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Conserved domains on  [gi|2248620811|ref|WP_250622910|]
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hypothetical protein [Bacillus subtilis]

Protein Classification

ABC transporter permease( domain architecture ID 1000903)

ABC transporter permease is the membrane component of an ABC-2 type transporter complex, and is predicted to form homo- or hetero-oligomeric channels, allowing ATP-mediated transport; similar to Streptococcus agalactiae ABC transporter homolog CylB

Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ABC2_membrane_3 super family cl38365
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 1-96 1.96e-04

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.


The actual alignment was detected with superfamily member pfam12698:

Pssm-ID: 463674 [Multi-domain]  Cd Length: 345  Bit Score: 39.68  E-value: 1.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2248620811   1 MLGLVFFYESMLSDKGEQYTLAV----GHSLPPALESKLNEIDEIS----VKTFAKPEEAVDEGKADAYLNVPKEFDSYV 72
Cdd:pfam12698  14 LILLLGLIFSNAVNDPEELPVAVvdedNSSLSRQLVRALEASPTVNlvqyVDSEEEAKEALKNGKIDGLLVIPKGFSKDL 93

                          90       100
                  ....*....|....*....|....
gi 2248620811  73 NSMTPFKVDVYGNSIDQGSSNAMQ 96
Cdd:pfam12698  94 LKGESATVTVYINSSNLLVSKLIL 117
 
Name Accession Description Interval E-value
ABC2_membrane_3 pfam12698
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 1-96 1.96e-04

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.


Pssm-ID: 463674 [Multi-domain]  Cd Length: 345  Bit Score: 39.68  E-value: 1.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2248620811   1 MLGLVFFYESMLSDKGEQYTLAV----GHSLPPALESKLNEIDEIS----VKTFAKPEEAVDEGKADAYLNVPKEFDSYV 72
Cdd:pfam12698  14 LILLLGLIFSNAVNDPEELPVAVvdedNSSLSRQLVRALEASPTVNlvqyVDSEEEAKEALKNGKIDGLLVIPKGFSKDL 93

                          90       100
                  ....*....|....*....|....
gi 2248620811  73 NSMTPFKVDVYGNSIDQGSSNAMQ 96
Cdd:pfam12698  94 LKGESATVTVYINSSNLLVSKLIL 117
 
Name Accession Description Interval E-value
ABC2_membrane_3 pfam12698
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 1-96 1.96e-04

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.


Pssm-ID: 463674 [Multi-domain]  Cd Length: 345  Bit Score: 39.68  E-value: 1.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2248620811   1 MLGLVFFYESMLSDKGEQYTLAV----GHSLPPALESKLNEIDEIS----VKTFAKPEEAVDEGKADAYLNVPKEFDSYV 72
Cdd:pfam12698  14 LILLLGLIFSNAVNDPEELPVAVvdedNSSLSRQLVRALEASPTVNlvqyVDSEEEAKEALKNGKIDGLLVIPKGFSKDL 93

                          90       100
                  ....*....|....*....|....
gi 2248620811  73 NSMTPFKVDVYGNSIDQGSSNAMQ 96
Cdd:pfam12698  94 LKGESATVTVYINSSNLLVSKLIL 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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