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Conserved domains on  [gi|2253220043|ref|WP_251188584|]
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transposase, partial [Bacillus subtilis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS1182 super family cl41317
IS1182 family transposase; Members of this family are transposases of the IS1182 family. ...
 2-71 8.00e-28

IS1182 family transposase; Members of this family are transposases of the IS1182 family. About two-thirds of the members of this family have an extra domain between the middle and the C-terminal domain, about 50 amino acids in size and containing four invariant Cys residues.


The actual alignment was detected with superfamily member NF033551:

Pssm-ID: 468080 [Multi-domain]  Cd Length: 437  Bit Score: 102.79  E-value: 8.00e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2253220043   2 LDQLVEEDHLLRKIDQYIDFSFIIEKVKPYYSENKGRPSLDPLILFKMMFIGYLYGIRSERQLEKEIYYN 71
Cdd:NF033551   14 LDDLVPEDHLLRFIDAVVDFLDLSELFADLYCSDNGRPAYHPALMLKLLLYGYLEGIRSDRQLERELREN 83
 
Name Accession Description Interval E-value
transpos_IS1182 NF033551
IS1182 family transposase; Members of this family are transposases of the IS1182 family. ...
 2-71 8.00e-28

IS1182 family transposase; Members of this family are transposases of the IS1182 family. About two-thirds of the members of this family have an extra domain between the middle and the C-terminal domain, about 50 amino acids in size and containing four invariant Cys residues.


Pssm-ID: 468080 [Multi-domain]  Cd Length: 437  Bit Score: 102.79  E-value: 8.00e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2253220043   2 LDQLVEEDHLLRKIDQYIDFSFIIEKVKPYYSENKGRPSLDPLILFKMMFIGYLYGIRSERQLEKEIYYN 71
Cdd:NF033551   14 LDDLVPEDHLLRFIDAVVDFLDLSELFADLYCSDNGRPAYHPALMLKLLLYGYLEGIRSDRQLERELREN 83
COG3666 COG3666
Transposase, IS1182 family [Mobilome: prophages, transposons];
2-71 1.32e-26

Transposase, IS1182 family [Mobilome: prophages, transposons];


Pssm-ID: 442883 [Multi-domain]  Cd Length: 169  Bit Score: 94.57  E-value: 1.32e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2253220043   2 LDQLVEEDHLLRKIDQYID-FSFIIEKVKPYYSENKGRPSLDPLILFKMMFIGYLYGIRSERQLEKEIYYN 71
Cdd:COG3666    19 LEDLVPEDHPLRAIDALVDeLDFILSELEKLYSADTGRPAYDPEMLLKLLLYGYLEGIRSSRQLEEACRYN 89
DUF772 pfam05598
Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins ...
 37-71 1.25e-11

Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins found in transposons.


Pssm-ID: 461687 [Multi-domain]  Cd Length: 71  Bit Score: 54.03  E-value: 1.25e-11
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 2253220043 37 GRPSLDPLILFKMMFIGYLYGIRSERQLEKEIYYN 71
Cdd:pfam05598  1 GRPAYPPEMMLKALLLQYLYGLRSDRQLEEALRDN 35
 
Name Accession Description Interval E-value
transpos_IS1182 NF033551
IS1182 family transposase; Members of this family are transposases of the IS1182 family. ...
 2-71 8.00e-28

IS1182 family transposase; Members of this family are transposases of the IS1182 family. About two-thirds of the members of this family have an extra domain between the middle and the C-terminal domain, about 50 amino acids in size and containing four invariant Cys residues.


Pssm-ID: 468080 [Multi-domain]  Cd Length: 437  Bit Score: 102.79  E-value: 8.00e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2253220043   2 LDQLVEEDHLLRKIDQYIDFSFIIEKVKPYYSENKGRPSLDPLILFKMMFIGYLYGIRSERQLEKEIYYN 71
Cdd:NF033551   14 LDDLVPEDHLLRFIDAVVDFLDLSELFADLYCSDNGRPAYHPALMLKLLLYGYLEGIRSDRQLERELREN 83
COG3666 COG3666
Transposase, IS1182 family [Mobilome: prophages, transposons];
2-71 1.32e-26

Transposase, IS1182 family [Mobilome: prophages, transposons];


Pssm-ID: 442883 [Multi-domain]  Cd Length: 169  Bit Score: 94.57  E-value: 1.32e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2253220043   2 LDQLVEEDHLLRKIDQYID-FSFIIEKVKPYYSENKGRPSLDPLILFKMMFIGYLYGIRSERQLEKEIYYN 71
Cdd:COG3666    19 LEDLVPEDHPLRAIDALVDeLDFILSELEKLYSADTGRPAYDPEMLLKLLLYGYLEGIRSSRQLEEACRYN 89
DUF772 pfam05598
Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins ...
 37-71 1.25e-11

Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins found in transposons.


Pssm-ID: 461687 [Multi-domain]  Cd Length: 71  Bit Score: 54.03  E-value: 1.25e-11
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 2253220043 37 GRPSLDPLILFKMMFIGYLYGIRSERQLEKEIYYN 71
Cdd:pfam05598  1 GRPAYPPEMMLKALLLQYLYGLRSDRQLEEALRDN 35
IS5 COG3039
Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];
12-69 3.95e-07

Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];


Pssm-ID: 442273 [Multi-domain]  Cd Length: 316  Bit Score: 44.86  E-value: 3.95e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2253220043  12 LRKIDQYIDFSFIIEKV---KPYYSENK-GRPSLDPLILFKMMFIGYLYGIrSERQLEKEIY 69
Cdd:COG3039    22 LLFLEEMIDVVPWALLLdiiEPRYPKGKgGRPPYPLERMLRILFLQQWYNL-SDPAMEDALY 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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