|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
69-379 |
2.82e-145 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 413.65 E-value: 2.82e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 69 FLLRMKNAVRRTRQNLVGRLDTLVRGKKVISPEVLDELEEILIGADIGVRTTLDLVEKIRAQVDRKLLNDTDELKRVLRQ 148
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 149 ELLALLRAPVKsvsgravrsELDIPTDiRPYvmmvvgvngvgKTTTIAKLAHLIKREGNDVI-----------Vcaadtf 217
Cdd:COG0552 81 ELLEILDPVDK---------PLAIEEK-KPFvilvvgvngvgKTTTIGKLAHRLKAEGKSVLlaagdtfraaaI------ 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 218 raaaaDQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRDADVVIVDTAGRLHNKVNLMNELEKMSRIARREVPQAP 297
Cdd:COG0552 145 -----EQLEVWGERVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAP 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 298 HEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIARELGLPIRYVGTGEQLDDLTVFSPEAFVDSL 377
Cdd:COG0552 220 HEVLLVLDATTGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDAL 299
|
..
gi 2239878801 378 FE 379
Cdd:COG0552 300 FG 301
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
63-379 |
2.43e-142 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 406.79 E-value: 2.43e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 63 EPPRETFLLRMKNAVRRTRQNLVGRLDTLVRGKKvISPEVLDELEEILIGADIGVRTTLDLVEKIRAQVDRKLLNDTDEL 142
Cdd:PRK10416 10 KEKKEGWFERLKKGLSKTRENFGEGINGLFAKKK-IDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 143 KRVLRQELLALLRAPVKSvsgravrseLDIPTDiRPYvmmvvgvngvgKTTTIAKLAHLIKREGNDVIVCAADTFRAAAA 222
Cdd:PRK10416 89 KELLKEELAEILEPVEKP---------LNIEEK-KPFvilvvgvngvgKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAI 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 223 DQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRDADVVIVDTAGRLHNKVNLMNELEKMSRIARREVPQAPHEVLL 302
Cdd:PRK10416 159 EQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLL 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2239878801 303 VLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIARELGLPIRYVGTGEQLDDLTVFSPEAFVDSLFE 379
Cdd:PRK10416 239 VLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
101-378 |
1.85e-103 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 306.49 E-value: 1.85e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 101 EVLDELEEILIGADIGVRTTLDLVEKIRAQVDRKLLNDTDELKRVLRQELLALLrapvKSVSGRAVRSELDIPTDiRPYV 180
Cdd:TIGR00064 5 DFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEIL----KEDLLKNTDLELIVEEN-KPNV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 181 MMVVGVNGVGKTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRD 260
Cdd:TIGR00064 80 ILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 261 ADVVIVDTAGRLHNKVNLMNELEKMSRIARREVPQAPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGG 340
Cdd:TIGR00064 160 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGG 239
|
250 260 270
....*....|....*....|....*....|....*...
gi 2239878801 341 IVVAIARELGLPIRYVGTGEQLDDLTVFSPEAFVDSLF 378
Cdd:TIGR00064 240 IILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
191-377 |
3.64e-96 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 284.85 E-value: 3.64e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRDADVVIVDTAG 270
Cdd:cd17874 13 KTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKARGIDVVLIDTAG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 271 RLHNKVNLMNELEKMSRIARREVPQAPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIARELG 350
Cdd:cd17874 93 RLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKGGIVLSIADELK 172
|
170 180
....*....|....*....|....*..
gi 2239878801 351 LPIRYVGTGEQLDDLTVFSPEAFVDSL 377
Cdd:cd17874 173 IPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
191-377 |
2.01e-83 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 252.08 E-value: 2.01e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRDADVVIVDTAG 270
Cdd:pfam00448 13 KTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAENYDVVLVDTAG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 271 RLHNKVNLMNELEKMSRIArrevpqAPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIARELG 350
Cdd:pfam00448 93 RLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALSIVAETG 166
|
170 180
....*....|....*....|....*..
gi 2239878801 351 LPIRYVGTGEQLDDLTVFSPEAFVDSL 377
Cdd:pfam00448 167 KPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
191-379 |
3.20e-81 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 246.55 E-value: 3.20e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAHLIKREGND--VIVCAadtfraaaaD--------QLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRD 260
Cdd:smart00962 14 KTTTIAKLAARLKLKGGKkvLLVAA---------DtfraaaveQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAKARG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 261 ADVVIVDTAGRLHNKVNLMNELEKMSRIARrevpqaPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGG 340
Cdd:smart00962 85 YDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGG 158
|
170 180 190
....*....|....*....|....*....|....*....
gi 2239878801 341 IVVAIARELGLPIRYVGTGEQLDDLTVFSPEAFVDSLFE 379
Cdd:smart00962 159 AALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
3-66 |
6.61e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 38.39 E-value: 6.61e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2239878801 3 AEARPAPEVTAEPARRGLlSRWLGWPAPADTPAPGGSPDAAPtgqPVTNLPPVaPPAGVAEPPR 66
Cdd:PRK14954 394 APEPDLPQPDRHPGPAKP-EAPGARPAELPSPASAPTPEQQP---PVARSAPL-PPSPQASAPR 452
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
69-379 |
2.82e-145 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 413.65 E-value: 2.82e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 69 FLLRMKNAVRRTRQNLVGRLDTLVRGKKVISPEVLDELEEILIGADIGVRTTLDLVEKIRAQVDRKLLNDTDELKRVLRQ 148
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 149 ELLALLRAPVKsvsgravrsELDIPTDiRPYvmmvvgvngvgKTTTIAKLAHLIKREGNDVI-----------Vcaadtf 217
Cdd:COG0552 81 ELLEILDPVDK---------PLAIEEK-KPFvilvvgvngvgKTTTIGKLAHRLKAEGKSVLlaagdtfraaaI------ 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 218 raaaaDQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRDADVVIVDTAGRLHNKVNLMNELEKMSRIARREVPQAP 297
Cdd:COG0552 145 -----EQLEVWGERVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAP 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 298 HEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIARELGLPIRYVGTGEQLDDLTVFSPEAFVDSL 377
Cdd:COG0552 220 HEVLLVLDATTGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDAL 299
|
..
gi 2239878801 378 FE 379
Cdd:COG0552 300 FG 301
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
63-379 |
2.43e-142 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 406.79 E-value: 2.43e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 63 EPPRETFLLRMKNAVRRTRQNLVGRLDTLVRGKKvISPEVLDELEEILIGADIGVRTTLDLVEKIRAQVDRKLLNDTDEL 142
Cdd:PRK10416 10 KEKKEGWFERLKKGLSKTRENFGEGINGLFAKKK-IDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 143 KRVLRQELLALLRAPVKSvsgravrseLDIPTDiRPYvmmvvgvngvgKTTTIAKLAHLIKREGNDVIVCAADTFRAAAA 222
Cdd:PRK10416 89 KELLKEELAEILEPVEKP---------LNIEEK-KPFvilvvgvngvgKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAI 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 223 DQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRDADVVIVDTAGRLHNKVNLMNELEKMSRIARREVPQAPHEVLL 302
Cdd:PRK10416 159 EQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLL 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2239878801 303 VLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIARELGLPIRYVGTGEQLDDLTVFSPEAFVDSLFE 379
Cdd:PRK10416 239 VLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
101-378 |
1.85e-103 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 306.49 E-value: 1.85e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 101 EVLDELEEILIGADIGVRTTLDLVEKIRAQVDRKLLNDTDELKRVLRQELLALLrapvKSVSGRAVRSELDIPTDiRPYV 180
Cdd:TIGR00064 5 DFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEIL----KEDLLKNTDLELIVEEN-KPNV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 181 MMVVGVNGVGKTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRD 260
Cdd:TIGR00064 80 ILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 261 ADVVIVDTAGRLHNKVNLMNELEKMSRIARREVPQAPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGG 340
Cdd:TIGR00064 160 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGG 239
|
250 260 270
....*....|....*....|....*....|....*...
gi 2239878801 341 IVVAIARELGLPIRYVGTGEQLDDLTVFSPEAFVDSLF 378
Cdd:TIGR00064 240 IILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
191-377 |
3.64e-96 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 284.85 E-value: 3.64e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRDADVVIVDTAG 270
Cdd:cd17874 13 KTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKARGIDVVLIDTAG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 271 RLHNKVNLMNELEKMSRIARREVPQAPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIARELG 350
Cdd:cd17874 93 RLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKGGIVLSIADELK 172
|
170 180
....*....|....*....|....*..
gi 2239878801 351 LPIRYVGTGEQLDDLTVFSPEAFVDSL 377
Cdd:cd17874 173 IPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
191-377 |
2.01e-83 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 252.08 E-value: 2.01e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRDADVVIVDTAG 270
Cdd:pfam00448 13 KTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAENYDVVLVDTAG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 271 RLHNKVNLMNELEKMSRIArrevpqAPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIARELG 350
Cdd:pfam00448 93 RLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALSIVAETG 166
|
170 180
....*....|....*....|....*..
gi 2239878801 351 LPIRYVGTGEQLDDLTVFSPEAFVDSL 377
Cdd:pfam00448 167 KPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
191-379 |
3.20e-81 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 246.55 E-value: 3.20e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAHLIKREGND--VIVCAadtfraaaaD--------QLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRD 260
Cdd:smart00962 14 KTTTIAKLAARLKLKGGKkvLLVAA---------DtfraaaveQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAKARG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 261 ADVVIVDTAGRLHNKVNLMNELEKMSRIARrevpqaPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGG 340
Cdd:smart00962 85 YDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGG 158
|
170 180 190
....*....|....*....|....*....|....*....
gi 2239878801 341 IVVAIARELGLPIRYVGTGEQLDDLTVFSPEAFVDSLFE 379
Cdd:smart00962 159 AALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
101-379 |
1.39e-69 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 221.77 E-value: 1.39e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 101 EVLDELEEILIGADIGVRTTLDLVEKIRAQVD---RKLLNDTDEL-KRVLRQELLALLRapvksvSGRAVRSELDIPTDI 176
Cdd:PRK14974 65 DLLEELELELLESDVALEVAEEILESLKEKLVgkkVKRGEDVEEIvKNALKEALLEVLS------VGDLFDLIEEIKSKG 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 177 RPYVMMVVGVNGVGKTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAA 256
Cdd:PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 257 KSRDADVVIVDTAGRLHNKVNLMNELEKMSRIARrevpqaPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGT 336
Cdd:PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK------PDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDAD 292
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2239878801 337 AKGGIVVAIARELGLPIRYVGTGEQLDDLTVFSPEAFVDSLFE 379
Cdd:PRK14974 293 AKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
190-377 |
5.11e-63 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 199.91 E-value: 5.11e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 190 GKTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRDADVVIVDTA 269
Cdd:cd03115 12 GKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLEGYDVLLVDTA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 270 GRLHNKVNLMNELEKMSRIarrevpQAPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIAREL 349
Cdd:cd03115 92 GRLQKDEPLMEELKKVKEV------ESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALSIVAET 165
|
170 180
....*....|....*....|....*...
gi 2239878801 350 GLPIRYVGTGEQLDDLTVFSPEAFVDSL 377
Cdd:cd03115 166 KKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
191-375 |
6.44e-57 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 191.39 E-value: 6.44e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRDADVVIVDTAG 270
Cdd:COG0541 113 KTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAG 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 271 RLHNKVNLMNELEKMSRIARrevpqaPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIARELG 350
Cdd:COG0541 193 RLHIDEELMDELKAIKAAVN------PDETLLVVDAMTGQDAVNVAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTG 266
|
170 180
....*....|....*....|....*
gi 2239878801 351 LPIRYVGTGEQLDDLTVFSPEAFVD 375
Cdd:COG0541 267 KPIKFIGTGEKLDDLEPFHPDRMAS 291
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
191-371 |
2.91e-53 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 174.71 E-value: 2.91e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRDADVVIVDTAG 270
Cdd:cd18539 13 KTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKEEGFDVVIVDTAG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 271 RLHNKVNLMNELEKMSRIARrevpqaPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIARELG 350
Cdd:cd18539 93 RLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALSIRHVTG 166
|
170 180
....*....|....*....|.
gi 2239878801 351 LPIRYVGTGEQLDDLTVFSPE 371
Cdd:cd18539 167 KPIKFIGVGEKIEDLEPFHPD 187
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
82-379 |
9.55e-53 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 180.79 E-value: 9.55e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 82 QNLVGRLDTLvRGKKVISPEVLDE----LEEILIGADIGVRTTLDLVEKIRaqvDRKL-------LNDTDELKRVLRQEL 150
Cdd:PRK00771 3 ESLRDALKKL-AGKSRIDEKTVKEvvkdIQRALLQADVNVKLVKELSKSIK---ERALeeeppkgLTPREHVIKIVYEEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 151 LALLRAPVKsvsgravrsELDIPTdiRPYVMMVVGVNGVGKTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAE 230
Cdd:PRK00771 79 VKLLGEETE---------PLVLPL--KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 231 RVGIPVIQQKPGTDPAAVVYDALQAAKsrDADVVIVDTAGRLHNKVNLMNELEKMSRIARrevpqaPHEVLLVLDAATGQ 310
Cdd:PRK00771 148 KIGVPFYGDPDNKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVK------PDEVLLVIDATIGQ 219
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2239878801 311 NGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIARELGLPIRYVGTGEQLDDLTVFSPEAFV---------DSLFE 379
Cdd:PRK00771 220 QAKNQAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFIsrllgmgdlESLLE 297
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
191-377 |
1.88e-46 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 157.35 E-value: 1.88e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRDADVVIVDTAG 270
Cdd:cd17875 13 KTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKKEKFDIIIVDTSG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 271 RLHNKVNLMNELEKMSRIARrevpqaPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIARELG 350
Cdd:cd17875 93 RHKQEEELFEEMKQISDAVK------PDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALSAVAATG 166
|
170 180
....*....|....*....|....*..
gi 2239878801 351 LPIRYVGTGEQLDDLTVFSPEAFVDSL 377
Cdd:cd17875 167 APIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
97-377 |
1.21e-33 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 129.57 E-value: 1.21e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 97 VISPEVLDE-LEEI---LIGADIGVRTTLDLVEKIRAQVDRKLLNDTDELKRVLRQ----ELLALLRAPVKSVSgravrs 168
Cdd:TIGR01425 21 VIDEEVINTmLKEIctaLLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDavfeELCNLVDPGVEAFT------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 169 eldiPTDIRPYVMMVVGVNGVGKTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDPAAV 248
Cdd:TIGR01425 95 ----PKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKI 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 249 VYDALQAAKSRDADVVIVDTAGRLHNKVNLMNElekmsriaRREVPQA--PHEVLLVLDAATGQNGLEQARQFAKTVPVT 326
Cdd:TIGR01425 171 ASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEE--------MQQVREAikPDSIIFVMDGSIGQAAFGQAKAFKDSVEVG 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2239878801 327 GLVLTKLDGTAKGGIVVAIARELGLPIRYVGTGEQLDDLTVFSPEAFVDSL 377
Cdd:TIGR01425 243 SVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKL 293
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
190-377 |
2.45e-33 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 123.11 E-value: 2.45e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 190 GKTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDPAAVVYDALQAAKSRDADVVIVDTA 269
Cdd:cd17876 12 GKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQGFDVVLIDTA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 270 GRLHNKVNLMNELEKMSRIARrevpqaPHEVLLVLDAATGQNGLEQARQFAKTV----------PVTGLVLTKLDGTA-K 338
Cdd:cd17876 92 GRMQNNEPLMRALAKLIKENN------PDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIVLTKFDTIDdK 165
|
170 180 190
....*....|....*....|....*....|....*....
gi 2239878801 339 GGIVVAIARELGLPIRYVGTGEQLDDLTVFSPEAFVDSL 377
Cdd:cd17876 166 VGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
42-379 |
2.13e-29 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 116.50 E-value: 2.13e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 42 AAPTGQPVTNLPPVAPPAGVAEPPRETFLLRMKNAVRRTRQNLVGRLDTLVRGKKVISPEvLDELEEILIGADIGVRTTL 121
Cdd:COG1419 48 AVDEDEAEKAPAAAAAPAAASAAAEEEELEELRRELAELKELLEEQLSGLAGESARLPPE-LAELLERLLEAGVSPELAR 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 122 DLVEKIRAQVDrkllndTDELKRVLRQELLALLRAPVKSVSGRAVRseldI----PTDIrpyvmmvvgvngvGKTTTIAK 197
Cdd:COG1419 127 ELLEKLPEDLS------AEEAWRALLEALARRLPVAEDPLLDEGGV----IalvgPTGV-------------GKTTTIAK 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 198 LA-HLIKREGNDV---------IvcaadtfraAAADQLTVWAERVGIPVIqqkpgtdpaaVVYDA--LQAA--KSRDADV 263
Cdd:COG1419 184 LAaRFVLRGKKKValittdtyrI---------GAVEQLKTYARILGVPVE----------VAYDPeeLKEAleRLRDKDL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 264 VIVDTAGRLHNKVNLMNELEKMSRIARrevpqaPHEVLLVLDAAT-GQNGLEQARQFaKTVPVTGLVLTKLDGTAKGGIV 342
Cdd:COG1419 245 VLIDTAGRSPRDPELIEELKALLDAGP------PIEVYLVLSATTkYEDLKEIVEAF-SSLGLDGLILTKLDETASLGSI 317
|
330 340 350
....*....|....*....|....*....|....*...
gi 2239878801 343 VAIARELGLPIRYVGTGEQL-DDLTVFSPEAFVDSLFE 379
Cdd:COG1419 318 LNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
191-377 |
3.04e-23 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 95.69 E-value: 3.04e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAHLIK-REGNDVIVCAADTFRAAAADQLTVWAERVGIPViqqkpgtdpaAVVYDALQAAK----SRDADVVI 265
Cdd:cd17873 13 KTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLKTYAEIMGIPV----------EVAEDPEDLADalerLSDRDLIL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 266 VDTAGRLHNKVNLMNELEKMSRIArrevpqAPHEVLLVLDAAT-GQNGLEQARQFaKTVPVTGLVLTKLDGTAKGGIVVA 344
Cdd:cd17873 83 IDTAGRSPRDKEQLEELKELLGAG------EDIEVHLVLSATTkAKDLKEIIERF-SPLGYRGLILTKLDETTSLGSVLS 155
|
170 180 190
....*....|....*....|....*....|....
gi 2239878801 345 IARELGLPIRYVGTGEQL-DDLTVFSPEAFVDSL 377
Cdd:cd17873 156 VLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
28-379 |
3.26e-21 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 94.19 E-value: 3.26e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 28 PAPADTPAPGGSPDAAPTGQPVTNLPPVAPPAGVAEPPRETFLLRMK---NAVRRTRQNLVGRLDTLVRGkkvisPEVLD 104
Cdd:PRK05703 90 SQDALLQAENALPEWKKELEKPSEPKEEEPKAAAESKVVQKELDELRdelKELKNLLEDQLSGLRQVERI-----PPEFA 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 105 ELEEILIGADIGvrttLDLVEKIRAQVDRKLLNDTDELKRVLRQELLALLRAPVKSVSGRAVRSELDIPTDIrpyvmmvv 184
Cdd:PRK05703 165 ELYKRLKRSGLS----PEIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRVEDILKQGGVVALVGPTGV-------- 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 185 gvngvGKTTTIAKLA-HLIKREGNDVI------------VcaadtfraaaaDQLTVWAERVGIPVIQQKPGTDPAavvyD 251
Cdd:PRK05703 233 -----GKTTTLAKLAaRYALLYGKKKValitldtyrigaV-----------EQLKTYAKIMGIPVEVVYDPKELA----K 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 252 ALQAAKSRdaDVVIVDTAGRLHNKVNLMNELEKMSriarrEVPQAPHEVLLVLdAATGQNG-LEQA-RQFaKTVPVTGLV 329
Cdd:PRK05703 293 ALEQLRDC--DVILIDTAGRSQRDKRLIEELKALI-----EFSGEPIDVYLVL-SATTKYEdLKDIyKHF-SRLPLDGLI 363
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 2239878801 330 LTKLDGTAKGGIVVAIARELGLPIRYVGTGEQL-DDLTVFSPEAFVDSLFE 379
Cdd:PRK05703 364 FTKLDETSSLGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
81-154 |
1.90e-13 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 64.88 E-value: 1.90e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2239878801 81 RQNLVGRLDTLVRGKKVIsPEVLDELEEILIGADIGVRTTLDLVEKIRAQVDRKL---LNDTDELKRVLRQELLALL 154
Cdd:smart00963 2 SKALGKLLGELFLTEKDD-EELLEELEEALLEADVGVEVVKEIIERVKEKAKGEVlkgLTPKQEVKKILKEELVKIL 77
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
84-150 |
4.84e-12 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 60.94 E-value: 4.84e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2239878801 84 LVGRLDTLV---RGKKVISPEVLDE----LEEILIGADIGVRTTLDLVEKIR-AQVDRKLLNDTDELKRVLRQEL 150
Cdd:pfam02881 1 LGEKLSSLFkglRGKGKIDEEDLEEalkeLEEALLEADVGVEVVKKIIERLReKAVGEKKLKPPQEVKKILKEEL 75
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
191-365 |
8.35e-08 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 53.84 E-value: 8.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAHLI--KREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDpaavVYDALQaaKSRDADVVIVDT 268
Cdd:PRK12727 363 KTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES----LLDLLE--RLRDYKLVLIDT 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 269 AGRLHNKVNLMNELEKMSriARREVpqaphEVLLVLDAATGQNGL-EQARQFAKTVPvTGLVLTKLDGTAKGGIVVAIAR 347
Cdd:PRK12727 437 AGMGQRDRALAAQLNWLR--AARQV-----TSLLVLPANAHFSDLdEVVRRFAHAKP-QGVVLTKLDETGRFGSALSVVV 508
|
170
....*....|....*....
gi 2239878801 348 ELGLPIRYVGTGEQL-DDL 365
Cdd:PRK12727 509 DHQMPITWVTDGQRVpDDL 527
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
191-378 |
8.04e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 50.49 E-value: 8.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAH--LIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDPAavvydaLQAAKSRDADVVIVDT 268
Cdd:PRK14722 150 KTTTTAKLAArcVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHMVLIDT 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 269 AGrlhnkvnlMNELEKM--SRIARREVPQAPHEVLLVLDAATGQNGLEQARQFAKTVP---------VTGLVLTKLDGTA 337
Cdd:PRK14722 224 IG--------MSQRDRTvsDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAgqpkaalpdLAGCILTKLDEAS 295
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2239878801 338 KGGIVVAIARELGLPIRYVGTGEQL-DDLTVFSPEAFVDSLF 378
Cdd:PRK14722 296 NLGGVLDTVIRYKLPVHYVSTGQKVpENLYVATKKFLLKSAF 337
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
28-378 |
1.15e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 50.57 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 28 PAPADTPAPGGSPDAAPTgqPVTNLPPVAPPAGVAEPPRETFLLrmkNAVRRTRQNLVGRLDTLVRG--KKVISPEVLDE 105
Cdd:PRK14723 55 AQAYAPPAPAPLPAALVA--PAPAAASIAAPAAVPAPGAIGDLR---GELQSMRGMLERQLAGLLWAagEVAGRDPLRAS 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 106 LEEILIGADIGVRTTLDLVEKIRAQVDRKLLND--TDELKR---VLRQELLALLRAPVKSVSGravrseldiPTDIrpyv 180
Cdd:PRK14723 130 LFRWLLGAGFSGQLARALLERLPVGYDRPAAMAwiRNELAThlpVLRDEDALLAQGGVLALVG---------PTGV---- 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 181 mmvvgvngvGKTTTIAKL-AHLIKREGND-VIVCAADTFRAAAADQLTVWAERVGIPVIQQKPGTDpaavVYDALQAAKS 258
Cdd:PRK14723 197 ---------GKTTTTAKLaARCVAREGADqLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD----LRFALAALGD 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 259 RdaDVVIVDTAGRLHNKVNLMNElekmsrIARREVPQAPHEVLLVLDAATGQNGLEQ---ARQFAKTVPVTGLVLTKLDG 335
Cdd:PRK14723 264 K--HLVLIDTVGMSQRDRNVSEQ------IAMLCGVGRPVRRLLLLNAASHGDTLNEvvhAYRHGAGEDVDGCIITKLDE 335
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 2239878801 336 TAKGGIVVAIARELGLPIRYVGTGEQL-DDLTVFSPEAFVDSLF 378
Cdd:PRK14723 336 ATHLGPALDTVIRHRLPVHYVSTGQKVpEHLELAQADELVDRAF 379
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
10-270 |
3.82e-06 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 48.10 E-value: 3.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 10 EVTA----EPARRGLLSRWLGWPAPADTPAPGgSPDAAPTGQPVTNLPPVAPPAGVAEPPREtfllrmKNAVRRTRQNLV 85
Cdd:TIGR03499 45 EVTAaideEEAAAASAEEEASKALEQADPKPL-SATAEPLELPAPQEEPAAPAAQAAEPLLP------EEELRKELEALR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 86 GRLDTLVRGKKV-ISPEVLDELEEILIGADIGVRTTLDLVEKIRAQVDRKLLndTDELKRVLRQELLAL-LRAPVKSVSG 163
Cdd:TIGR03499 118 ELLERLLAGLAWlQRPPERAKLYERLLEAGVSEELARELLEKLPEDADAEDA--WRWLREALEGMLPVKpEEDPILEQGG 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 164 RAVrseLDIPTDIrpyvmmvvgvngvGKTTTIAKLA--HLIKREGNDV---------IvcaadtfraAAADQLTVWAERV 232
Cdd:TIGR03499 196 VIA---LVGPTGV-------------GKTTTLAKLAarFALEHGKKKValittdtyrI---------GAVEQLKTYAEIL 250
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2239878801 233 GIPVIqqkpgtdpaaVVYDA--LQAAKS--RDADVVIVDTAG 270
Cdd:TIGR03499 251 GIPVK----------VARDPkeLREALDrlRDKDLILIDTAG 282
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
190-308 |
1.71e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 44.29 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 190 GKTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLtvwaerVGIPVIQQKPGTDPAAVVYDALQAAKSRDADVVIVDTA 269
Cdd:smart00382 14 GKTTLARALARELGPPGGGVIYIDGEDILEEVLDQL------LLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEI 87
|
90 100 110
....*....|....*....|....*....|....*....
gi 2239878801 270 GRLHNKVNLMNELEKMSRiaRREVPQAPHEVLLVLDAAT 308
Cdd:smart00382 88 TSLLDAEQEALLLLLEEL--RLLLLLKSEKNLTVILTTN 124
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
91-377 |
5.35e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 44.89 E-value: 5.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 91 LVRGKKVISPEVLDELEEILIGADIGVRTTLDLVEKIRAQVDrklLNDTDELKRVlRQELLALLRAPVKSVSGRAVRSEL 170
Cdd:PRK12723 99 LAHKKEEINHPTILKIEDILRENDFSESYIKDINEFIKKEFS---LSDLDDYDKV-RDSVIIYIAKTIKCSGSIIDNLKK 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 171 DIPTDIRPyvmmvvgvNGVGKTTTIAKLAHLIKREGND----VIVCAADTFRAAAADQLTVWAERVGIPViqqkpgtdPA 246
Cdd:PRK12723 175 RVFILVGP--------TGVGKTTTIAKLAAIYGINSDDkslnIKIITIDNYRIGAKKQIQTYGDIMGIPV--------KA 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 247 AVVYDAL--QAAKSRDADVVIVDTAGRL-HNKVNLMNELEKMSRIARREvpqaphEVLLVLDAATGQNGLEQArqFAKTV 323
Cdd:PRK12723 239 IESFKDLkeEITQSKDFDLVLVDTIGKSpKDFMKLAEMKELLNACGRDA------EFHLAVSSTTKTSDVKEI--FHQFS 310
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2239878801 324 PV--TGLVLTKLDGTAKGGIVVAIARELGLPIRYVGTGEQL-DDLTVFSPEAFVDSL 377
Cdd:PRK12723 311 PFsyKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVpHNISIAEPLTFIKKI 367
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
191-372 |
5.70e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 44.73 E-value: 5.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQqkpGTDPAAVVYDALQAAKSRDADVVIVDTAG 270
Cdd:PRK12726 219 KTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV---ATSPAELEEAVQYMTYVNCVDHILIDTVG 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 271 RlhnkvNLMNElEKMSRIArrEVPQAPHEVLLVLDAATGQNGLEQARQFAK--TVPVTGLVLTKLDGTAKGGIVVAIARE 348
Cdd:PRK12726 296 R-----NYLAE-ESVSEIS--AYTDVVHPDLTCFTFSSGMKSADVMTILPKlaEIPIDGFIITKMDETTRIGDLYTVMQE 367
|
170 180
....*....|....*....|....
gi 2239878801 349 LGLPIRYVGTGEQLDDlTVFSPEA 372
Cdd:PRK12726 368 TNLPVLYMTDGQNITE-NIFRPKS 390
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
191-362 |
6.29e-05 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 44.35 E-value: 6.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKpgtDPAAVVYDALQAAKSRDADVVIVDTAG 270
Cdd:PRK06731 88 KTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEARVDYILIDTAG 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 271 RLHNKVNLMNEL-EKMSRIarrevpqAPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIAREL 349
Cdd:PRK06731 165 KNYRASETVEEMiETMGQV-------EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVS 237
|
170
....*....|...
gi 2239878801 350 GLPIRYVGTGEQL 362
Cdd:PRK06731 238 SAPIVLMTDGQDV 250
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
191-362 |
1.05e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 43.90 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 191 KTTTIAKLAHLIKREGNDVIVCAADTFRAAAADQLTVWAERVGIPVIQQKpgtDPAAVVYDALQAAKSRDADVVIVDTAG 270
Cdd:PRK11889 254 KTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEARVDYILIDTAG 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 271 RLHNKVNLMNEL-EKMSRIarrevpqAPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIAREL 349
Cdd:PRK11889 331 KNYRASETVEEMiETMGQV-------EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVS 403
|
170
....*....|...
gi 2239878801 350 GLPIRYVGTGEQL 362
Cdd:PRK11889 404 SAPIVLMTDGQDV 416
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
66-362 |
2.07e-04 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 43.03 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 66 RETFLLRMKNAVRRTRQNLVGRL-DTLVRGKKVIS--PEVLDELEEILIGADIGV------RTTLDLVEKIraQVDRKLL 136
Cdd:PRK12724 138 KNSFLESETTIVRKEKDSPLQRLgERLVREGMSQSyvEEMASKLEERLSPVDQGRnhnvteRAVTYLEERV--SVDSDLF 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 137 NDTDELKRVLrqellALLRAPVKSvsgravrseldiptdirpyvmmvvgvngvGKTTTIAKLA--HLIKReGNDVIVCAA 214
Cdd:PRK12724 216 SGTGKNQRKV-----VFFVGPTGS-----------------------------GKTTSIAKLAakYFLHM-GKSVSLYTT 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2239878801 215 DTFRAAAADQLTVWAERVGIPVIQQKPgtdpaavvYDALQAAKSRD-ADVVIVDTAGRLHNKvnlMNELEKMSRIARREV 293
Cdd:PRK12724 261 DNYRIAAIEQLKRYADTMGMPFYPVKD--------IKKFKETLARDgSELILIDTAGYSHRN---LEQLERMQSFYSCFG 329
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2239878801 294 PQAPHEVLLVLDAATGQNGLEQARQFAKTVPVTGLVLTKLDGTAKGGIVVAIARELGLPIRYVGTGEQL 362
Cdd:PRK12724 330 EKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEV 398
|
|
| AdSS |
cd03108 |
adenylosuccinate synthetase; Adenylosuccinate synthetase (AdSS) catalyzes the first step in ... |
325-364 |
5.70e-03 |
|
adenylosuccinate synthetase; Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-phosphate group of GTP is transferred to the 6-oxygen atom of IMP. An aspartate then displaces this 6-phosphate group to form the product adenylosuccinate. Because of its critical role in purine biosynthesis, AdSS is a target of antibiotics, herbicides and antitumor drugs.
Pssm-ID: 349762 Cd Length: 316 Bit Score: 38.25 E-value: 5.70e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 2239878801 325 VTGLVLTKLDGTAKGgIVVAIARELGLPIRYVGTGEQLDD 364
Cdd:cd03108 275 LTELALTKLDVNAQK-YIERIEELLGVPITYISVGPDREQ 313
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
3-66 |
6.61e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 38.39 E-value: 6.61e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2239878801 3 AEARPAPEVTAEPARRGLlSRWLGWPAPADTPAPGGSPDAAPtgqPVTNLPPVaPPAGVAEPPR 66
Cdd:PRK14954 394 APEPDLPQPDRHPGPAKP-EAPGARPAELPSPASAPTPEQQP---PVARSAPL-PPSPQASAPR 452
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
2-68 |
7.91e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 38.43 E-value: 7.91e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2239878801 2 PAEARPAPEVTAEPARRGLLSRWLGWPAPADTPAPGGSPDAAPTGQPVTNLPPVAPPAGVAEPPRET 68
Cdd:PRK07764 434 APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAP 500
|
|
| |
