdd:pfam07992 102 dGDGETITYDRLVIATGAR----------PRLPPIPGVELNVGFLVRTLDSAEALRLKLLP------KRVVVVGGGYIGV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 176 ELAGTIAELAKDtlardfrsidprttrVVLIEAGTRLLPVFPEKLSEYTRRALEKLGVEVALGAPVTDCSSEGVIVA--- 252
Cdd:pfam07992 166 ELAAALAKLGKE---------------VTLIEALDRLLRAFDEEISAALEKALEKNGVEVRLGTSVKEIIGDGDGVEvil 230

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2223346068 253 --GKQLAARTIVWAAGVQASPA-ARWLNAESDRAGRVLVTPDLSVPrRPEIFVIGDTaasampnGKYVPGIAPAAKQQG 328
Cdd:pfam07992 231 kdGTEIDADLVVVAIGRRPNTElLEAAGLELDERGGIVVDEYLRTS-VPGIYAAGDC-------RVGGPELAQNAVAQG 301
nitri_red_nirB TIGR02374
nitrite reductase [NAD(P)H], large subunit; [Central intermediary metabolism, Nitrogen ...
 29-333 1.82e-13

nitrite reductase [NAD(P)H], large subunit; [Central intermediary metabolism, Nitrogen metabolism]


Pssm-ID: 162827 [Multi-domain]  Cd Length: 785  Bit Score: 72.55  E-value: 1.82e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  29 SGADVDITII---DRRNYHlfQPLLYQVAGASLSTSEIAWPiRHLFRNRQNVQTLMAE-VQGVDADARQVILDNGSTVGY 104
Cdd:TIGR02374  21 NRHMFEITIFgeePHPNYN--RILLSSVLQGEADLDDITLN-SKDWYEKHGITLYTGEtVIQIDTDQKQVITDAGRTLSY 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 105 DTLVLATGAThayfgrdEWEPHAPG--------LKTLEDATTIRgrilgafeqaerstNPAERTalQTFVIIGGGPTGVE 176
Cdd:TIGR02374  98 DKLILATGSY-------PFILPIPGadkkgvyvFRTIEDLDAIM--------------AMAQRF--KKAAVIGGGLLGLE 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 177 LAGTIAELAKDTLARDFRsidPRTTRVVLIEAGTRLLpvfpeklseytRRALEKLGVEVALGAPVTDCSSEGVIVA---- 252
Cdd:TIGR02374 155 AAVGLQNLGMDVSVIHHA---PGLMAKQLDQTAGRLL-----------QRELEQKGLTFLLEKDTVEIVGATKADRirfk 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 253 -GKQLAARTIVWAAGVQasPAARWLNAESDRAGRVLVTPDLSVPRRPEIFVIGDTAASampNGKYVPGIAPAAKqQGKYV 331
Cdd:TIGR02374 221 dGSSLEADLIVMAAGIR--PNDELAVSAGIKVNRGIIVNDSMQTSDPDIYAVGECAEH---NGRVYGLVAPLYE-QAKVL 294


                  ..
gi 2223346068 332 AN 333
Cdd:TIGR02374 295 AD 296
 
Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
30-401 6.84e-157

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 448.43  E-value: 6.84e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  30 GADVDITIIDRRNYHLFQPLLYQVAGASLSTSEIAWPIRHLFRnRQNVQTLMAEVQGVDADARQVILDNGSTVGYDTLVL 109
Cdd:COG1252    25 GGDAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLR-RAGVRFIQGEVTGIDPEARTVTLADGRTLSYDYLVI 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 110 ATGATHAYFGRDEWEPHAPGLKTLEDATTIRGRILGAFEQAERStnpaertALQTFVIIGGGPTGVELAGTIAELAKDTL 189
Cdd:COG1252   104 ATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERAERR-------RLLTIVVVGGGPTGVELAGELAELLRKLL 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 190 ArdFRSIDPRTTRVVLIEAGTRLLPVFPEKLSEYTRRALEKLGVEVALGAPVTDCSSEGVIVA-GKQLAARTIVWAAGVQ 268
Cdd:COG1252   177 R--YPGIDPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHTGTRVTEVDADGVTLEdGEEIPADTVIWAAGVK 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 269 ASPAARWLNAESDRAGRVLVTPDLSVPRRPEIFVIGDTAASAMPNGKYVPGIAPAAKQQGKYVANLVKRRLKGKSVdEPF 348
Cdd:COG1252   255 APPLLADLGLPTDRRGRVLVDPTLQVPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQAKVLAKNIAALLRGKPL-KPF 333

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2223346068 349 KYKHQGNLATIGRSLAVIDMGRIRLRGAIAWWIWKLAHIYFLIGVRNRLSVAL 401
Cdd:COG1252   334 RYRDKGCLASLGRGAAVADVGGLKLSGFLAWLLKRAIHLYFLPGFRGRLRVLL 386
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
 34-404 1.66e-70

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 228.88  E-value: 1.66e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  34 DITIIDRRNYHLFQPLLYQVAGASLSTSEIAWPIRHLFRNRQNvQTLMAEVQGVDADARQVILDNGS----------TVG 103
Cdd:PTZ00318   35 NITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPN-RYLRAVVYDVDFEEKRVKCGVVSksnnanvntfSVP 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 104 YDTLVLATGATHAYFGRDEWEPHAPGLKTLEDATTIRGRILGAFEQAER-STNPAERTALQTFVIIGGGPTGVELAGTIA 182
Cdd:PTZ00318  114 YDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLpTTSVEERKRLLHFVVVGGGPTGVEFAAELA 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 183 ELAKDTLARDFRSIDPRTtRVVLIEAGTRLLPVFPEKLSEYTRRALEKLGVEVALGAPVTDCSSEGVIV-AGKQLAARTI 261
Cdd:PTZ00318  194 DFFRDDVRNLNPELVEEC-KVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLkDGEVIPTGLV 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 262 VWAAGVQASPAARWLNAESDRAGRVLVTPDLSVPRRPEIFVIGDTAASampNGKYVPGIAPAAKQQGKYVANLVKRRLKG 341
Cdd:PTZ00318  273 VWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAAN---EERPLPTLAQVASQQGVYLAKEFNNELKG 349

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2223346068 342 KSVDEPFKYKHQGNLATIGRSLAVIDMGRIRLRGAIAWWIWKLAHIYFLIGVRNRLSVALSWV 404
Cdd:PTZ00318  350 KPMSKPFVYRSLGSLAYLGNYSAIVQLGAFDLSGFKALLFWRSAYLTILGSWRSKLYVLVNWA 412
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 31-328 5.21e-37

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 137.06  E-value: 5.21e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  31 ADVDITII-DRRNYHLFQPLLYQVAGASLSTSEIA--------WPIRHLFRNRQNVQTLMA-EVQGVDADARQVIL---- 96
Cdd:pfam07992  22 LGGKVTLIeDEGTCPYGGCVLSKALLGAAEAPEIAslwadlykRKEEVVKKLNNGIEVLLGtEVVSIDPGAKKVVLeelv 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  97 -DNGSTVGYDTLVLATGAThayfgrdewePHAPGLKTLEDATTIRGRILGAFEQAERSTNPaertalQTFVIIGGGPTGV 175
Cdd:pfam07992 102 dGDGETITYDRLVIATGAR----------PRLPPIPGVELNVGFLVRTLDSAEALRLKLLP------KRVVVVGGGYIGV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 176 ELAGTIAELAKDtlardfrsidprttrVVLIEAGTRLLPVFPEKLSEYTRRALEKLGVEVALGAPVTDCSSEGVIVA--- 252
Cdd:pfam07992 166 ELAAALAKLGKE---------------VTLIEALDRLLRAFDEEISAALEKALEKNGVEVRLGTSVKEIIGDGDGVEvil 230

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2223346068 253 --GKQLAARTIVWAAGVQASPA-ARWLNAESDRAGRVLVTPDLSVPrRPEIFVIGDTaasampnGKYVPGIAPAAKQQG 328
Cdd:pfam07992 231 kdGTEIDADLVVVAIGRRPNTElLEAAGLELDERGGIVVDEYLRTS-VPGIYAAGDC-------RVGGPELAQNAVAQG 301
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 30-376 4.85e-34

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 129.55  E-value: 4.85e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  30 GADVDITIIDRRNYHLFQP--LLYQVAGASLSTSEIAWPIRHLFRnRQNVQTLM-AEVQGVDADARQVILDNGSTVGYDT 106
Cdd:COG0446     3 GPDAEITVIEKGPHHSYQPcgLPYYVGGGIKDPEDLLVRTPESFE-RKGIDVRTgTEVTAIDPEAKTVTLRDGETLSYDK 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 107 LVLATGATHAYFGRDEWE-PHAPGLKTLEDATTIRGRIlgafeqaerstnpaERTALQTFVIIGGGPTGVELAgtiaela 185
Cdd:COG0446    82 LVLATGARPRPPPIPGLDlPGVFTLRTLDDADALREAL--------------KEFKGKRAVVIGGGPIGLELA------- 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 186 kDTLARdfrsidpRTTRVVLIEAGTRLLPVFPEKLSEYTRRALEKLGVEVALGAPVTDCSSEGVIVA----GKQLAARTI 261
Cdd:COG0446   141 -EALRK-------RGLKVTLVERAPRLLGVLDPEMAALLEEELREHGVELRLGETVVAIDGDDKVAVtltdGEEIPADLV 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 262 VWAAGVQasPAARWLNA---ESDRAGRVLVTPDL--SVPRrpeIFVIGDTAASAMP-NGK--YVPGIAPAAKqQGKYVA- 332
Cdd:COG0446   213 VVAPGVR--PNTELAKDaglALGERGWIKVDETLqtSDPD---VYAAGDCAEVPHPvTGKtvYIPLASAANK-QGRVAAe 286

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 2223346068 333 NLVKRrlkgksvdePFKYKHQGNLATIGRSLAVIDMGRIRLRGA 376
Cdd:COG0446   287 NILGG---------PAPFPGLGTFISKVFDLCIASTGTGRLLGA 321
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
30-333 1.87e-27

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 112.93  E-value: 1.87e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  30 GADVDITIIDRRNYHLFQ--PLLYQVAG----ASLSTSEIAWPIRHlfrnrqNVQT-LMAEVQGVDADARQVILDNGSTV 102
Cdd:COG1251    24 DPDGEITVIGAEPHPPYNrpPLSKVLAGetdeEDLLLRPADFYEEN------GIDLrLGTRVTAIDRAARTVTLADGETL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 103 GYDTLVLATGAThayfgrdEWEPHAPG--------LKTLEDATTIRGRILGAfeqaerstnpaertalQTFVIIGGGPTG 174
Cdd:COG1251    98 PYDKLVLATGSR-------PRVPPIPGadlpgvftLRTLDDADALRAALAPG----------------KRVVVIGGGLIG 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 175 VELAGTIAELAKDtlardfrsidprttrVVLIEAGTRLLP-VFPEKLSEYTRRALEKLGVEVALGAPVT----DCSSEGV 249
Cdd:COG1251   155 LEAAAALRKRGLE---------------VTVVERAPRLLPrQLDEEAGALLQRLLEALGVEVRLGTGVTeiegDDRVTGV 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 250 IVA-GKQLAARTIVWAAGVQasPAARWL-NAESDRAGRVLVTPDL--SVPRrpeIFVIGDTAASA-MPNGKYVPGIAPAA 324
Cdd:COG1251   220 RLAdGEELPADLVVVAIGVR--PNTELArAAGLAVDRGIVVDDYLrtSDPD---IYAAGDCAEHPgPVYGRRVLELVAPA 294


                  ....*....
gi 2223346068 325 KQQGKYVAN 333
Cdd:COG1251   295 YEQARVAAA 303
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 72-332 2.77e-16

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 80.52  E-value: 2.77e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  72 RNRQNVQTLMAEvQGVD--------ADARQVILDNGSTVGYDTLVLATGAThayfgrdewePHAPGLKTLEDAttirgRI 143
Cdd:COG1249    92 RLRGGVEELLKK-NGVDvirgrarfVDPHTVEVTGGETLTADHIVIATGSR----------PRVPPIPGLDEV-----RV 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 144 L---GAFEQAERstnPaertalQTFVIIGGGPTGVELAGTIAELAkdtlardfrsidprtTRVVLIEAGTRLLPVFPEKL 220
Cdd:COG1249   156 LtsdEALELEEL---P------KSLVVIGGGYIGLEFAQIFARLG---------------SEVTLVERGDRLLPGEDPEI 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 221 SEYTRRALEKLGVEVALGAPVTDC--SSEGVIV------AGKQLAARTIVWAAGVQasPAARWLNAES-----DRAGRVL 287
Cdd:COG1249   212 SEALEKALEKEGIDILTGAKVTSVekTGDGVTVtledggGEEAVEADKVLVATGRR--PNTDGLGLEAagvelDERGGIK 289

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2223346068 288 VTPDL--SVPRrpeIFVIGDTAASAMpngkyvpgIAPAAKQQGKYVA 332
Cdd:COG1249   290 VDEYLrtSVPG---IYAIGDVTGGPQ--------LAHVASAEGRVAA 325
nitri_red_nirB TIGR02374
nitrite reductase [NAD(P)H], large subunit; [Central intermediary metabolism, Nitrogen ...
 29-333 1.82e-13

nitrite reductase [NAD(P)H], large subunit; [Central intermediary metabolism, Nitrogen metabolism]


Pssm-ID: 162827 [Multi-domain]  Cd Length: 785  Bit Score: 72.55  E-value: 1.82e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  29 SGADVDITII---DRRNYHlfQPLLYQVAGASLSTSEIAWPiRHLFRNRQNVQTLMAE-VQGVDADARQVILDNGSTVGY 104
Cdd:TIGR02374  21 NRHMFEITIFgeePHPNYN--RILLSSVLQGEADLDDITLN-SKDWYEKHGITLYTGEtVIQIDTDQKQVITDAGRTLSY 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 105 DTLVLATGAThayfgrdEWEPHAPG--------LKTLEDATTIRgrilgafeqaerstNPAERTalQTFVIIGGGPTGVE 176
Cdd:TIGR02374  98 DKLILATGSY-------PFILPIPGadkkgvyvFRTIEDLDAIM--------------AMAQRF--KKAAVIGGGLLGLE 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 177 LAGTIAELAKDTLARDFRsidPRTTRVVLIEAGTRLLpvfpeklseytRRALEKLGVEVALGAPVTDCSSEGVIVA---- 252
Cdd:TIGR02374 155 AAVGLQNLGMDVSVIHHA---PGLMAKQLDQTAGRLL-----------QRELEQKGLTFLLEKDTVEIVGATKADRirfk 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 253 -GKQLAARTIVWAAGVQasPAARWLNAESDRAGRVLVTPDLSVPRRPEIFVIGDTAASampNGKYVPGIAPAAKqQGKYV 331
Cdd:TIGR02374 221 dGSSLEADLIVMAAGIR--PNDELAVSAGIKVNRGIIVNDSMQTSDPDIYAVGECAEH---NGRVYGLVAPLYE-QAKVL 294


                  ..
gi 2223346068 332 AN 333
Cdd:TIGR02374 295 AD 296
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 166-242 7.05e-11

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 57.98  E-value: 7.05e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2223346068 166 VIIGGGPTGVELAGTIAELAKDtlardfrsidprttrVVLIEAGTRLLPVFPEKLSEYTRRALEKLGVEVALGAPVT 242
Cdd:pfam00070   3 VVVGGGYIGLELAGALARLGSK---------------VTVVERRDRLLPGFDPEIAKILQEKLEKNGIEFLLNTTVE 64
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
 166-332 2.08e-08

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 55.92  E-value: 2.08e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 166 VIIGGGPTGVELAGTIAELAKDtlardfrsidprttrVVLIEAGTRLLPVFPEKLSEYTRRALEKLGVEVALGAPVTDCS 245
Cdd:PRK06416  176 VVIGGGYIGVEFASAYASLGAE---------------VTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVE 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 246 --SEGVIVA------GKQLAARTIVWAAGVQASPAARWLNA---ESDRaGRVLVTPDL--SVprrPEIFVIGDTAASAMp 312
Cdd:PRK06416  241 qtDDGVTVTledggkEETLEADYVLVAVGRRPNTENLGLEElgvKTDR-GFIEVDEQLrtNV---PNIYAIGDIVGGPM- 315

                         170       180
                  ....*....|....*....|
gi 2223346068 313 ngkyvpgIAPAAKQQGKYVA 332
Cdd:PRK06416  316 -------LAHKASAEGIIAA 328
PRK09564 PRK09564
coenzyme A disulfide reductase; Reviewed
 83-340 6.31e-07

coenzyme A disulfide reductase; Reviewed


Pssm-ID: 181958 [Multi-domain]  Cd Length: 444  Bit Score: 51.19  E-value: 6.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  83 EVQGVDADARQVI---LDNGS--TVGYDTLVLATGATHAYFGRDEWEP-HAPGLKTLEDATTIRGRIlgafeqaerstnp 156
Cdd:PRK09564   78 EVVKVDAKNKTITvknLKTGSifNDTYDKLMIATGARPIIPPIKNINLeNVYTLKSMEDGLALKELL------------- 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 157 aERTALQTFVIIGGGPTGVELAGTIAELAKDtlardfrsidprttrVVLIEAGTRLLP-VFPEKLSEYTRRALEKLGVEV 235
Cdd:PRK09564  145 -KDEEIKNIVIIGAGFIGLEAVEAAKHLGKN---------------VRIIQLEDRILPdSFDKEITDVMEEELRENGVEL 208

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 236 ALGAPVTDCSSE----GVIVAGKQLAARTIVWAAGVQasPAARWLNAES-----------DRAGRVLVtpdlsvprrPEI 300
Cdd:PRK09564  209 HLNEFVKSLIGEdkveGVVTDKGEYEADVVIVATGVK--PNTEFLEDTGlktlkngaiivDEYGETSI---------ENI 277

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 2223346068 301 FVIGDTAA---SAMPNGKYVPgIAPAAKQQGKYVA-NLVKRRLK 340
Cdd:PRK09564  278 YAAGDCATiynIVSNKNVYVP-LATTANKLGRMVGeNLAGRHVS 320
PRK14989 PRK14989
nitrite reductase subunit NirD; Provisional
 67-351 1.41e-06

nitrite reductase subunit NirD; Provisional


Pssm-ID: 184951 [Multi-domain]  Cd Length: 847  Bit Score: 50.50  E-value: 1.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  67 IRHLFRNRQNVQTLMAE-VQGVDADARQVILDNGSTVGYDTLVLATGAThayfgrdEWEPHAPG--------LKTLEDAT 137
Cdd:PRK14989   64 VREGFYEKHGIKVLVGErAITINRQEKVIHSSAGRTVFYDKLIMATGSY-------PWIPPIKGsetqdcfvYRTIEDLN 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 138 TIRgrilgafEQAERSTNPAertalqtfvIIGGGPTGVELAGTIAELAKDTLARDFRsidPRTTRVVLIEAGTRLLpvfp 217
Cdd:PRK14989  137 AIE-------ACARRSKRGA---------VVGGGLLGLEAAGALKNLGVETHVIEFA---PMLMAEQLDQMGGEQL---- 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 218 eklseytRRALEKLGVEVALGAPVTDCSSEGV-------IVAGKQLAARTIVWAAGVQASPA-ARWLNAESDRAGRVLVT 289
Cdd:PRK14989  194 -------RRKIESMGVRVHTSKNTLEIVQEGVearktmrFADGSELEVDFIVFSTGIRPQDKlATQCGLAVAPRGGIVIN 266

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2223346068 290 pDLSVPRRPEIFVIGDTAASampNGKYVPGIAPAAKQQGKYVANLVKRRLKGKSVDEPFKYK 351
Cdd:PRK14989  267 -DSCQTSDPDIYAIGECASW---NNRVFGLVAPGYKMAQVAVDHLLGSENAFEGADLSAKLK 324
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
76-305 1.99e-06

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 49.35  E-value: 1.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  76 NVQTLMAEVQGVDADAR--QVILDNGSTVGYDTLVLATGATHAYFGrdewephAPGLKTLEDattiRGRILGAFEQAERS 153
Cdd:COG0492    71 GAEILLEEVTSVDKDDGpfRVTTDDGTEYEAKAVIIATGAGPRKLG-------LPGEEEFEG----RGVSYCATCDGFFF 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 154 TNpaertalQTFVIIGGGPTGVELAGTIAELAKdtlardfrsidprttRVVLIEAGTRLlpvfpeKLSEYT-RRALEKLG 232
Cdd:COG0492   140 RG-------KDVVVVGGGDSALEEALYLTKFAS---------------KVTLIHRRDEL------RASKILvERLRANPK 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 233 VEVALGAPVT----DCSSEGVIVAG------KQLAARTIVWAAGvqASPAARWL---NAESDRAGRVLVTPDL--SVPRr 297
Cdd:COG0492   192 IEVLWNTEVTeiegDGRVEGVTLKNvktgeeKELEVDGVFVAIG--LKPNTELLkglGLELDEDGYIVVDEDMetSVPG- 268


                  ....*...
gi 2223346068 298 peIFVIGD 305
Cdd:COG0492   269 --VFAAGD 274
PRK07251 PRK07251
FAD-containing oxidoreductase;
105-266 5.18e-06

FAD-containing oxidoreductase;


Pssm-ID: 180907 [Multi-domain]  Cd Length: 438  Bit Score: 48.59  E-value: 5.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 105 DTLVLATGATHAyfgrdewEPHAPGLKTLE---DATTIRgrilgafeqaERSTNPaertalQTFVIIGGGPTGVELAGTI 181
Cdd:PRK07251  120 ETIVINTGAVSN-------VLPIPGLADSKhvyDSTGIQ----------SLETLP------ERLGIIGGGNIGLEFAGLY 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 182 AELAkdtlardfrsidprtTRVVLIEAGTRLLPVFPEKLSEYTRRALEKLGVEVALGAPVTDCSSEG----VIVAGKQLA 257
Cdd:PRK07251  177 NKLG---------------SKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGdqvlVVTEDETYR 241


                  ....*....
gi 2223346068 258 ARTIVWAAG 266
Cdd:PRK07251  242 FDALLYATG 250
PRK04965 PRK04965
NADH:flavorubredoxin reductase NorW;
16-323 7.18e-06

NADH:flavorubredoxin reductase NorW;


Pssm-ID: 179902 [Multi-domain]  Cd Length: 377  Bit Score: 47.99  E-value: 7.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  16 GagfggldvvNGFSG-----------ADVDITIIDRRNYHLF-QPLLYQVAGASLSTSEIawpIRHL---FRNRQNVqTL 80
Cdd:PRK04965    9 G---------SGFAArqlvknirkqdAHIPITLITADSGDEYnKPDLSHVFSQGQRADDL---TRQSageFAEQFNL-RL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  81 MAE--VQGVDADARQVILdNGSTVGYDTLVLATGAThAYFgrdewePHAPGlktleDATTIRGRILGAFEQAERSTNPAE 158
Cdd:PRK04965   76 FPHtwVTDIDAEAQVVKS-QGNQWQYDKLVLATGAS-AFV------PPIPG-----RELMLTLNSQQEYRAAETQLRDAQ 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 159 RTalqtfVIIGGGptgveLAGTiaELAKDtLARDFRsidprttRVVLIEAGTRLLP-VFPEKLSEYTRRALEKLGVEVAL 237
Cdd:PRK04965  143 RV-----LVVGGG-----LIGT--ELAMD-LCRAGK-------AVTLVDNAASLLAsLMPPEVSSRLQHRLTEMGVHLLL 202

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 238 GAPV--TDCSSEGVIV---AGKQLAARTIVWAAGVQASPA-ARWLNAESDRAGRV---LVTPDlsvprrPEIFVIGDTAA 308
Cdd:PRK04965  203 KSQLqgLEKTDSGIRAtldSGRSIEVDAVIAAAGLRPNTAlARRAGLAVNRGIVVdsyLQTSA------PDIYALGDCAE 276

                         330
                  ....*....|....*
gi 2223346068 309 SampNGKYVPGIAPA 323
Cdd:PRK04965  277 I---NGQVLPFLQPI 288
PRK09754 PRK09754
phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
 90-314 9.00e-06

phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional


Pssm-ID: 170080 [Multi-domain]  Cd Length: 396  Bit Score: 47.61  E-value: 9.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  90 DARQVILDNGSTVGYDTLVLATGATHAYFG-RDEWEPHAPGLKTLEDATTIRGRIlgafeQAERSTnpaertalqtfVII 168
Cdd:PRK09754   87 DTRELVLTNGESWHWDQLFIATGAAARPLPlLDALGERCFTLRHAGDAARLREVL-----QPERSV-----------VIV 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 169 GGGPTGVELAGTIAELakdtlardfrsidpRTTRVVLIEAGTRLLPVFPEKLSEYTRRALEKLGVEVALGAPVTDCSSEG 248
Cdd:PRK09754  151 GAGTIGLELAASATQR--------------RCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGE 216

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2223346068 249 VIV----AGKQLAARTIVWAAGVQASPA-ARWLNAESDRAgrvLVTPDLSVPRRPEIFVIGDTAASAMPNG 314
Cdd:PRK09754  217 KVEltlqSGETLQADVVIYGIGISANDQlAREANLDTANG---IVIDEACRTCDPAIFAGGDVAITRLDNG 284
PRK06370 PRK06370
FAD-containing oxidoreductase;
72-305 1.05e-05

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 47.50  E-value: 1.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  72 RNRQNVQTLMAEVQGVD--------ADARQVILDnGSTVGYDTLVLATGAthayfgrdewEPHAPGLKTLEDA-----TT 138
Cdd:PRK06370   95 RSRHGSEQWLRGLEGVDvfrgharfESPNTVRVG-GETLRAKRIFINTGA----------RAAIPPIPGLDEVgyltnET 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 139 IrgrilgaFEQAERstnPaERtalqtFVIIGGGPTGVELAgtiaelakdTLARDFRSidprttRVVLIEAGTRLLPVFPE 218
Cdd:PRK06370  164 I-------FSLDEL---P-EH-----LVIIGGGYIGLEFA---------QMFRRFGS------EVTVIERGPRLLPREDE 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 219 KLSEYTRRALEKLGVEVALGAPVTDCS--SEGVIV------AGKQLAARTIVWAAGvqASPAARWLNAE-----SDRAGR 285
Cdd:PRK06370  213 DVAAAVREILEREGIDVRLNAECIRVErdGDGIAVgldcngGAPEITGSHILVAVG--RVPNTDDLGLEaagveTDARGY 290

                         250       260
                  ....*....|....*....|..
gi 2223346068 286 VLVTPDL--SVPRrpeIFVIGD 305
Cdd:PRK06370  291 IKVDDQLrtTNPG---IYAAGD 309
PRK05249 PRK05249
Si-specific NAD(P)(+) transhydrogenase;
163-332 3.63e-05

Si-specific NAD(P)(+) transhydrogenase;


Pssm-ID: 235373 [Multi-domain]  Cd Length: 461  Bit Score: 45.92  E-value: 3.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 163 QTFVIIGGGPTGVELAgTIaelakdtlardFRSIDprtTRVVLIEAGTRLLPVFPEKLSEYTRRALEKLGVEVALGAPVT 242
Cdd:PRK05249  176 RSLIIYGAGVIGCEYA-SI-----------FAALG---VKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVE 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 243 DC--SSEGVIVA---GKQLAARTIVWAAGVQASPAARWLNA---ESDRAGRVLVTPDL--SVprrPEIFVIGDtaasamp 312
Cdd:PRK05249  241 KVegGDDGVIVHlksGKKIKADCLLYANGRTGNTDGLNLENaglEADSRGQLKVNENYqtAV---PHIYAVGD------- 310

                         170       180
                  ....*....|....*....|...
gi 2223346068 313 ngkyV---PGIAPAAKQQGKYVA 332
Cdd:PRK05249  311 ----VigfPSLASASMDQGRIAA 329
PRK12814 PRK12814
putative NADPH-dependent glutamate synthase small subunit; Provisional
 166-347 7.17e-05

putative NADPH-dependent glutamate synthase small subunit; Provisional


Pssm-ID: 139246 [Multi-domain]  Cd Length: 652  Bit Score: 45.10  E-value: 7.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 166 VIIGGGPTGVELAGTIAELAKDTLARDFRsidpRTT------RVVLIEA---GTRL----LPVFPEKLSEytrrALEKLG 232
Cdd:PRK12814  327 VVIGGGNTAIDAARTALRLGAESVTILYR----RTReempanRAEIEEAlaeGVSLrelaAPVSIERSEG----GLELTA 398

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 233 VEVALGAPVTDCSSEGVIVAGKQ--LAARTIVWAAGVQASPA-ARWLNAESDRAGRVLVTPDLSVPRRPEIFVIGDTAAS 309
Cdd:PRK12814  399 IKMQQGEPDESGRRRPVPVEGSEftLQADTVISAIGQQVDPPiAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTG 478

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2223346068 310 ampngkyvPGIAPAAKQQGKYVANLVKRRLKGKSVDEP 347
Cdd:PRK12814  479 --------ADIAINAVEQGKRAAHAIDLFLNGKPVTAP 508
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 98-333 2.20e-04

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 43.24  E-value: 2.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068  98 NGSTVGYDTLVLATGATHAYFgrdewephaPGLKTLEDAttirgRIL---GAFEQAERstnPaertalQTFVIIGGGPTG 174
Cdd:PRK06292  125 NGERIEAKNIVIATGSRVPPI---------PGVWLILGD-----RLLtsdDAFELDKL---P------KSLAVIGGGVIG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 175 VELAGTIAELAkdtlardfrsidprtTRVVLIEAGTRLLPVFPEKLSEYTRRALEKlGVEVALGAPVTDCSSEG---VIV 251
Cdd:PRK06292  182 LELGQALSRLG---------------VKVTVFERGDRILPLEDPEVSKQAQKILSK-EFKIKLGAKVTSVEKSGdekVEE 245

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 252 AGKQLAARTIVW-----AAGVQasPAARWLNAES-----DRAGRVLVTPDL--SVPRrpeIFVIGDTAASAMpngkyvpg 319
Cdd:PRK06292  246 LEKGGKTETIEAdyvlvATGRR--PNTDGLGLENtgielDERGRPVVDEHTqtSVPG---IYAAGDVNGKPP-------- 312

                         250
                  ....*....|....
gi 2223346068 320 IAPAAKQQGKYVAN 333
Cdd:PRK06292  313 LLHEAADEGRIAAE 326
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
215-317 7.67e-04

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 41.43  E-value: 7.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 215 VFPEKLSEYTRRALEKLGVEVALGAPVTDCSSEG-----VIVAGKQLAARTIVWAAGVQASPAARWLNAESD---RAGRV 286
Cdd:COG0665   148 VDPAKLVRALARAARAAGVRIREGTPVTGLEREGgrvtgVRTERGTVRADAVVLAAGAWSARLLPMLGLRLPlrpVRGYV 227

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2223346068 287 LVTPDLSVPRRPEIFVIGDTAASAMPNGKYV 317
Cdd:COG0665   228 LVTEPLPDLPLRPVLDDTGVYLRPTADGRLL 258
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
166-282 2.53e-03

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 39.72  E-value: 2.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 166 VIIGGGPTGveLAGTIaelakdTLARdfrsidpRTTRVVLIEAG------TRLLPV-----FPEKLS--EYTRRALE--- 229
Cdd:COG0492     4 VIIGAGPAG--LTAAI------YAAR-------AGLKTLVIEGGepggqlATTKEIenypgFPEGISgpELAERLREqae 68

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2223346068 230 KLGVEVALGApVT--DCSSEGVIVA---GKQLAARTIVWAAGVQaspaARWLNAESDR 282
Cdd:COG0492    69 RFGAEILLEE-VTsvDKDDGPFRVTtddGTEYEAKAVIIATGAG----PRKLGLPGEE 121
PRK05732 PRK05732
2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
 166-242 4.12e-03

2-octaprenyl-6-methoxyphenyl hydroxylase; Validated


Pssm-ID: 235584 [Multi-domain]  Cd Length: 395  Bit Score: 39.07  E-value: 4.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 166 VIIGGGPTGVELAGTIAELAKDTLardfrsidprttRVVLIEA---GTRLLPVFPEK---LSEYTRRALEKLGVEVALGA 239
Cdd:PRK05732    7 IIVGGGMAGATLALALSRLSHGGL------------PVALIEAfapESDAHPGFDARaiaLAAGTCQQLARLGVWQALAD 74


                  ...
gi 2223346068 240 PVT 242
Cdd:PRK05732   75 CAT 77
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
222-302 7.85e-03

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 38.20  E-value: 7.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2223346068 222 EYTR---RALEKLGVEVALGAPVTDCSSEG----VIVAGKQLAARTIVWAAGVQASPAARWLNAESDRAGrvlvtpdlsV 294
Cdd:COG0579   154 ALTRalaENAEANGVELLLNTEVTGIEREGdgweVTTNGGTIRARFVINAAGLYADRLAQMAGIGKDFGI---------F 224


                  ....*...
gi 2223346068 295 PRRPEIFV 302
Cdd:COG0579   225 PVKGEYLV 232
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH