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Conserved domains on  [gi|2290030370|ref|WP_258431671|]
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ArpU family phage packaging/lysis transcriptional regulator [Lentilactobacillus buchneri]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
phage_arpU super family cl11765
phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, ...
 8-143 2.15e-18

phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]


The actual alignment was detected with superfamily member TIGR01637:

Pssm-ID: 273725  Cd Length: 132  Bit Score: 76.28  E-value: 2.15e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290030370   8 LFPQIDKDKTVENCKHFLGSvFPRMLRISGLTsanydamIADLKSPTMDGMPKSPTTL--NNADTTIVRRAYAQQIVKRT 85
Cdd:TIGR01637   1 LFPEIDEKKTRANVKRFLED-YRRLRRIAGRS-------LTPKLSPSLSLEPPSFTNEfhSKTEEAAIHNLDAEQEARAI 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2290030370  86 VEAIG-RCNNVGKELLSMRYLDNY--TDTMCYMSIGYSRSHYFDhIKPGALLQFADAYLLD 143
Cdd:TIGR01637  73 VNAIVnQLDEISRQILYDKYLEPDqkYDYQIMMELGYSHRQYYR-IKKRALLRFATLYGIG 132
 
Name Accession Description Interval E-value
phage_arpU TIGR01637
phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, ...
 8-143 2.15e-18

phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]


Pssm-ID: 273725  Cd Length: 132  Bit Score: 76.28  E-value: 2.15e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290030370   8 LFPQIDKDKTVENCKHFLGSvFPRMLRISGLTsanydamIADLKSPTMDGMPKSPTTL--NNADTTIVRRAYAQQIVKRT 85
Cdd:TIGR01637   1 LFPEIDEKKTRANVKRFLED-YRRLRRIAGRS-------LTPKLSPSLSLEPPSFTNEfhSKTEEAAIHNLDAEQEARAI 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2290030370  86 VEAIG-RCNNVGKELLSMRYLDNY--TDTMCYMSIGYSRSHYFDhIKPGALLQFADAYLLD 143
Cdd:TIGR01637  73 VNAIVnQLDEISRQILYDKYLEPDqkYDYQIMMELGYSHRQYYR-IKKRALLRFATLYGIG 132
 
Name Accession Description Interval E-value
phage_arpU TIGR01637
phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, ...
 8-143 2.15e-18

phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]


Pssm-ID: 273725  Cd Length: 132  Bit Score: 76.28  E-value: 2.15e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290030370   8 LFPQIDKDKTVENCKHFLGSvFPRMLRISGLTsanydamIADLKSPTMDGMPKSPTTL--NNADTTIVRRAYAQQIVKRT 85
Cdd:TIGR01637   1 LFPEIDEKKTRANVKRFLED-YRRLRRIAGRS-------LTPKLSPSLSLEPPSFTNEfhSKTEEAAIHNLDAEQEARAI 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2290030370  86 VEAIG-RCNNVGKELLSMRYLDNY--TDTMCYMSIGYSRSHYFDhIKPGALLQFADAYLLD 143
Cdd:TIGR01637  73 VNAIVnQLDEISRQILYDKYLEPDqkYDYQIMMELGYSHRQYYR-IKKRALLRFATLYGIG 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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