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Conserved domains on  [gi|2273508922|ref|WP_254779432|]
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MULTISPECIES: septum formation family protein [Micrococcaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Septum_form super family cl16434
Septum formation; This domain is found in a protein which is predicted to play a role in ...
 108-197 7.05e-05

Septum formation; This domain is found in a protein which is predicted to play a role in septum formation during cell division.


The actual alignment was detected with superfamily member pfam13845:

Pssm-ID: 433522  Cd Length: 227  Bit Score: 42.35  E-value: 7.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2273508922 108 GDC-FADFDPNASEARAVACDTEHSAQ---LIGVHVYPG-----EDSFPGTNALRDKGREVCKASVAK-LN---DAAGNY 174
Cdd:pfam13845   2 GDClTWDATPDASDYEPVDCAEPHRFEvvaREDLGTYPGsefgpGAPPPDGSRWAQLAEELCEQATAEyLGgrlDPAGRF 81

                          90       100
                  ....*....|....*....|...
gi 2273508922 175 VLlqQNVYPSTTSWDRGDRRVDC 197
Cdd:pfam13845  82 SV--GVLLPSEAAWAAGDRTLRC 102
YppG super family cl16686
YppG-like protein; The YppG-like protein family includes the B. subtilis YppG protein, which ...
 2-39 6.12e-03

YppG-like protein; The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important.


The actual alignment was detected with superfamily member pfam14179:

Pssm-ID: 372950 [Multi-domain]  Cd Length: 101  Bit Score: 35.17  E-value: 6.12e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2273508922   2 PPSDGQSPTYASAYPGQQPHPGQQPYPGQQPYPGQEPQ 39
Cdd:pfam14179  19 PVQPQYPPFAPQQYMPQPPMPYMNPYPKQQPQQQQPSQ 56
 
Name Accession Description Interval E-value
Septum_form pfam13845
Septum formation; This domain is found in a protein which is predicted to play a role in ...
 108-197 7.05e-05

Septum formation; This domain is found in a protein which is predicted to play a role in septum formation during cell division.


Pssm-ID: 433522  Cd Length: 227  Bit Score: 42.35  E-value: 7.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2273508922 108 GDC-FADFDPNASEARAVACDTEHSAQ---LIGVHVYPG-----EDSFPGTNALRDKGREVCKASVAK-LN---DAAGNY 174
Cdd:pfam13845   2 GDClTWDATPDASDYEPVDCAEPHRFEvvaREDLGTYPGsefgpGAPPPDGSRWAQLAEELCEQATAEyLGgrlDPAGRF 81

                          90       100
                  ....*....|....*....|...
gi 2273508922 175 VLlqQNVYPSTTSWDRGDRRVDC 197
Cdd:pfam13845  82 SV--GVLLPSEAAWAAGDRTLRC 102
YppG pfam14179
YppG-like protein; The YppG-like protein family includes the B. subtilis YppG protein, which ...
 2-39 6.12e-03

YppG-like protein; The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important.


Pssm-ID: 372950 [Multi-domain]  Cd Length: 101  Bit Score: 35.17  E-value: 6.12e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2273508922   2 PPSDGQSPTYASAYPGQQPHPGQQPYPGQQPYPGQEPQ 39
Cdd:pfam14179  19 PVQPQYPPFAPQQYMPQPPMPYMNPYPKQQPQQQQPSQ 56
 
Name Accession Description Interval E-value
Septum_form pfam13845
Septum formation; This domain is found in a protein which is predicted to play a role in ...
 108-197 7.05e-05

Septum formation; This domain is found in a protein which is predicted to play a role in septum formation during cell division.


Pssm-ID: 433522  Cd Length: 227  Bit Score: 42.35  E-value: 7.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2273508922 108 GDC-FADFDPNASEARAVACDTEHSAQ---LIGVHVYPG-----EDSFPGTNALRDKGREVCKASVAK-LN---DAAGNY 174
Cdd:pfam13845   2 GDClTWDATPDASDYEPVDCAEPHRFEvvaREDLGTYPGsefgpGAPPPDGSRWAQLAEELCEQATAEyLGgrlDPAGRF 81

                          90       100
                  ....*....|....*....|...
gi 2273508922 175 VLlqQNVYPSTTSWDRGDRRVDC 197
Cdd:pfam13845  82 SV--GVLLPSEAAWAAGDRTLRC 102
Septum_form pfam13845
Septum formation; This domain is found in a protein which is predicted to play a role in ...
 102-197 3.07e-04

Septum formation; This domain is found in a protein which is predicted to play a role in septum formation during cell division.


Pssm-ID: 433522  Cd Length: 227  Bit Score: 40.42  E-value: 3.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2273508922 102 SKDFQVGDCF-ADFDPNASEARAVACDTEHSAQLIGVHVYP--GEDSFPGTNALRDKGREVCKASVAKlndaagnYVLLQ 178
Cdd:pfam13845 126 SRVWLPGTCLgIDLDGAVPVMDPVDCAEPHAAEVVGVVDLPdrFPGAYPSLEDQDDFLDDACTRAAAD-------YLGGP 198

                          90       100
                  ....*....|....*....|....*....
gi 2273508922 179 QNVYPST----------TSWDRGDRRVDC 197
Cdd:pfam13845 199 DDLRYRTltvfwdtlsaESWLAGSRGVNC 227
YppG pfam14179
YppG-like protein; The YppG-like protein family includes the B. subtilis YppG protein, which ...
 2-39 6.12e-03

YppG-like protein; The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important.


Pssm-ID: 372950 [Multi-domain]  Cd Length: 101  Bit Score: 35.17  E-value: 6.12e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2273508922   2 PPSDGQSPTYASAYPGQQPHPGQQPYPGQQPYPGQEPQ 39
Cdd:pfam14179  19 PVQPQYPPFAPQQYMPQPPMPYMNPYPKQQPQQQQPSQ 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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