NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2226884854|ref|WP_246567528|]
View 

hypothetical protein, partial [Gemmobacter fulva]

Protein Classification

transposase( domain architecture ID 11459289)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism; similar to Escherichia coli IS150 protein InsAB

CATH:  1.10.10.10
Gene Ontology:  GO:0006313|GO:0003677|GO:0004803
PubMed:  20885819

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
8-91 9.81e-13

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


:

Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 59.17  E-value: 9.81e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2226884854   8 RRHSTAFKLQLCQDIRAGVIGRRDAQRSHNISANLIQLWLTQFDRGELTDEEAEASVIAEyEARIAALERKVGQLTMELD 87
Cdd:COG2963     6 RRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRTTPE-QAEIRRLRKELRRLEMEND 84


                  ....
gi 2226884854  88 LAKK 91
Cdd:COG2963    85 ILKK 88
 
Name Accession Description Interval E-value
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
8-91 9.81e-13

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 59.17  E-value: 9.81e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2226884854   8 RRHSTAFKLQLCQDIRAGVIGRRDAQRSHNISANLIQLWLTQFDRGELTDEEAEASVIAEyEARIAALERKVGQLTMELD 87
Cdd:COG2963     6 RRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRTTPE-QAEIRRLRKELRRLEMEND 84


                  ....
gi 2226884854  88 LAKK 91
Cdd:COG2963    85 ILKK 88
PRK09413 PRK09413
IS2 repressor TnpA; Reviewed
 8-91 9.92e-04

IS2 repressor TnpA; Reviewed


Pssm-ID: 181833  Cd Length: 121  Bit Score: 36.32  E-value: 9.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2226884854   8 RRHSTAFKLQLCQDIRAGVIGRRDAQRSHNISANLIQLWLTQFDRGELT-----DEEAEASVIAEYEARIAALERKVGQL 82
Cdd:PRK09413   11 RRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTavaagEQVVPASELAAAMKQIKELQRLLGKK 90


                  ....*....
gi 2226884854  83 TMELDLAKK 91
Cdd:PRK09413   91 TMENELLKE 99
 
Name Accession Description Interval E-value
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
8-91 9.81e-13

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 59.17  E-value: 9.81e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2226884854   8 RRHSTAFKLQLCQDIRAGVIGRRDAQRSHNISANLIQLWLTQFDRGELTDEEAEASVIAEyEARIAALERKVGQLTMELD 87
Cdd:COG2963     6 RRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRTTPE-QAEIRRLRKELRRLEMEND 84


                  ....
gi 2226884854  88 LAKK 91
Cdd:COG2963    85 ILKK 88
PRK09413 PRK09413
IS2 repressor TnpA; Reviewed
 8-91 9.92e-04

IS2 repressor TnpA; Reviewed


Pssm-ID: 181833  Cd Length: 121  Bit Score: 36.32  E-value: 9.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2226884854   8 RRHSTAFKLQLCQDIRAGVIGRRDAQRSHNISANLIQLWLTQFDRGELT-----DEEAEASVIAEYEARIAALERKVGQL 82
Cdd:PRK09413   11 RRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTavaagEQVVPASELAAAMKQIKELQRLLGKK 90


                  ....*....
gi 2226884854  83 TMELDLAKK 91
Cdd:PRK09413   91 TMENELLKE 99
FepB COG0614
ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and ...
 38-83 7.08e-03

ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism];


Pssm-ID: 440379 [Multi-domain]  Cd Length: 264  Bit Score: 34.59  E-value: 7.08e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2226884854  38 ISANLIQLWLTQFDR-GELTDEEAEA-SVIAEYEARIAALERKVGQLT 83
Cdd:COG0614    89 LDPRSLEDLYESIRLlGELLGREERAeALIAEYEARLAAVRARLAGAE 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH