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Conserved domains on  [gi|2225886900|ref|WP_245895264|]
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flagellar motor switch protein FliN [Devosia submarina]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK08916 super family cl35748
flagellar motor switch protein FliN;
7-94 4.40e-45

flagellar motor switch protein FliN;


The actual alignment was detected with superfamily member PRK08916:

Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 141.04  E-value: 4.40e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2225886900   7 GSAPETYVERTAADLEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLG 86
Cdd:PRK08916   25 GYNEEEQADRTAADLEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAIDIYVNNRLVARGEVVLVEDRLG 104


                  ....*...
gi 2225886900  87 VTMTEIIK 94
Cdd:PRK08916  105 VTMTEIIK 112
 
Name Accession Description Interval E-value
PRK08916 PRK08916
flagellar motor switch protein FliN;
7-94 4.40e-45

flagellar motor switch protein FliN;


Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 141.04  E-value: 4.40e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2225886900   7 GSAPETYVERTAADLEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLG 86
Cdd:PRK08916   25 GYNEEEQADRTAADLEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAIDIYVNNRLVARGEVVLVEDRLG 104


                  ....*...
gi 2225886900  87 VTMTEIIK 94
Cdd:PRK08916  105 VTMTEIIK 112
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 15-94 2.15e-27

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 98.15  E-value: 2.15e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2225886900  15 ERTAADLEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEIIK 94
Cdd:COG1886    93 EEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDDRFGVRITEIVS 172
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 20-96 5.39e-26

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 91.50  E-value: 5.39e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2225886900 20 DLEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEIIKPQ 96
Cdd:TIGR02480  1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDSS 77
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 29-94 2.39e-18

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 71.60  E-value: 2.39e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2225886900 29 VRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEIIK 94
Cdd:pfam01052  1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
 
Name Accession Description Interval E-value
PRK08916 PRK08916
flagellar motor switch protein FliN;
7-94 4.40e-45

flagellar motor switch protein FliN;


Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 141.04  E-value: 4.40e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2225886900   7 GSAPETYVERTAADLEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLG 86
Cdd:PRK08916   25 GYNEEEQADRTAADLEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAIDIYVNNRLVARGEVVLVEDRLG 104


                  ....*...
gi 2225886900  87 VTMTEIIK 94
Cdd:PRK08916  105 VTMTEIIK 112
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 15-94 2.15e-27

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 98.15  E-value: 2.15e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2225886900  15 ERTAADLEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEIIK 94
Cdd:COG1886    93 EEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDDRFGVRITEIVS 172
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 20-96 5.39e-26

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 91.50  E-value: 5.39e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2225886900 20 DLEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEIIKPQ 96
Cdd:TIGR02480  1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDSS 77
PRK08119 PRK08119
flagellar motor switch protein; Validated
 21-96 4.49e-24

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 93.39  E-value: 4.49e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2225886900  21 LEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEIIKPQ 96
Cdd:PRK08119  300 LDLILDVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAGEPVDILVNGKLIAKGEVVVIDENFGVRITDIVSQS 375
fliN PRK07963
flagellar motor switch protein FliN; Validated
 20-95 6.43e-20

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 77.91  E-value: 6.43e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2225886900  20 DLEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEIIKP 95
Cdd:PRK07963   53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITP 128
fliN PRK05698
flagellar motor switch protein FliN;
7-95 6.01e-19

flagellar motor switch protein FliN;


Pssm-ID: 168189 [Multi-domain]  Cd Length: 155  Bit Score: 75.99  E-value: 6.01e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2225886900   7 GSAPET--YVERTAADLEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGK 84
Cdd:PRK05698   57 GSSPKPnePVSLEGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEK 136

                          90
                  ....*....|.
gi 2225886900  85 LGVTMTEIIKP 95
Cdd:PRK05698  137 FGIRLTDVISP 147
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 29-94 2.39e-18

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 71.60  E-value: 2.39e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2225886900 29 VRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEIIK 94
Cdd:pfam01052  1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
fliN PRK08983
flagellar motor switch protein FliN;
15-93 1.79e-16

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 68.62  E-value: 1.79e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2225886900  15 ERTAADLEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEII 93
Cdd:PRK08983   39 EDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVI 117
PRK08433 PRK08433
flagellar motor switch protein FliN;
11-93 3.80e-15

flagellar motor switch protein FliN;


Pssm-ID: 181423 [Multi-domain]  Cd Length: 111  Bit Score: 64.77  E-value: 3.80e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2225886900  11 ETYVERTAADLEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMT 90
Cdd:PRK08433   16 STYLEELICDYENLLDIEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVELYINGRIIGKGEVMVYEKNLAIRIN 95


                  ...
gi 2225886900  91 EII 93
Cdd:PRK08433   96 EIL 98
PRK06782 PRK06782
flagellar motor switch protein; Reviewed
 10-93 1.62e-13

flagellar motor switch protein; Reviewed


Pssm-ID: 235861 [Multi-domain]  Cd Length: 528  Bit Score: 64.09  E-value: 1.62e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2225886900  10 PETYVERTAADLEA-----VFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGK 84
Cdd:PRK06782  440 PIEFKEVKQMEPVYmdtsiLQDVPMNVKVVFGSTKKTIQDILSLQENEVVVLDEDIDEPIRIYVNGVLVAYGELVNVDGF 519


                  ....*....
gi 2225886900  85 LGVTMTEII 93
Cdd:PRK06782  520 FGVKVTKSL 528
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
 26-87 5.68e-13

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 62.43  E-value: 5.68e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2225886900  26 DVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGV 87
Cdd:TIGR02551 232 QLPVTLEFELGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGGRLGV 293
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
22-95 6.32e-13

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 62.10  E-value: 6.32e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2225886900  22 EAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEIIKP 95
Cdd:COG1868   250 EELEEAEVELSAELGETEITLRELLNLKVGDVIPLDKKVDDPLTVYVGGVPKFEGKPGVSNGRLAVKITEIIEE 323
PRK06033 PRK06033
flagellar motor switch protein FliN;
27-91 2.22e-12

flagellar motor switch protein FliN;


Pssm-ID: 180359 [Multi-domain]  Cd Length: 83  Bit Score: 57.08  E-value: 2.22e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2225886900 27 VPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTE 91
Cdd:PRK06033   7 VSVELMVVLGRSSMPIHQVLRMGRGAVIPLDATEADEVWILANNHPIARGEVLIDRNRIAVEVTR 71
PRK08432 PRK08432
flagellar motor switch protein FliY; Validated
 21-92 3.25e-12

flagellar motor switch protein FliY; Validated


Pssm-ID: 236264 [Multi-domain]  Cd Length: 283  Bit Score: 60.02  E-value: 3.25e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2225886900  21 LEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEI 92
Cdd:PRK08432  200 INMILDVKLPVRVRIGQKKMLLKDVLSMDIGSVVELNQLANDPLEILVDDKVIAKGEVVIVDGNFGIQITEI 271
PRK06788 PRK06788
flagellar motor switch protein; Validated
 15-92 2.09e-10

flagellar motor switch protein; Validated


Pssm-ID: 180693 [Multi-domain]  Cd Length: 119  Bit Score: 52.96  E-value: 2.09e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2225886900  15 ERTAADLEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEI 92
Cdd:PRK06788   22 EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
PRK06789 PRK06789
flagellar motor switch protein; Validated
 26-92 3.24e-09

flagellar motor switch protein; Validated


Pssm-ID: 180694 [Multi-domain]  Cd Length: 74  Bit Score: 48.71  E-value: 3.24e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2225886900 26 DVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEI 92
Cdd:PRK06789   6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGKMYVEIVEL 72
PRK08158 PRK08158
YscQ/HrcQ family type III secretion apparatus protein;
11-87 1.01e-08

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181259 [Multi-domain]  Cd Length: 303  Bit Score: 50.64  E-value: 1.01e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2225886900  11 ETYVERTAADLEAVFDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGV 87
Cdd:PRK08158  214 ENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDDTLGV 290
fliM PRK06666
flagellar motor switch protein FliM; Validated
 26-95 1.61e-07

flagellar motor switch protein FliM; Validated


Pssm-ID: 235849 [Multi-domain]  Cd Length: 337  Bit Score: 47.14  E-value: 1.61e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2225886900  26 DVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEIIKP 95
Cdd:PRK06666  257 QAEVELVAELGEIKLTLSEILNLKVGDVIPLEKPADDPLIVYVDGKPKFLCQYGKSNGRKALQIEELIER 326
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
26-92 1.00e-06

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 44.73  E-value: 1.00e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2225886900  26 DVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLGVTMTEI 92
Cdd:PRK06933  236 QLPVQVSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRVERL 302
PRK08035 PRK08035
YscQ/HrcQ family type III secretion apparatus protein;
7-91 8.21e-04

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181204 [Multi-domain]  Cd Length: 323  Bit Score: 36.72  E-value: 8.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2225886900   7 GSAPETYVERTAADLEavfDVPVRISVVLGRTKMPVSALLKLDTGTVIELDRQVGEAVEIFINERLVARGEIVLVDGKLG 86
Cdd:PRK08035  234 GSPMSKSPGTSSVELE---QLPQQVVMEIGRLSLPIGQLRQLAVGDVLPVGGCFYPEVTIRLNGRIIGQGELLACDNELM 310


                  ....*
gi 2225886900  87 VTMTE 91
Cdd:PRK08035  311 VRITR 315
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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