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Conserved domains on  [gi|2278758678|ref|WP_255646348|]
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MULTISPECIES: DNA topoisomerase, partial [unclassified Longicatena]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK07726 super family cl35606
DNA topoisomerase 3;
7-76 2.18e-17

DNA topoisomerase 3;


The actual alignment was detected with superfamily member PRK07726:

Pssm-ID: 236078 [Multi-domain]  Cd Length: 658  Bit Score: 74.43  E-value: 2.18e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2278758678   7 ADLSALPAGEKAVLELVALRLLCAVAQPHIYSETVVIAACAGGEFTAKGKTVKHPGWKALedaYRAKTKD 76
Cdd:PRK07726  381 PNLSKLSEDERKVYDLIARRYLAQFLPPAEYDKTTIELEIAGGTFIAKGKQVVEAGWKAL---LGKKEED 447
 
Name Accession Description Interval E-value
PRK07726 PRK07726
DNA topoisomerase 3;
7-76 2.18e-17

DNA topoisomerase 3;


Pssm-ID: 236078 [Multi-domain]  Cd Length: 658  Bit Score: 74.43  E-value: 2.18e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2278758678   7 ADLSALPAGEKAVLELVALRLLCAVAQPHIYSETVVIAACAGGEFTAKGKTVKHPGWKALedaYRAKTKD 76
Cdd:PRK07726  381 PNLSKLSEDERKVYDLIARRYLAQFLPPAEYDKTTIELEIAGGTFIAKGKQVVEAGWKAL---LGKKEED 447
 
Name Accession Description Interval E-value
PRK07726 PRK07726
DNA topoisomerase 3;
7-76 2.18e-17

DNA topoisomerase 3;


Pssm-ID: 236078 [Multi-domain]  Cd Length: 658  Bit Score: 74.43  E-value: 2.18e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2278758678   7 ADLSALPAGEKAVLELVALRLLCAVAQPHIYSETVVIAACAGGEFTAKGKTVKHPGWKALedaYRAKTKD 76
Cdd:PRK07726  381 PNLSKLSEDERKVYDLIARRYLAQFLPPAEYDKTTIELEIAGGTFIAKGKQVVEAGWKAL---LGKKEED 447
PRK07220 PRK07220
DNA topoisomerase I; Validated
 7-65 6.03e-03

DNA topoisomerase I; Validated


Pssm-ID: 180892 [Multi-domain]  Cd Length: 740  Bit Score: 33.58  E-value: 6.03e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2278758678   7 ADLSALPAGEKAVLELVALRLLCAVAQPHIYSETVVIAACAGGEFTAKGKTVKHPGWKA 65
Cdd:PRK07220  372 AKKSELKEDEWKVYELVVRRFFATFAGPAEWETMKLRFDIGGEEFRANGSRLTEPGWRW 430
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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