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Conserved domains on  [gi|2288929022|ref|WP_258285697|]
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hypothetical protein [Fibrobacter succinogenes]

Protein Classification

collagen-like domain-containing protein( domain architecture ID 1903237)

collagen-like domain-containing protein such as collagens, which are extracellular structural proteins involved in formation of connective tissue structure

PubMed:  21421911|15837519

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 111-210 1.71e-04

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 45.67  E-value: 1.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2288929022  111 GKDGTNGTNGTNGKDGKDGTNGTNGTNGTNGKDGVDGTNGTSGTNGSSGTNGKsayeiakdNGFTGTE-KEWLESLKGAD 189
Cdd:NF038329   242 GPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGK--------DGLPGKDgKDGQNGKDGLP 313

                           90       100
                   ....*....|....*....|.
gi 2288929022  190 GKNGTNGTNGKDADMDKIQKD 210
Cdd:NF038329   314 GKDGKDGQPGKDGLPGKDGKD 334
 
Name Accession Description Interval E-value
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 111-210 1.71e-04

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 45.67  E-value: 1.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2288929022  111 GKDGTNGTNGTNGKDGKDGTNGTNGTNGTNGKDGVDGTNGTSGTNGSSGTNGKsayeiakdNGFTGTE-KEWLESLKGAD 189
Cdd:NF038329   242 GPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGK--------DGLPGKDgKDGQNGKDGLP 313

                           90       100
                   ....*....|....*....|.
gi 2288929022  190 GKNGTNGTNGKDADMDKIQKD 210
Cdd:NF038329   314 GKDGKDGQPGKDGLPGKDGKD 334
 
Name Accession Description Interval E-value
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 111-210 1.71e-04

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 45.67  E-value: 1.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2288929022  111 GKDGTNGTNGTNGKDGKDGTNGTNGTNGTNGKDGVDGTNGTSGTNGSSGTNGKsayeiakdNGFTGTE-KEWLESLKGAD 189
Cdd:NF038329   242 GPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGK--------DGLPGKDgKDGQNGKDGLP 313

                           90       100
                   ....*....|....*....|.
gi 2288929022  190 GKNGTNGTNGKDADMDKIQKD 210
Cdd:NF038329   314 GKDGKDGQPGKDGLPGKDGKD 334
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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