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Conserved domains on  [gi|2269886337|ref|WP_254104674|]
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MULTISPECIES: transporter [Staphylococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YcnI super family cl44084
Uncharacterized conserved protein YcnI, contains cohesin/reeler-like domain [Function unknown]; ...
 2-51 2.37e-10

Uncharacterized conserved protein YcnI, contains cohesin/reeler-like domain [Function unknown];


The actual alignment was detected with superfamily member COG4549:

Pssm-ID: 443613  Cd Length: 179  Bit Score: 53.80  E-value: 2.37e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2269886337   2 EFPIVVANPKKEGTFKWNATQTYDNGDVVKWT-----GKEDSAHPTPTTTVKKGA 51
Cdd:COG4549   122 EFVLSAGLPDDGTTLYFPAVQTCSDGEVVRWIeipaaGQDEPEHPAPVLTLTAAA 176
 
Name Accession Description Interval E-value
YcnI COG4549
Uncharacterized conserved protein YcnI, contains cohesin/reeler-like domain [Function unknown]; ...
 2-51 2.37e-10

Uncharacterized conserved protein YcnI, contains cohesin/reeler-like domain [Function unknown];


Pssm-ID: 443613  Cd Length: 179  Bit Score: 53.80  E-value: 2.37e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2269886337   2 EFPIVVANPKKEGTFKWNATQTYDNGDVVKWT-----GKEDSAHPTPTTTVKKGA 51
Cdd:COG4549   122 EFVLSAGLPDDGTTLYFPAVQTCSDGEVVRWIeipaaGQDEPEHPAPVLTLTAAA 176
YcnI_like cd08545
Reeler-like domain of YcnI and similar proteins; YcnI is a copper-responsive gene of Bacillus ...
 2-51 4.86e-09

Reeler-like domain of YcnI and similar proteins; YcnI is a copper-responsive gene of Bacillus subtilis. It is homologous to an uncharacterized protein from Nocardia farcinica, which shares a conserved three-dimensional structure with cohesins and the reeler domain. Some members in this YcnI_like family have C-terminal domains (DUF461) that may bind copper.


Pssm-ID: 260082  Cd Length: 152  Bit Score: 49.99  E-value: 4.86e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2269886337   2 EFPIVVANPKKEG-TFKWNATQTYDNGDVVKWTGK-----EDSAHPTPTTTVKKGA 51
Cdd:cd08545    97 EFVLSAKLPPDPGgTLYFPAVQTCSDGGVVRWTEVpaadgHELEHPAPVLTLTAAA 152
DUF1775 pfam07987
Domain of unkown function (DUF1775); Domain found in bacteria with undetermined function. Its ...
 2-47 1.89e-04

Domain of unkown function (DUF1775); Domain found in bacteria with undetermined function. Its structure has been determined and is an immunoglobulin-like fold.


Pssm-ID: 429772  Cd Length: 146  Bit Score: 37.60  E-value: 1.89e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2269886337   2 EFPIVVANPKKEGT---FKwnATQTYDNGDVVKWT-----GKEDSAHPTPTTTV 47
Cdd:pfam07987  95 EFVVSAPLPDDAGDtlyFP--VLQTCSDGEVVRWIeipaqGGHEPEHPAPVLKL 146
 
Name Accession Description Interval E-value
YcnI COG4549
Uncharacterized conserved protein YcnI, contains cohesin/reeler-like domain [Function unknown]; ...
 2-51 2.37e-10

Uncharacterized conserved protein YcnI, contains cohesin/reeler-like domain [Function unknown];


Pssm-ID: 443613  Cd Length: 179  Bit Score: 53.80  E-value: 2.37e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2269886337   2 EFPIVVANPKKEGTFKWNATQTYDNGDVVKWT-----GKEDSAHPTPTTTVKKGA 51
Cdd:COG4549   122 EFVLSAGLPDDGTTLYFPAVQTCSDGEVVRWIeipaaGQDEPEHPAPVLTLTAAA 176
YcnI_like cd08545
Reeler-like domain of YcnI and similar proteins; YcnI is a copper-responsive gene of Bacillus ...
 2-51 4.86e-09

Reeler-like domain of YcnI and similar proteins; YcnI is a copper-responsive gene of Bacillus subtilis. It is homologous to an uncharacterized protein from Nocardia farcinica, which shares a conserved three-dimensional structure with cohesins and the reeler domain. Some members in this YcnI_like family have C-terminal domains (DUF461) that may bind copper.


Pssm-ID: 260082  Cd Length: 152  Bit Score: 49.99  E-value: 4.86e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2269886337   2 EFPIVVANPKKEG-TFKWNATQTYDNGDVVKWTGK-----EDSAHPTPTTTVKKGA 51
Cdd:cd08545    97 EFVLSAKLPPDPGgTLYFPAVQTCSDGGVVRWTEVpaadgHELEHPAPVLTLTAAA 152
DUF1775 pfam07987
Domain of unkown function (DUF1775); Domain found in bacteria with undetermined function. Its ...
 2-47 1.89e-04

Domain of unkown function (DUF1775); Domain found in bacteria with undetermined function. Its structure has been determined and is an immunoglobulin-like fold.


Pssm-ID: 429772  Cd Length: 146  Bit Score: 37.60  E-value: 1.89e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2269886337   2 EFPIVVANPKKEGT---FKwnATQTYDNGDVVKWT-----GKEDSAHPTPTTTV 47
Cdd:pfam07987  95 EFVVSAPLPDDAGDtlyFP--VLQTCSDGEVVRWIeipaqGGHEPEHPAPVLKL 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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