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Concise Results
Standard Results
Full Results
lysine decarboxylase CadA [Serratia sp. AKBS12]
Protein Classification
lysine decarboxylase CadA ( domain architecture ID 11487771 )
lysine decarboxylase CadA catalyzes the conversion from L-lysine to cadaverine; plays a role in pH homeostasis by consuming protons and neutralizing the acidic by-products of carbohydrate fermentation
List of domain hits
Name
Accession
Description
Interval
E-value
PRK15400
PRK15400 lysine decarboxylase;
1-713
0e+00
lysine decarboxylase;
Pssm-ID: 185298 [Multi-domain]
Cd Length: 714
Bit Score: 1525.16
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 1 MNVIAI M NHMGVYFKEEPIRELH Q ALE G L D F R IVYPNDR E DLLKLIENNARLCGVIFDWDKYNLELCEEIS QL NE YM PLY 80
Cdd:PRK15400 1 MNVIAI L NHMGVYFKEEPIRELH R ALE R L N F Q IVYPNDR D DLLKLIENNARLCGVIFDWDKYNLELCEEIS KM NE NL PLY 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 81 AFANTYSTLDVSLNDLR M QV R FFEYALGAA Q DIA A KIKQ N TDEYIDTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQK 160
Cdd:PRK15400 81 AFANTYSTLDVSLNDLR L QV S FFEYALGAA D DIA N KIKQ T TDEYIDTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQK 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 161 SPVGSLFYDFFG A NTMKSD V SISVSELGSLLDHSGPHKEAEEYI S RVFNA E RSYMVTNGTSTANKIVGMYSAPAGSTVLI 240
Cdd:PRK15400 161 SPVGSLFYDFFG P NTMKSD I SISVSELGSLLDHSGPHKEAEEYI A RVFNA D RSYMVTNGTSTANKIVGMYSAPAGSTVLI 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 241 DRNCHKSLTHLMMMSD I TPIYFRPTRNAYGILGGIPQSEF SR ATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIK N 320
Cdd:PRK15400 241 DRNCHKSLTHLMMMSD V TPIYFRPTRNAYGILGGIPQSEF QH ATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIK K 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 321 TLDVKSIHFDSAWVPYTNF H PIY K GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD I NEETFNEAYMMHTTTS 400
Cdd:PRK15400 321 TLDVKSIHFDSAWVPYTNF S PIY E GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD V NEETFNEAYMMHTTTS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 401 PHYGIVASTETAAAMMKGNAGKRLINGSIERAI R FRKEIKRL NV ESDGWFFDVWQP E HID EP ECW S LRSDS A WHGFKNID 480
Cdd:PRK15400 401 PHYGIVASTETAAAMMKGNAGKRLINGSIERAI K FRKEIKRL RT ESDGWFFDVWQP D HID TT ECW P LRSDS T WHGFKNID 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 481 NEHMYLDPIKVT I LTPGM S K E GTM QS FGIPASIVAKYLDE R GI I VEKTGPYNLLFLFSIGIDKTKALSLLRA M TDFKR S F 560
Cdd:PRK15400 481 NEHMYLDPIKVT L LTPGM K K D GTM SD FGIPASIVAKYLDE H GI V VEKTGPYNLLFLFSIGIDKTKALSLLRA L TDFKR A F 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 561 DLNLRVKNMLPSLY Q E A PEFYENMRIQ D LA R NIH Q L VEQ HNLPDLMYRAFEVLPTMVM N PY Q AFQKELHG EV EEVYL ED M 640
Cdd:PRK15400 561 DLNLRVKNMLPSLY R E D PEFYENMRIQ E LA Q NIH K L IVH HNLPDLMYRAFEVLPTMVM T PY A AFQKELHG MT EEVYL DE M 640
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2293748506 641 VG K VNANMILPYPPGVPLVMPGEM L TEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVLK NDK 713
Cdd:PRK15400 641 VG R VNANMILPYPPGVPLVMPGEM I TEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVLK EES 713
Name
Accession
Description
Interval
E-value
PRK15400
PRK15400 lysine decarboxylase;
1-713
0e+00
lysine decarboxylase;
Pssm-ID: 185298 [Multi-domain]
Cd Length: 714
Bit Score: 1525.16
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 1 MNVIAI M NHMGVYFKEEPIRELH Q ALE G L D F R IVYPNDR E DLLKLIENNARLCGVIFDWDKYNLELCEEIS QL NE YM PLY 80
Cdd:PRK15400 1 MNVIAI L NHMGVYFKEEPIRELH R ALE R L N F Q IVYPNDR D DLLKLIENNARLCGVIFDWDKYNLELCEEIS KM NE NL PLY 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 81 AFANTYSTLDVSLNDLR M QV R FFEYALGAA Q DIA A KIKQ N TDEYIDTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQK 160
Cdd:PRK15400 81 AFANTYSTLDVSLNDLR L QV S FFEYALGAA D DIA N KIKQ T TDEYIDTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQK 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 161 SPVGSLFYDFFG A NTMKSD V SISVSELGSLLDHSGPHKEAEEYI S RVFNA E RSYMVTNGTSTANKIVGMYSAPAGSTVLI 240
Cdd:PRK15400 161 SPVGSLFYDFFG P NTMKSD I SISVSELGSLLDHSGPHKEAEEYI A RVFNA D RSYMVTNGTSTANKIVGMYSAPAGSTVLI 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 241 DRNCHKSLTHLMMMSD I TPIYFRPTRNAYGILGGIPQSEF SR ATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIK N 320
Cdd:PRK15400 241 DRNCHKSLTHLMMMSD V TPIYFRPTRNAYGILGGIPQSEF QH ATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIK K 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 321 TLDVKSIHFDSAWVPYTNF H PIY K GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD I NEETFNEAYMMHTTTS 400
Cdd:PRK15400 321 TLDVKSIHFDSAWVPYTNF S PIY E GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD V NEETFNEAYMMHTTTS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 401 PHYGIVASTETAAAMMKGNAGKRLINGSIERAI R FRKEIKRL NV ESDGWFFDVWQP E HID EP ECW S LRSDS A WHGFKNID 480
Cdd:PRK15400 401 PHYGIVASTETAAAMMKGNAGKRLINGSIERAI K FRKEIKRL RT ESDGWFFDVWQP D HID TT ECW P LRSDS T WHGFKNID 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 481 NEHMYLDPIKVT I LTPGM S K E GTM QS FGIPASIVAKYLDE R GI I VEKTGPYNLLFLFSIGIDKTKALSLLRA M TDFKR S F 560
Cdd:PRK15400 481 NEHMYLDPIKVT L LTPGM K K D GTM SD FGIPASIVAKYLDE H GI V VEKTGPYNLLFLFSIGIDKTKALSLLRA L TDFKR A F 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 561 DLNLRVKNMLPSLY Q E A PEFYENMRIQ D LA R NIH Q L VEQ HNLPDLMYRAFEVLPTMVM N PY Q AFQKELHG EV EEVYL ED M 640
Cdd:PRK15400 561 DLNLRVKNMLPSLY R E D PEFYENMRIQ E LA Q NIH K L IVH HNLPDLMYRAFEVLPTMVM T PY A AFQKELHG MT EEVYL DE M 640
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2293748506 641 VG K VNANMILPYPPGVPLVMPGEM L TEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVLK NDK 713
Cdd:PRK15400 641 VG R VNANMILPYPPGVPLVMPGEM I TEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVLK EES 713
OKR_DC_1
pfam01276 Orn/Lys/Arg decarboxylase, major domain;
130-545
0e+00
Orn/Lys/Arg decarboxylase, major domain;
Pssm-ID: 396025 [Multi-domain]
Cd Length: 417
Bit Score: 697.33
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 130 PPL T KALFKYVR E G K YTF CT PGH M GG TA FQK S P V G SL FYDFFG A N TMKS DV S I SVS ELG S LLDH S G PH KEA EE Y IS RVF N 209
Cdd:pfam01276 1 PPL Y KALFKYVR R G N YTF HC PGH Q GG AG FQK H P A G RF FYDFFG E N LLRI DV C I EDV ELG D LLDH E G AI KEA QK Y AA RVF G 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 210 A ER SY M V T NGTS TA NK I VGM YSAPA G S T V LIDRNCHKS LT H LM M M S DI TP I Y FR P T RNAYGI L GGIP QS EF SRA T IAKRV 289
Cdd:pfam01276 81 A DK SY F V V NGTS GS NK T VGM AVCTP G D T I LIDRNCHKS IH H AL M L S GA TP V Y LE P S RNAYGI I GGIP LH EF QEE T LKEAI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 290 K E T P N A TW P VH AVITN S TYDG L LYN TDF I KN TL DVK S -- I H FDSAWV P Y TN F H PIY KGKCG M S G GRVE G KV I YE TQS T HK 367
Cdd:pfam01276 161 A E V P D A KG P RL AVITN P TYDG V LYN AKE I VD TL HHL S dp I L FDSAWV G Y EQ F I PIY ADASP M G G ENEN G PG I FV TQS V HK 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 368 LLAA F SQAS M IH V K GD -- I N EET FNEA Y MMH T TTSP H Y G I V AS TET AA A M MK GN A G K RL I N GSI ERAI R FRK E I KR LN ve 445
Cdd:pfam01276 241 LLAA L SQAS Y IH K K EG hi V N HDR FNEA F MMH A TTSP S Y P I F AS LDV AA K M LE GN S G R RL W N ECV ERAI E FRK A I DT LN -- 318
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 446 s DGW FF DV W Q PE HI D EP ECW SLRSDSA WHGF KNIDNEHMY LDP I K V TILTPGM SKE G TMQS FG I PA S IVAK Y L D E R GI IV 525
Cdd:pfam01276 319 - NCE FF RP W N PE IV D GK ECW PFHPGET WHGF EGYADNQYF LDP C K L TILTPGM DED G EYSE FG V PA T IVAK W L R E N GI VP 397
410 420
....*....|....*....|
gi 2293748506 526 EKT GPY N L LFLF SI G I D K TK 545
Cdd:pfam01276 398 EKT DLN N I LFLF TP G E D R TK 417
LdcC
COG1982 Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
124-711
0e+00
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
Pssm-ID: 441585 [Multi-domain]
Cd Length: 486
Bit Score: 579.37
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 124 Y I D TI L P PL TK AL F KY VRE G KYT F CT PGH M GG TA F qkspv G SL FYDFFG A N TMKS D VSI s VSE L GS L L D HS G PH KEA E E Y 203
Cdd:COG1982 1 Y M D QL L T PL FD AL K KY AER G PVS F HV PGH K GG RG F ----- G RE FYDFFG E N VFRL D LTE - LPG L DD L H D PE G VI KEA Q E L 74
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 204 ISRV F N A E R SYMVT NGTS TA NK IVGMYSAPA G ST VL ID RNCHKS LT H LMMM S DIT P I Y FR P T - R N AY GI L GGI PQSEFSR 282
Cdd:COG1982 75 AAEA F G A D R TFFLV NGTS SG NK AMILAVCGP G DK VL VP RNCHKS VI H GLIL S GAI P V Y LN P E i D N EL GI I GGI TPEAVEE 154
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 283 A tiakr VK E T P N A twp VHAV ITN S TY D G LL Y NTDF I KNTLD -- VKSIHF D S A WVPYTN FHP IYK g KCG M SG G rvegk VIY 360
Cdd:COG1982 155 A ----- LI E H P D A --- KAVL ITN P TY Y G VC Y DLKA I AELAH eh GIPVLV D E A HGAHFG FHP DLP - RSA M EA G ----- ADL 220
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 361 ET QSTHK L L A A FS Q A SM I HVKG D - INE E TF NEA Y M MHTT TSP H Y GIV AS TET A AAM M K G N a G KR L INGSI E R AI RF RKEI 439
Cdd:COG1982 221 VV QSTHK T L G A LT Q S SM L HVKG G r VDH E RV NEA L M LLQS TSP S Y LLM AS LDV A RRQ M A G E - G EE L LDEAL E L AI EA RKEI 299
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 440 KRL nvesdg WFFD V WQ PE HIDE P EC wslrsdsawhgfknidneh MY LDP I K V TI LT PG M skegtmqsf GI PASI VA K YL D 519
Cdd:COG1982 300 NKI ------ PGLY V FG PE DLGA P GV ------------------- YD LDP T K L TI DV PG L --------- GI SGYE VA E YL R 345
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 520 E R - GI I VE KTGP YN L LFL F S I G ID K TKALS L LR A MTDF KR SF D L N LRVKNM LP slyqeapefyenmriqdlarnihqlve 598
Cdd:COG1982 346 E E y GI Q VE LADL YN I LFL L S L G DT K EDIER L VA A LKEL KR LY D K N APLEEV LP --------------------------- 398
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 599 qhnlpdlmy R AF EV LP TM VM N P YQ AF Q kelh G E V E E V Y LE DM VG KVN A N M IL PYPPG V PL V MPGE ML TEE srp V LEF L QM 678
Cdd:COG1982 399 --------- L AF PP LP EL VM S P RE AF F ---- A E T E L V P LE EA VG RIA A E M VI PYPPG I PL L MPGE RI TEE --- V IDY L RA 462
570 580 590
....*....|....*....|....*....|...
gi 2293748506 679 L C E I G AHY PGFE T dihgayrqa DGRY T VK V L K N 711
Cdd:COG1982 463 L E E A G GRF PGFE D --------- PELR T IR V V K E 486
Orn_deC_like
cd00615 Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
131-441
1.77e-122
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Pssm-ID: 99739 [Multi-domain]
Cd Length: 294
Bit Score: 367.34
E-value: 1.77e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 131 PL TK AL FK Y VRE G KYT F CT PGH M GG TA F Q KS pvgsl FY D F F G A N TM K S DV SI s VSE L GS LLD HS GP H KEA E E YIS R V F N A 210
Cdd:cd00615 1 PL FE AL KE Y AKR G IIS F HV PGH K GG RG F R KS ----- FY E F Y G E N LF K A DV TE - LTG L DD LLD PT GP I KEA Q E LAA R A F G A 74
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 211 ERSYMVT NGTS TA NK I V GMYSAPA G STV LIDRNCHKS LTHLMMM S DIT P I Y FR P T RN A Y - GI L GGIP QSE F SR A T I AKR v 289
Cdd:cd00615 75 KHTFFLV NGTS SS NK A V ILAVCGP G DKI LIDRNCHKS VINGLVL S GAV P V Y LK P E RN P Y y GI A GGIP PET F KK A L I EHP - 153
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 290 ketpnat WPVH AVITN S TY D G LL YN TDF I KNTLD -- VKSIHF D S A WVPYTN FHPI YKGKCG M S G G rvegkv IYET QSTHK 367
Cdd:cd00615 154 ------- DAKA AVITN P TY Y G IC YN LRK I VEEAH hr GLPVLV D E A HGAHFR FHPI LPSSAA M A G A ------ DIVV QSTHK 220
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2293748506 368 L L A A FS Q A SMIHVKGD - I N EETF NEA YMM H TT TSP H Y G I V AS TET A A AMM k GNA GK R L INGS IE R A IRF R K EI KR 441
Cdd:cd00615 221 T L P A LT Q G SMIHVKGD l V N PDRV NEA LNL H QS TSP S Y L I L AS LDV A R AMM - ALE GK E L VEEL IE L A LYA R Q EI NK 294
Name
Accession
Description
Interval
E-value
PRK15400
PRK15400 lysine decarboxylase;
1-713
0e+00
lysine decarboxylase;
Pssm-ID: 185298 [Multi-domain]
Cd Length: 714
Bit Score: 1525.16
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 1 MNVIAI M NHMGVYFKEEPIRELH Q ALE G L D F R IVYPNDR E DLLKLIENNARLCGVIFDWDKYNLELCEEIS QL NE YM PLY 80
Cdd:PRK15400 1 MNVIAI L NHMGVYFKEEPIRELH R ALE R L N F Q IVYPNDR D DLLKLIENNARLCGVIFDWDKYNLELCEEIS KM NE NL PLY 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 81 AFANTYSTLDVSLNDLR M QV R FFEYALGAA Q DIA A KIKQ N TDEYIDTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQK 160
Cdd:PRK15400 81 AFANTYSTLDVSLNDLR L QV S FFEYALGAA D DIA N KIKQ T TDEYIDTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQK 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 161 SPVGSLFYDFFG A NTMKSD V SISVSELGSLLDHSGPHKEAEEYI S RVFNA E RSYMVTNGTSTANKIVGMYSAPAGSTVLI 240
Cdd:PRK15400 161 SPVGSLFYDFFG P NTMKSD I SISVSELGSLLDHSGPHKEAEEYI A RVFNA D RSYMVTNGTSTANKIVGMYSAPAGSTVLI 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 241 DRNCHKSLTHLMMMSD I TPIYFRPTRNAYGILGGIPQSEF SR ATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIK N 320
Cdd:PRK15400 241 DRNCHKSLTHLMMMSD V TPIYFRPTRNAYGILGGIPQSEF QH ATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIK K 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 321 TLDVKSIHFDSAWVPYTNF H PIY K GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD I NEETFNEAYMMHTTTS 400
Cdd:PRK15400 321 TLDVKSIHFDSAWVPYTNF S PIY E GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD V NEETFNEAYMMHTTTS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 401 PHYGIVASTETAAAMMKGNAGKRLINGSIERAI R FRKEIKRL NV ESDGWFFDVWQP E HID EP ECW S LRSDS A WHGFKNID 480
Cdd:PRK15400 401 PHYGIVASTETAAAMMKGNAGKRLINGSIERAI K FRKEIKRL RT ESDGWFFDVWQP D HID TT ECW P LRSDS T WHGFKNID 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 481 NEHMYLDPIKVT I LTPGM S K E GTM QS FGIPASIVAKYLDE R GI I VEKTGPYNLLFLFSIGIDKTKALSLLRA M TDFKR S F 560
Cdd:PRK15400 481 NEHMYLDPIKVT L LTPGM K K D GTM SD FGIPASIVAKYLDE H GI V VEKTGPYNLLFLFSIGIDKTKALSLLRA L TDFKR A F 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 561 DLNLRVKNMLPSLY Q E A PEFYENMRIQ D LA R NIH Q L VEQ HNLPDLMYRAFEVLPTMVM N PY Q AFQKELHG EV EEVYL ED M 640
Cdd:PRK15400 561 DLNLRVKNMLPSLY R E D PEFYENMRIQ E LA Q NIH K L IVH HNLPDLMYRAFEVLPTMVM T PY A AFQKELHG MT EEVYL DE M 640
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2293748506 641 VG K VNANMILPYPPGVPLVMPGEM L TEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVLK NDK 713
Cdd:PRK15400 641 VG R VNANMILPYPPGVPLVMPGEM I TEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVLK EES 713
PRK15399
PRK15399 lysine decarboxylase;
1-712
0e+00
lysine decarboxylase;
Pssm-ID: 185297 [Multi-domain]
Cd Length: 713
Bit Score: 1432.99
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 1 MN V IAIM NHM GV YF K E EPI R EL HQ AL EGLD F RIVY P NDRE DLLK L IE N N A R L CGVIFDWD K Y N L E LC EE I S QLNEY M PLY 80
Cdd:PRK15399 1 MN I IAIM GPH GV FY K D EPI K EL ES AL QAQG F QTIW P QNSV DLLK F IE H N P R I CGVIFDWD E Y S L D LC SD I N QLNEY L PLY 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 81 AF A NT Y ST L DVS LN D L RM QVR FFEYALGAA Q DIA AK I K Q N T D EY I D T I L PP L TKALF K YV R EGKYTFCTPGHMGGTA F QK 160
Cdd:PRK15399 81 AF I NT H ST M DVS VQ D M RM ALW FFEYALGAA E DIA IR I R Q Y T N EY L D N I T PP F TKALF T YV K EGKYTFCTPGHMGGTA Y QK 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 161 SPVG S LFYDFFG A NT M K S DVSISV S ELGSLLDH S GPH K EAEEYI S R V F N AE R SY M VTNGTST A NKIVGMY S APAGST V LI 240
Cdd:PRK15399 161 SPVG C LFYDFFG G NT L K A DVSISV T ELGSLLDH T GPH L EAEEYI A R T F G AE Q SY I VTNGTST S NKIVGMY A APAGST L LI 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 241 DRNCHKSL T HL M MMSD IT PI YFR PTRNA Y GILGGIP QS EF S R AT I AKR V KE T PN A T WPVHAVITNSTYDGLLYNTD F IK N 320
Cdd:PRK15399 241 DRNCHKSL A HL L MMSD VV PI WLK PTRNA L GILGGIP RR EF T R DS I EEK V AA T TQ A Q WPVHAVITNSTYDGLLYNTD W IK Q 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 321 TLDV K SIHFDSAWVPYT N FHPIY K GK C GMSG G RV E GKVI Y ETQSTHK L LAAFSQAS M IH V KG DIN EETFNEA Y MMHT T TS 400
Cdd:PRK15399 321 TLDV P SIHFDSAWVPYT H FHPIY Q GK S GMSG E RV P GKVI F ETQSTHK M LAAFSQAS L IH I KG EYD EETFNEA F MMHT S TS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 401 P H Y G IVAS T ETAAAM MK GN A GKRLIN G S I ERA IR FRKE IK RL NV ESDGWFFD V WQPE HI DE P ECW SLRSDSA WHGFK NI D 480
Cdd:PRK15399 401 P S Y P IVAS V ETAAAM LR GN P GKRLIN R S V ERA LH FRKE VQ RL RE ESDGWFFD I WQPE NV DE A ECW PVAPGEQ WHGFK DA D 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 481 NE HM Y LDP I KVTILTPGM SKE G T M QSF GIPA SI VAK Y LDERGI I VEKTGPYNLLFLFSIGIDKTKA LS LLR AM T D FKR SF 560
Cdd:PRK15399 481 AD HM F LDP V KVTILTPGM DEQ G N M SEE GIPA AL VAK F LDERGI V VEKTGPYNLLFLFSIGIDKTKA MG LLR GL T E FKR AY 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 561 DLNLRVKNMLP S LY Q E A P E FY E NMRIQDLA RN IH Q L VEQ H N LP D LM Y RAF E VLP T M V M N P Y QA F Q KELH GEVE E V Y LE DM 640
Cdd:PRK15399 561 DLNLRVKNMLP D LY A E D P D FY R NMRIQDLA QG IH K L IRK H D LP G LM L RAF D VLP E M I M T P H QA W Q RQIK GEVE T V A LE QL 640
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2293748506 641 VG K V N ANMILPYPPGVPL V MPGEM L TEESR P VL E FL Q MLC E IG A HYPGFETDIHGA Y R QA DG R Y T V K VLK ND 712
Cdd:PRK15399 641 VG R V S ANMILPYPPGVPL L MPGEM I TEESR A VL D FL L MLC S IG Q HYPGFETDIHGA K R DE DG V Y R V R VLK MA 712
OKR_DC_1
pfam01276 Orn/Lys/Arg decarboxylase, major domain;
130-545
0e+00
Orn/Lys/Arg decarboxylase, major domain;
Pssm-ID: 396025 [Multi-domain]
Cd Length: 417
Bit Score: 697.33
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 130 PPL T KALFKYVR E G K YTF CT PGH M GG TA FQK S P V G SL FYDFFG A N TMKS DV S I SVS ELG S LLDH S G PH KEA EE Y IS RVF N 209
Cdd:pfam01276 1 PPL Y KALFKYVR R G N YTF HC PGH Q GG AG FQK H P A G RF FYDFFG E N LLRI DV C I EDV ELG D LLDH E G AI KEA QK Y AA RVF G 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 210 A ER SY M V T NGTS TA NK I VGM YSAPA G S T V LIDRNCHKS LT H LM M M S DI TP I Y FR P T RNAYGI L GGIP QS EF SRA T IAKRV 289
Cdd:pfam01276 81 A DK SY F V V NGTS GS NK T VGM AVCTP G D T I LIDRNCHKS IH H AL M L S GA TP V Y LE P S RNAYGI I GGIP LH EF QEE T LKEAI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 290 K E T P N A TW P VH AVITN S TYDG L LYN TDF I KN TL DVK S -- I H FDSAWV P Y TN F H PIY KGKCG M S G GRVE G KV I YE TQS T HK 367
Cdd:pfam01276 161 A E V P D A KG P RL AVITN P TYDG V LYN AKE I VD TL HHL S dp I L FDSAWV G Y EQ F I PIY ADASP M G G ENEN G PG I FV TQS V HK 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 368 LLAA F SQAS M IH V K GD -- I N EET FNEA Y MMH T TTSP H Y G I V AS TET AA A M MK GN A G K RL I N GSI ERAI R FRK E I KR LN ve 445
Cdd:pfam01276 241 LLAA L SQAS Y IH K K EG hi V N HDR FNEA F MMH A TTSP S Y P I F AS LDV AA K M LE GN S G R RL W N ECV ERAI E FRK A I DT LN -- 318
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 446 s DGW FF DV W Q PE HI D EP ECW SLRSDSA WHGF KNIDNEHMY LDP I K V TILTPGM SKE G TMQS FG I PA S IVAK Y L D E R GI IV 525
Cdd:pfam01276 319 - NCE FF RP W N PE IV D GK ECW PFHPGET WHGF EGYADNQYF LDP C K L TILTPGM DED G EYSE FG V PA T IVAK W L R E N GI VP 397
410 420
....*....|....*....|
gi 2293748506 526 EKT GPY N L LFLF SI G I D K TK 545
Cdd:pfam01276 398 EKT DLN N I LFLF TP G E D R TK 417
LdcC
COG1982 Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
124-711
0e+00
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
Pssm-ID: 441585 [Multi-domain]
Cd Length: 486
Bit Score: 579.37
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 124 Y I D TI L P PL TK AL F KY VRE G KYT F CT PGH M GG TA F qkspv G SL FYDFFG A N TMKS D VSI s VSE L GS L L D HS G PH KEA E E Y 203
Cdd:COG1982 1 Y M D QL L T PL FD AL K KY AER G PVS F HV PGH K GG RG F ----- G RE FYDFFG E N VFRL D LTE - LPG L DD L H D PE G VI KEA Q E L 74
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 204 ISRV F N A E R SYMVT NGTS TA NK IVGMYSAPA G ST VL ID RNCHKS LT H LMMM S DIT P I Y FR P T - R N AY GI L GGI PQSEFSR 282
Cdd:COG1982 75 AAEA F G A D R TFFLV NGTS SG NK AMILAVCGP G DK VL VP RNCHKS VI H GLIL S GAI P V Y LN P E i D N EL GI I GGI TPEAVEE 154
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 283 A tiakr VK E T P N A twp VHAV ITN S TY D G LL Y NTDF I KNTLD -- VKSIHF D S A WVPYTN FHP IYK g KCG M SG G rvegk VIY 360
Cdd:COG1982 155 A ----- LI E H P D A --- KAVL ITN P TY Y G VC Y DLKA I AELAH eh GIPVLV D E A HGAHFG FHP DLP - RSA M EA G ----- ADL 220
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 361 ET QSTHK L L A A FS Q A SM I HVKG D - INE E TF NEA Y M MHTT TSP H Y GIV AS TET A AAM M K G N a G KR L INGSI E R AI RF RKEI 439
Cdd:COG1982 221 VV QSTHK T L G A LT Q S SM L HVKG G r VDH E RV NEA L M LLQS TSP S Y LLM AS LDV A RRQ M A G E - G EE L LDEAL E L AI EA RKEI 299
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 440 KRL nvesdg WFFD V WQ PE HIDE P EC wslrsdsawhgfknidneh MY LDP I K V TI LT PG M skegtmqsf GI PASI VA K YL D 519
Cdd:COG1982 300 NKI ------ PGLY V FG PE DLGA P GV ------------------- YD LDP T K L TI DV PG L --------- GI SGYE VA E YL R 345
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 520 E R - GI I VE KTGP YN L LFL F S I G ID K TKALS L LR A MTDF KR SF D L N LRVKNM LP slyqeapefyenmriqdlarnihqlve 598
Cdd:COG1982 346 E E y GI Q VE LADL YN I LFL L S L G DT K EDIER L VA A LKEL KR LY D K N APLEEV LP --------------------------- 398
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 599 qhnlpdlmy R AF EV LP TM VM N P YQ AF Q kelh G E V E E V Y LE DM VG KVN A N M IL PYPPG V PL V MPGE ML TEE srp V LEF L QM 678
Cdd:COG1982 399 --------- L AF PP LP EL VM S P RE AF F ---- A E T E L V P LE EA VG RIA A E M VI PYPPG I PL L MPGE RI TEE --- V IDY L RA 462
570 580 590
....*....|....*....|....*....|...
gi 2293748506 679 L C E I G AHY PGFE T dihgayrqa DGRY T VK V L K N 711
Cdd:COG1982 463 L E E A G GRF PGFE D --------- PELR T IR V V K E 486
PRK15029
PRK15029 arginine decarboxylase; Provisional
16-710
0e+00
arginine decarboxylase; Provisional
Pssm-ID: 184989 [Multi-domain]
Cd Length: 755
Bit Score: 569.86
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 16 EEPIRE L HQ AL EGLDFRIVYPNDRE D LLKLIEN N ARLCGVI F DWDKYNLELCEEIS QL ------- NEYM P LYAFANTYST 88
Cdd:PRK15029 18 GNAVER L AD AL SQQNVTVIKSTSFD D GFAILSS N EAIDCLM F SYQMEHPDEHQNVR QL igklher QQNV P VFLLGDREKA 97
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 89 L DVSLN DL RMQ V RF F EYA L GAAQ D - IA AKIKQNTDE Y IDTI LPPL TK AL F KY VREGK Y TFCT PGH M GG TA F Q K S P V G SLF 167
Cdd:PRK15029 98 L AAMDR DL LEL V DE F AWI L EDTA D f IA GRAVAAMTR Y RQQL LPPL FS AL M KY SDIHE Y SWAA PGH Q GG VG F T K T P A G RFY 177
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 168 Y D FF G A N TMKS D VS I SVSE LGSLLDH S G PHK E A E E Y IS RVF N A E RS YM V TN GTS TA N KIVGMYSAPAGST V LI DRNCHKS 247
Cdd:PRK15029 178 H D YY G E N LFRT D MG I ERTS LGSLLDH T G AFG E S E K Y AA RVF G A D RS WS V VV GTS GS N RTIMQACMTDNDV V VV DRNCHKS 257
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 248 LTHLMMMSDIT P I Y FR P T RN A YGI L G G I PQS E FSRA T IA K RVK E T P NA ----- TW P VHA V I TN S TYDG LL YN TDFIKNT L 322
Cdd:PRK15029 258 IEQGLILTGAK P V Y MV P S RN R YGI I G P I YPQ E MQPE T LQ K KIS E S P LT kdkag QK P SYC V V TN C TYDG VC YN AKEAQDL L 337
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 323 DVK S -- I HFD S AW VP Y TN F H PIY KGKCG M S G -- G RVE G KVIYE T Q STHKLL A A F SQAS M IHV --- K G D IN EET FN E AYMM 395
Cdd:PRK15029 338 EKT S dr L HFD E AW YG Y AR F N PIY ADHYA M R G ep G DHN G PTVFA T H STHKLL N A L SQAS Y IHV reg R G A IN FSR FN Q AYMM 417
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 396 H T TTSP H Y G I V AS TET A AA MM K GN A G KR L INGS I ER A IR FR KEIK RL NV E --- SDG WFF DV W QP E HIDE P E --------- 463
Cdd:PRK15029 418 H A TTSP L Y A I C AS NDV A VS MM D GN S G LS L TQEV I DE A VD FR QAMA RL YK E fta DGS WFF KP W NK E VVTD P Q tgktydfad 497
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 464 ----------- CW SLRSDSA WHGFK NIDNEHMY LDPIKV T IL T PGM SKE G TMQSF G I PA SI V AKY L DER GI IVEK T GPYN 532
Cdd:PRK15029 498 aptkllttvqd CW VMHPGES WHGFK DLPDNWSM LDPIKV S IL A PGM GED G ELEET G V PA AL V TAW L GRH GI VPTR T TDFQ 577
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 533 LL FLFS I G IDKT K ALS L LRAMTD FKR SF D L N LRVKNML P S L YQEA P EF Y E NM R I Q DL ARNIHQLVEQH N LPDLMYR A FEV 612
Cdd:PRK15029 578 IM FLFS M G VTRG K WGT L VNTLCS FKR HY D A N TPLAQVM P E L VEQY P DT Y A NM G I H DL GDTMFAWLKEN N PGARLNE A YSG 657
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 613 LP TMVMN P YQ A FQKELHGE VE E V YL E DMV G KVN AN MIL PYPPG V P LVMP GE MLTEESR P VLEF L QM L CEIGA H Y PGFE TD 692
Cdd:PRK15029 658 LP VAEIT P RE A YNAIVDNN VE L V SI E NLP G RIA AN SVI PYPPG I P MLLS GE NFGDKNS P QVSY L RS L QSWDH H F PGFE HE 737
730
....*....|....*...
gi 2293748506 693 IH G A y RQA DG R Y T V KVL K 710
Cdd:PRK15029 738 TE G T - EII DG I Y H V MCV K 754
PRK13578
PRK13578 ornithine decarboxylase; Provisional
122-703
2.45e-123
ornithine decarboxylase; Provisional
Pssm-ID: 237434 [Multi-domain]
Cd Length: 720
Bit Score: 384.32
E-value: 2.45e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 122 DE Y IDTI LPP LTKA L FK YV RE G KY TF CT PGH M GG TA F Q K S P V G SL FYDFFG A N TMKS D VSISVSE LG S LL D H S G PH K E A E 201
Cdd:PRK13578 101 SK Y EENL LPP FFDT L TD YV EM G NS TF DC PGH Q GG QF F R K H P A G RQ FYDFFG E N LFRA D MCNADVK LG D LL I H E G AA K D A Q 180
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 202 EYISR VFNA ERS Y M V T NGTS TA NK I V GMYSAPA G ST VL I DRN C HKS LT H - LMMMSDI TP I Y FRPT RN AY G IL GGI PQSE F 280
Cdd:PRK13578 181 KHAAK VFNA DKT Y F V L NGTS AS NK V V TNALLTP G DL VL F DRN N HKS NH H g ALIQAGA TP V Y LETA RN PF G FI GGI DAHC F 260
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 281 S ---- R AT I AKRVK E TPNATW P VH - AVI TNS TYDG LL YN T ---- D F I KNTL D V ks I H FDSAWV P Y TN F H P IYK g K C gm S G 351
Cdd:PRK13578 261 D eeyl R EQ I REVAP E RADEAR P FR l AVI QLG TYDG TI YN A rqvv D K I GHLC D Y -- I L FDSAWV G Y EQ F I P MMA - D C -- S P 335
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 352 GRV E ------ G kv I YE TQS T HK LL A A FSQ A S M IH ----- V KG D --- INEETF N E A Y M M H TT TSP H Y GIV A STETA A A M MK 417
Cdd:PRK13578 336 LLL E lnendp G -- I FV TQS V HK QQ A G FSQ T S Q IH kkdnh I KG Q ary CPHKRL N N A F M L H AS TSP F Y PLF A ALDVN A K M HE 413
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 418 G NA G K RL INGSIERA I RF RK E I - K R ------- LNVES DG WFFDVWQP E H I - DEPECW S LRSDSA WHGF KNIDNEHMYL DP 488
Cdd:PRK13578 414 G ES G R RL WMECVKLG I EA RK L I l A R cklirpf IPPVV DG KPWQDYPT E Q I a SDLRFF S FEPGEK WHGF EGYAEDQYFV DP 493
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 489 I K VTIL TPG MSK E - G TMQS FGIPA S I V A K YL D E R GI IV EK TGPYNL LFL FSIGI D KT K ALS L LRAMTD F KRSFDLNLRVK 567
Cdd:PRK13578 494 C K LLLT TPG IDA E t G EYED FGIPA T I L A N YL R E N GI VP EK CDLNSI LFL LTPAE D MA K LQQ L VAMLAR F EKHIEDDAPLA 573
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 568 NM LPS L Y QEA PE F Y ENMRIQD L ARNI H Q L VEQ H NLPD L --- M Y R A f EVL P TM VMNP YQ A FQKELH GEVE E V Y L EDMV G KV 644
Cdd:PRK13578 574 EV LPS V Y KKN PE R Y RGYTLRQ L CQEM H D L YVS H DVKQ L qke M F R K - ASF P RV VMNP QD A NIAYIR GEVE L V R L SEAE G RI 652
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2293748506 645 N A NMI LPYPPGV PL V M PGE MLTE esr P V LEFLQM L C E IGAHY PGF ETDIH G A Y -- RQ ADGR 703
Cdd:PRK13578 653 A A EGA LPYPPGV LC V V PGE IWGG --- A V QRYFLA L E E GINLL PGF APELQ G V Y le TD ADGR 710
Orn_deC_like
cd00615 Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
131-441
1.77e-122
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Pssm-ID: 99739 [Multi-domain]
Cd Length: 294
Bit Score: 367.34
E-value: 1.77e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 131 PL TK AL FK Y VRE G KYT F CT PGH M GG TA F Q KS pvgsl FY D F F G A N TM K S DV SI s VSE L GS LLD HS GP H KEA E E YIS R V F N A 210
Cdd:cd00615 1 PL FE AL KE Y AKR G IIS F HV PGH K GG RG F R KS ----- FY E F Y G E N LF K A DV TE - LTG L DD LLD PT GP I KEA Q E LAA R A F G A 74
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 211 ERSYMVT NGTS TA NK I V GMYSAPA G STV LIDRNCHKS LTHLMMM S DIT P I Y FR P T RN A Y - GI L GGIP QSE F SR A T I AKR v 289
Cdd:cd00615 75 KHTFFLV NGTS SS NK A V ILAVCGP G DKI LIDRNCHKS VINGLVL S GAV P V Y LK P E RN P Y y GI A GGIP PET F KK A L I EHP - 153
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 290 ketpnat WPVH AVITN S TY D G LL YN TDF I KNTLD -- VKSIHF D S A WVPYTN FHPI YKGKCG M S G G rvegkv IYET QSTHK 367
Cdd:cd00615 154 ------- DAKA AVITN P TY Y G IC YN LRK I VEEAH hr GLPVLV D E A HGAHFR FHPI LPSSAA M A G A ------ DIVV QSTHK 220
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2293748506 368 L L A A FS Q A SMIHVKGD - I N EETF NEA YMM H TT TSP H Y G I V AS TET A A AMM k GNA GK R L INGS IE R A IRF R K EI KR 441
Cdd:cd00615 221 T L P A LT Q G SMIHVKGD l V N PDRV NEA LNL H QS TSP S Y L I L AS LDV A R AMM - ALE GK E L VEEL IE L A LYA R Q EI NK 294
OKR_DC_1_C
pfam03711 Orn/Lys/Arg decarboxylase, C-terminal domain;
570-701
1.63e-65
Orn/Lys/Arg decarboxylase, C-terminal domain;
Pssm-ID: 461020 [Multi-domain]
Cd Length: 132
Bit Score: 212.38
E-value: 1.63e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 570 LP S L YQEA PE F YE N M RIQ DL ARNI H QLVEQH N LPD L MYR AF EV LP TMV M N P YQ A F Q KELH GEVE E V Y L EDMV G KVN A NMI 649
Cdd:pfam03711 1 LP E L VAAY PE R YE G M GLR DL CQEM H DFYREN N VAR L QKE AF RS LP EPA M T P AE A Y Q ELVR GEVE L V P L DELE G RIA A VGV 80
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2293748506 650 LPYPPG V PL V MPGE MLT EE S RP V L EF L QM L C E IGAHY PGFET D IHG A YR QA D 701
Cdd:pfam03711 81 LPYPPG I PL L MPGE RFG EE N RP I L DY L LA L E E FDNRF PGFET E IHG V YR EE D 132
OKR_DC_1_N
pfam03709 Orn/Lys/Arg decarboxylase, N-terminal domain; This domain has a flavodoxin-like fold, and is ...
14-124
1.22e-34
Orn/Lys/Arg decarboxylase, N-terminal domain; This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Pssm-ID: 427454 [Multi-domain]
Cd Length: 111
Bit Score: 127.35
E-value: 1.22e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 14 F K EEPI REL HQ ALE GLDFRI V YPNDRE DLL KL IE NNARLCG V IFD WD K Y NLE L CE EI SQL N EYM P LYAFAN T YSTL DV SL 93
Cdd:pfam03709 1 L K IAAS REL AE ALE RTGREV V DATSTD DLL AA IE TFTDIAA V VLS WD D Y AAG L LD EI RRR N FDL P VFLLGE T HTSE DV PA 80
90 100 110
....*....|....*....|....*....|.
gi 2293748506 94 ND LR MQVR F F E Y A LGAAQD IA AK I KQNTDE Y 124
Cdd:pfam03709 81 DV LR LIDG F I E L A EDTPEF IA RQ I EAAAKK Y 111
AAT_I
cd01494 Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP) ...
196-381
1.32e-04
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).
Pssm-ID: 99742 [Multi-domain]
Cd Length: 170
Bit Score: 43.14
E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 196 PHK E A EE YIS R VFNAERSYM V - TNGTST AN KIVGMYSAPA G ST V LI D R N C H K S lt HLMMMSDI --- T P IYFRPTRNA YG I 271
Cdd:cd01494 1 KLE E L EE KLA R LLQPGNDKA V f VPSGTG AN EAALLALLGP G DE V IV D A N G H G S -- RYWVAAEL aga K P VPVPVDDAG YG G 78
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748506 272 L ggipqsefs RAT I AKRV K ET PN atw PVHA VIT NS T YD G LLY ---- NTDF I KNTLDVK s IHF D S A WVPY tnfhpiykgkc 347
Cdd:cd01494 79 L --------- DVA I LEEL K AK PN --- VALI VIT PN T TS G GVL vplk EIRK I AKEYGIL - LLV D A A SAGG ----------- 134
170 180 190
....*....|....*....|....*....|....*..
gi 2293748506 348 GMSGGR V EGKVIYE --- T Q S T HK L L AA f SQASMIH VK 381
Cdd:cd01494 135 ASPAPG V LIPEGGA dvv T F S L HK N L GG - EGGGVVI VK 170
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
