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Conserved domains on  [gi|2293748516|ref|WP_259004475|]
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methionine ABC transporter permease MetI [Serratia sp. AKBS12]

Protein Classification

methionine ABC transporter permease MetI( domain architecture ID 10793476)

methionine ABC transporter permease MetI is part of the binding-protein-dependent transport system for D-methionine and the toxic methionine analog alpha-methyl-methionine

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
1-217 9.93e-122

D-methionine ABC transporter permease MetI;


:

Pssm-ID: 182726  Cd Length: 217  Bit Score: 344.02  E-value: 9.93e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516   1 MSEAMMWLMARGVWETVMMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANPALYKVLSGLVNIFRSIPFIILLVWMIPFTR 80
Cdd:PRK10782    1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  81 MIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITLITLVGY 160
Cdd:PRK10782   81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2293748516 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLILLVVLVYLIQFCGDRIVKTVTHK 217
Cdd:PRK10782  161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
 
Name Accession Description Interval E-value
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
1-217 9.93e-122

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 344.02  E-value: 9.93e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516   1 MSEAMMWLMARGVWETVMMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANPALYKVLSGLVNIFRSIPFIILLVWMIPFTR 80
Cdd:PRK10782    1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  81 MIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITLITLVGY 160
Cdd:PRK10782   81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2293748516 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLILLVVLVYLIQFCGDRIVKTVTHK 217
Cdd:PRK10782  161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 1-217 3.87e-92

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 268.85  E-value: 3.87e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516   1 MSEAMMWLMARGVWETVMMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANPALYKVLSGLVNIFRSIPFIILLVWMIPFTR 80
Cdd:COG2011     4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  81 MIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITLITLVGY 160
Cdd:COG2011    84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2293748516 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLILLVVLVYLIQFCGDRIVKTVTHK 217
Cdd:COG2011   164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 14-161 1.00e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 69.61  E-value: 1.00e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  14 WETVMMTFVSGFFGFVIGLPVGVLLYVTRPGqiianpaLYKVLSGLVNIFRSIPFIILLVWMIPFTRMIVGTSIGLQ--- 90
Cdd:cd06261     2 LNTLLLALIATLLALVLGLLLGIILARKRGK-------LDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlgl 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2293748516  91 AAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITLITLVGYS 161
Cdd:cd06261    75 PALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 11-147 1.58e-10

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 58.71  E-value: 1.58e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  11 RGVWETVMMTFVSGFFGFVIGLPVGVLlyvtRPGQIIANPALYKVLSGLVNIFRSIPfiiLLVWMIPFTrMIVGtsIGLQ 90
Cdd:TIGR01097  58 KALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIP---ELVWALIFV-AAVG--LGPF 127

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2293748516  91 AAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLV 147
Cdd:TIGR01097 128 AGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 49-159 1.85e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 57.69  E-value: 1.85e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  49 NPALYKVLSGLVNIFRSIP-FIILLVWMIPFTRMIVGTSIglQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMG 127
Cdd:pfam00528  13 GRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGI--LPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2293748516 128 ATPMQIVKKVLLPEALPGLVNAATITLITLVG 159
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALG 122
 
Name Accession Description Interval E-value
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
1-217 9.93e-122

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 344.02  E-value: 9.93e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516   1 MSEAMMWLMARGVWETVMMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANPALYKVLSGLVNIFRSIPFIILLVWMIPFTR 80
Cdd:PRK10782    1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  81 MIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITLITLVGY 160
Cdd:PRK10782   81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2293748516 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLILLVVLVYLIQFCGDRIVKTVTHK 217
Cdd:PRK10782  161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 1-217 3.87e-92

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 268.85  E-value: 3.87e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516   1 MSEAMMWLMARGVWETVMMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANPALYKVLSGLVNIFRSIPFIILLVWMIPFTR 80
Cdd:COG2011     4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  81 MIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITLITLVGY 160
Cdd:COG2011    84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2293748516 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLILLVVLVYLIQFCGDRIVKTVTHK 217
Cdd:COG2011   164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 1-153 5.10e-17

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 76.25  E-value: 5.10e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516   1 MSEAMM-WLMARG------VWETVMMTFVSGFFGFVIGLPVGVLlyVTRPgqiianPALYKVLSGLVNIFRSIPFIILLV 73
Cdd:COG1174     1 MNLSLIeWLADNRdgilalLLEHLLLVLLALLIALLIAVPLGIL--ITRR------RRLAGLVLGVANILQTIPSLALLA 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  74 WMIPFTrmivgtSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALP----GLVNA 149
Cdd:COG1174    73 LLIPLL------GIGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPvilaGIRTA 146


                  ....
gi 2293748516 150 ATIT 153
Cdd:COG1174   147 AVQN 150
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 8-158 1.87e-16

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 74.73  E-value: 1.87e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516   8 LMARGVWETVMMTFVSGFFGFVIGLPVGVllyvtrpGQIIANPALYKVLSGLVNIFRSIPFIILLVW---MIPFtrmiVG 84
Cdd:COG0765    14 LLLEGLLVTLLLTVLAIVLGLVLGLLLAL-------ARLSPNPVLRWLATAYVEFFRGTPLLVQLFFiyfGLPL----LG 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2293748516  85 TSIG-LQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEA----LPGLVNaatiTLITLV 158
Cdd:COG0765    83 IDLSpFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQAlriiLPPLGN----EFISLL 157
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 14-161 1.00e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 69.61  E-value: 1.00e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  14 WETVMMTFVSGFFGFVIGLPVGVLLYVTRPGqiianpaLYKVLSGLVNIFRSIPFIILLVWMIPFTRMIVGTSIGLQ--- 90
Cdd:cd06261     2 LNTLLLALIATLLALVLGLLLGIILARKRGK-------LDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlgl 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2293748516  91 AAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITLITLVGYS 161
Cdd:cd06261    75 PALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 12-150 1.52e-13

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 67.81  E-value: 1.52e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  12 GVWETVMMTFVSGFFGFVIGLPVGVL--LYVTRpgqiIANPALYKVLSGLVNIFRSIPFIIL----LVWMIPFTRMIV-- 83
Cdd:COG0573    74 GILPLIVGTLLVSLIALLIAVPLGLGiaIFLSE----YAPPRLRRILKPAIELLAGIPSVVYgfwgLFVLVPLLRDLFpw 149

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2293748516  84 -GTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAA 150
Cdd:COG0573   150 pPSGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAV 217
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 13-158 4.89e-13

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 65.94  E-value: 4.89e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  13 VWETVMMTFVSGFFGFVIGLPVGVLLYvtrpgqiiANPALYKVLSGLVNIFRSIPFIILlvwmIPFTRMIVGtsIGLQAA 92
Cdd:COG0600    63 LLASLLRVLLGFALAALLGVPLGLLLG--------LSRLLRRLLDPLLVFLRPIPPLAL----APLLILWFG--IGEASK 128

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  93 IVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALP----GLVNAATITLITLV 158
Cdd:COG0600   129 IFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPyiftGLRIALGLAWIGLV 198
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 4-148 1.49e-12

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 64.33  E-value: 1.49e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516   4 AMMWLMARGVWETVMMTFVSGFFGFVIGLPVGVLlyVTRPgqIIANPALYKVLSGLVNIFRSIPfiiLLVWMIPFTRmIV 83
Cdd:COG3639    44 SYLPDLLSALLETLAIALLGTLLGAVLALPLAFL--AARN--LAPNPWVRLLARRLLNVLRAIP---ELVWALIFVA-AV 115

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2293748516  84 GtsIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVN 148
Cdd:COG3639   116 G--LGPFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLS 178
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 11-147 1.58e-10

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 58.71  E-value: 1.58e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  11 RGVWETVMMTFVSGFFGFVIGLPVGVLlyvtRPGQIIANPALYKVLSGLVNIFRSIPfiiLLVWMIPFTrMIVGtsIGLQ 90
Cdd:TIGR01097  58 KALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIP---ELVWALIFV-AAVG--LGPF 127

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2293748516  91 AAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLV 147
Cdd:TIGR01097 128 AGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 49-159 1.85e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 57.69  E-value: 1.85e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  49 NPALYKVLSGLVNIFRSIP-FIILLVWMIPFTRMIVGTSIglQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMG 127
Cdd:pfam00528  13 GRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGI--LPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2293748516 128 ATPMQIVKKVLLPEALPGLVNAATITLITLVG 159
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALG 122
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 16-156 1.78e-09

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 55.89  E-value: 1.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  16 TVMMTFVSGFFGFVIGLPVGVLL-YVTRpgqiianpALYKVLSGLVNIFRSIPFIILLVWMIpftrMIVGTSIGLqaAIV 94
Cdd:COG1173    81 SLLVGLLAVLIALVIGVLLGLLAgYFGG--------WVDAVLMRLVDVLLAFPSLLLAIALV----AVLGPGLLN--VIL 146

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2293748516  95 PLTVGAAPFIARMVENALLEI-PSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITLIT 156
Cdd:COG1173   147 ALGLTGWPGYARLVRAQVLSLrEREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIAS 209
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 20-154 1.07e-08

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 53.81  E-value: 1.07e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  20 TFVSGFFGFVIGLPVGVL--LYVTrpgqIIANPALYKVLSGLVNIFRSIPFIILLVW----MIPFTRMIVGTSIGLQAAI 93
Cdd:TIGR02138  68 TLITSLIALLIAVPVGIGiaIFLS----EIAPKRVRSVLKPVVELLAGIPSVVYGFWglfvLVPFLKPHFQPFLGSNLGL 143

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2293748516  94 VPLTVGAA------------PFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITL 154
Cdd:TIGR02138 144 IPLFGGPIltagivlaimilPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGL 216
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
13-155 2.23e-08

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 53.63  E-value: 2.23e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  13 VWETVMMTFVSGFFGFVIGLPVGVLLYVTR-PGQiianpalyKVLSGLVNIFRSIP-FIILLVWMI---------PFTRM 81
Cdd:COG1178    56 LGNTLLLALLVTLLSLLLGVPLAWLLARTDfPGR--------RLLRWLLLLPLALPpYVVALAWIAlfgpngllnTLLRA 127

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2293748516  82 IVGTSI----GLQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITLI 155
Cdd:COG1178   128 LFGLEPpdiyGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFL 205
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 16-153 2.47e-08

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 52.83  E-value: 2.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  16 TVMMTFVSGFFGFVIGLPVGVLLYVTR-PGQiianpalyKVLSGLVNIFRSIPF----IILLV----------WMIPFTR 80
Cdd:COG0555    59 SLGTALIAALINLVFGLPLAWVLVRYRfPGK--------RLVDALVDLPFALPTavagIALLLlfgpngwlgqLLAPLGI 130

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2293748516  81 MIVGTSIGlqaAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATIT 153
Cdd:COG0555   131 KVAFTPLG---IVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALA 200
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
11-159 8.25e-07

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 48.62  E-value: 8.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  11 RGVWETVMMTFVSGFFGFVIGLPVGVLLYVTRPgqiianpALYKVLSGLVNIFRSIPFIIL-LVWMIPFTRMIVGTSIGL 89
Cdd:COG1178   338 RALLNSLLLALLAALLAVLLALLLAYLVRRRRG-------RLARLLDRLAMLPYAVPGIVLgLGLLLLFNRPLPLLLYGT 410

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2293748516  90 QAAIV-PLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITLITLVG 159
Cdd:COG1178   411 LAILVlAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMK 481
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 68-160 1.14e-06

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 47.78  E-value: 1.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  68 FIILLVWMIPFTRMIVGT-----SIGL----QAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVL 138
Cdd:COG0395   114 LLILATLMIPGQVLLIPLyllfrQLGLlntyWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIV 193

                          90       100
                  ....*....|....*....|..
gi 2293748516 139 LPEALPGLvnaATITLITLVGY 160
Cdd:COG0395   194 LPLSKPAL---ATVAIFTFIGA 212
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
10-155 1.20e-06

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 48.16  E-value: 1.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  10 ARGVWETVMMTF----VSGFFGFVIGLPVGVLLyvtrpgqiIANPALYKVLSGLVNIFRSIPFIILLVWMIpftrMIVGt 85
Cdd:PRK10952  139 AIGAWSQAMVTLalvlTALLFCIVIGLPLGIWL--------ARSPRAAKIIRPLLDAMQTTPAFVYLVPIV----MLFG- 205

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  86 sIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITLI 155
Cdd:PRK10952  206 -IGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLM 274
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 101-155 1.46e-06

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 47.69  E-value: 1.46e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2293748516 101 APFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITLI 155
Cdd:PRK15050  173 TPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLL 227
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 15-143 1.76e-06

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 46.97  E-value: 1.76e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  15 ETVMMTFVSGFFGFVIGLPVGVLLYVTRP--GQIIANPALykvlsGLVNIFRSIPfIILLVWMIPFTRMIVGTSI---GL 89
Cdd:PRK09494   17 EGAKMTLWISVLGLAGGLVIGLLAGFARAygGWIANHIAL-----VFIELIRGTP-IVVQVMFIYFALPMAFNDLridPF 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2293748516  90 QAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEAL 143
Cdd:PRK09494   91 TAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLAL 144
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 8-159 1.94e-06

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 47.37  E-value: 1.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516   8 LMARGVWETVMMTFVSGFFGFVIGLPVGVLLYVTRpgqiiaNPALYKVLSGLVNIFRSIP---FIILLVW-------MIP 77
Cdd:COG0601    90 LIAERLPVTLELALLALLLALLIGIPLGILAALRR------GSWLDRLITVLALLGISIPsfwLGLLLILlfavklgWLP 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  78 ---FTRMIVGTSIGLQAAIVP---LTVGAAPFIARMVENALLE-IPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAA 150
Cdd:COG0601   164 vsgRVSPWEDFLDALRHLILPaltLALGSLAGIARLTRSSMLEvLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVL 243


                  ....*....
gi 2293748516 151 TITLITLVG 159
Cdd:COG0601   244 GLQLGGLLG 252
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 102-159 4.16e-06

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 46.29  E-value: 4.16e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2293748516 102 PFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITLITLVG 159
Cdd:COG1176   167 PFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALG 224
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 11-156 4.71e-06

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 45.87  E-value: 4.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  11 RGVWETVMMTFVSGFFGFVIGLPVGVLLYVTRPgqiianpALYKVLSGLVNIFRSIPFIILLVWMIPFTRMIvGTSIGLQ 90
Cdd:COG1177    61 DALLNSLLIALLSTLLATVLGTPAALALARYRF-------RGRRLLLALLLLPLVVPGIVLGVALLLLFSAL-GLSGGLW 132

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2293748516  91 AAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATITLIT 156
Cdd:COG1177   133 GLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTL 198
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
13-147 2.65e-05

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 43.66  E-value: 2.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  13 VWETVMMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANPALYKVLsglVNIFRSIPFIILLVW---MIP-FTRMIVG---- 84
Cdd:PRK15107   16 LLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAY---VNVFRSIPLVMVLLWfylIVPgFLQNVLGlspk 92

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2293748516  85 TSIGLQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLV 147
Cdd:PRK15107   93 TDIRLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMV 155
PRK15100 PRK15100
cystine ABC transporter permease;
8-158 4.14e-05

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 43.20  E-value: 4.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516   8 LMARGVWETVMMTFVSGFFGFVIGLPVGVL-LYVTRPGQIIAnpALYkvlsglVNIFRSIPFIILLvWMIPFTRMIVGTS 86
Cdd:PRK15100   14 FLLKGAGYTLQLSIGGMFFGLLLGFILALMrLSPIWPVRWLA--RFY------VSIFRGTPLIAQL-FMIYYGLPQFGIE 84

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2293748516  87 IG-LQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPE----ALPGLVNaatiTLITLV 158
Cdd:PRK15100   85 LDpIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQaartALPPLSN----SFISLV 157
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
74-159 1.18e-04

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 42.05  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  74 WMIPFTRMIVGTSIGLQAAivpLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATIT 153
Cdd:PRK10971  128 WLAKFDIKVTYTWLGIAVA---MAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALS 204


                  ....*.
gi 2293748516 154 LITLVG 159
Cdd:PRK10971  205 FTRSLG 210
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 14-147 1.33e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 41.89  E-value: 1.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  14 WETVMMTFVSGFFGFVIGLPVGVLLYVTR-PGQiianpalyKVLSGLVNIFRSIPFIILLVWMIPFTrMIVGTSIGLQAA 92
Cdd:PRK09500   60 QHSLTMAVFSATFATLIGSLTAVALYRYRfRGK--------KFVSGMLFVVMMSPDIVMAISLLVLF-MLLGIQLGFWSL 130

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2293748516  93 IVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLV 147
Cdd:PRK09500  131 LFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVA 185
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 6-105 5.01e-04

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 38.28  E-value: 5.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516   6 MWLMARGVWETVMMTFVSGFFGFVIGLPVGVLLYVtrpgqiiANPALYKVLSGLVNIFRSIPFIILLVWmIPFTRMIVGT 85
Cdd:TIGR01726   2 LPFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLS-------GNRPLRWIATVYVELFRGTPLLVQLFF-IYFGLPLIGI 73

                          90       100
                  ....*....|....*....|.
gi 2293748516  86 SIG-LQAAIVPLTVGAAPFIA 105
Cdd:TIGR01726  74 RLSpLTAAVIALTLFYGAYLA 94
cysT CHL00187
sulfate transport protein; Provisional
 85-153 2.20e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 38.07  E-value: 2.20e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2293748516  85 TSIGLQAAIVPLTVGAA------PFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLVNAATIT 153
Cdd:CHL00187  127 SHLGIQIVFTKLGVLLAmifvsfPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALT 201
nikC PRK10417
nickel transporter permease NikC; Provisional
 59-152 5.52e-03

nickel transporter permease NikC; Provisional


Pssm-ID: 236687 [Multi-domain]  Cd Length: 272  Bit Score: 36.96  E-value: 5.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  59 LVNIFRSIPFIILLVWMIPftrmIVGTsiGLQAAIVPLTVGAAPFIARMVENALLEIPS-GLVEAARAMGATPMQIVKKV 137
Cdd:PRK10417  105 VADMFMTFPTSILAFFMVG----VLGT--GLTNVIIAIALSHWAWYARMVRSLVISLRQrEFVLAARLSGAGHVRVFIDH 178

                          90
                  ....*....|....*
gi 2293748516 138 LLPEALPGLVNAATI 152
Cdd:PRK10417  179 LLPAVIPQLLVLATL 193
BatB COG4597
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 91-143 6.05e-03

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443651 [Multi-domain]  Cd Length: 397  Bit Score: 37.05  E-value: 6.05e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2293748516  91 AAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEAL 143
Cdd:COG4597   267 ALLLALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQTLRLVVLPQAL 319
artM PRK11122
arginine ABC transporter permease ArtM;
7-161 7.32e-03

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 36.47  E-value: 7.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516   7 WLMARGVWETVMMTFVSGFFGFVIGLPVGVLLyvtrpgqIIANPALYKVLSGLVNIFRSIPFI--ILLVWMIPftrmivG 84
Cdd:PRK11122    6 PELLKGLHTSLTLTVASLLVALVLALIFTIIL-------TLKTPVLVWLVRGYITLFTGTPLLvqIFLIYYGP------G 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516  85 TSIGLQA--------------AIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKkVLLP----EALPGL 146
Cdd:PRK11122   73 QFPWLQEypwlwhllsqpwlcAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLR-ILLPyafkRALSSY 151

                         170       180
                  ....*....|....*....|....*.
gi 2293748516 147 VN-----------AATITLITLVGYS 161
Cdd:PRK11122  152 SNevvlvfkstslAYTITLMDVMGYS 177
pstA PRK11268
phosphate ABC transporter permease PstA;
9-147 9.22e-03

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 36.20  E-value: 9.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2293748516   9 MARGVWETVMMTFVSGFFGFVIGLPVGVllYVTRPGQiiaNPALYKVLSGLVNIFRSIPFII--LLVWMIPFTRMivgTS 86
Cdd:PRK11268   79 LANAIAGSGLLILWATVVGTPLGIMAGI--YLAEYGR---KSWLAEVIRFINDILLSAPSIVvgLFVYTIVVAQM---EH 150

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2293748516  87 IGLQAAIVPLTVGAAPFIARMVENALLEIPSGLVEAARAMGATPMQIVKKVLLPEALPGLV 147
Cdd:PRK11268  151 FSGWAGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIM 211
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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