NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2316072058|ref|WP_263067067|]
View 

5-oxoprolinase subunit PxpB [Halomonas sp. 7T]

Protein Classification

allophanate hydrolase subunit 1( domain architecture ID 10005226)

allophanate hydrolase subunit 1 (AHS1) converts allophanate to ammonium and carbon dioxide, and is essential for utilization of urea as a nitrogen source in bacteria

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-226 3.21e-96

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


:

Pssm-ID: 441652  Cd Length: 229  Bit Score: 280.49  E-value: 3.21e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058   1 MKLRIETAAMDALTVRLFDAIDESNMAWIIAADEALRRAFDHALIDLIPSYTTLLVHYDCQKLSFAQASTLVRSALHNLT 80
Cdd:COG2049     3 MAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLRALLAELD 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058  81 PADSQQGQLHEIPVWYDESVGPELPIVAKRAGLSVEALIERHCSHDYCVFALGFAPGYGFMGLVDEAIATPRLKTPRRRV 160
Cdd:COG2049    83 AAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRV 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2316072058 161 SAGSVGIADRQTAIYPLLSPGGWNILGRTAVPLFeHAKRGEP-LLRPGDKVRFKAISKSEFEAAEGD 226
Cdd:COG2049   163 PAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLF-DPDREPPaLLRPGDRVRFVPISEEEFDALRGE 228
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-226 3.21e-96

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 280.49  E-value: 3.21e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058   1 MKLRIETAAMDALTVRLFDAIDESNMAWIIAADEALRRAFDHALIDLIPSYTTLLVHYDCQKLSFAQASTLVRSALHNLT 80
Cdd:COG2049     3 MAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLRALLAELD 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058  81 PADSQQGQLHEIPVWYDESVGPELPIVAKRAGLSVEALIERHCSHDYCVFALGFAPGYGFMGLVDEAIATPRLKTPRRRV 160
Cdd:COG2049    83 AAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRV 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2316072058 161 SAGSVGIADRQTAIYPLLSPGGWNILGRTAVPLFeHAKRGEP-LLRPGDKVRFKAISKSEFEAAEGD 226
Cdd:COG2049   163 PAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLF-DPDREPPaLLRPGDRVRFVPISEEEFDALRGE 228
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
4-194 4.51e-79

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 235.91  E-value: 4.51e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058   4 RIETAAMDALTVRLFDAIDESNMAWIIAADEALRRAFDHALIDLIPSYTTLLVHYDCQKLSFAQASTLVRSALHNLTPAD 83
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAPLPGVVEVVPGYRSLLVHYDPLVTDLAALEARLRALLAALEAAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058  84 SQQGQLHEIPVWYDESVGPELPIVAKRAGLSVEALIERHCSHDYCVFALGFAPGYGFMGLVDEAIATPRLKTPRRRVSAG 163
Cdd:pfam02682  81 APGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVPAG 160
                         170       180       190
                  ....*....|....*....|....*....|.
gi 2316072058 164 SVGIADRQTAIYPLLSPGGWNILGRTAVPLF 194
Cdd:pfam02682 161 SVGIAGRQTGIYPLESPGGWQLIGRTPLPLF 191
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
4-194 1.09e-78

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 235.11  E-value: 1.09e-78
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058    4 RIETAAMDALTVRLFDAIDESNMAWIIAADEALRRAFDHALIDLIPSYTTLLVHYDCQKLSFAQASTLVRSAL-HNLTPA 82
Cdd:smart00796   2 RIRPAGDRALLVEFGDEIDLALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDPLVIDPAALLARLRALEaLPLAEA 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058   83 DSQQGQLHEIPVWYDESVGPELPIVAKRAGLSVEALIERHCSHDYCVFALGFAPGYGFMGLVDEAIATPRLKTPRRRVSA 162
Cdd:smart00796  82 LEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVPA 161
                          170       180       190
                   ....*....|....*....|....*....|..
gi 2316072058  163 GSVGIADRQTAIYPLLSPGGWNILGRTAVPLF 194
Cdd:smart00796 162 GSVGIAGAQTGIYPLESPGGWQLIGRTPLPLF 193
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
44-212 1.01e-39

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 135.75  E-value: 1.01e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058  44 LIDLIPSYTTLLVHYDCQKLsFAQASTLVRSALHNLTPADSQqGQLHEIPVWYDESVGPELPIVAKRAGLSVEALIERHC 123
Cdd:TIGR00370  35 FVECIPGMNNLTVFYDMYEV-YKHLPQRLSSPWEEVKDYEVN-RRIIEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHS 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058 124 SHDYCVFALGFAPGYGFMGLVDEAIATPRLKTPRRRVSAGSVGIADRQTAIYPLLSPGGWNILGRTAVPLFEHAKRGEPL 203
Cdd:TIGR00370 113 NGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVGIGGLQTGVYPISTPGGWQLIGKTPLALFDPQENPPTL 192

                  ....*....
gi 2316072058 204 LRPGDKVRF 212
Cdd:TIGR00370 193 LRAGDIVKF 201
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-226 3.21e-96

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 280.49  E-value: 3.21e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058   1 MKLRIETAAMDALTVRLFDAIDESNMAWIIAADEALRRAFDHALIDLIPSYTTLLVHYDCQKLSFAQASTLVRSALHNLT 80
Cdd:COG2049     3 MAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLRALLAELD 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058  81 PADSQQGQLHEIPVWYDESVGPELPIVAKRAGLSVEALIERHCSHDYCVFALGFAPGYGFMGLVDEAIATPRLKTPRRRV 160
Cdd:COG2049    83 AAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRV 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2316072058 161 SAGSVGIADRQTAIYPLLSPGGWNILGRTAVPLFeHAKRGEP-LLRPGDKVRFKAISKSEFEAAEGD 226
Cdd:COG2049   163 PAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLF-DPDREPPaLLRPGDRVRFVPISEEEFDALRGE 228
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
4-194 4.51e-79

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 235.91  E-value: 4.51e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058   4 RIETAAMDALTVRLFDAIDESNMAWIIAADEALRRAFDHALIDLIPSYTTLLVHYDCQKLSFAQASTLVRSALHNLTPAD 83
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAPLPGVVEVVPGYRSLLVHYDPLVTDLAALEARLRALLAALEAAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058  84 SQQGQLHEIPVWYDESVGPELPIVAKRAGLSVEALIERHCSHDYCVFALGFAPGYGFMGLVDEAIATPRLKTPRRRVSAG 163
Cdd:pfam02682  81 APGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVPAG 160
                         170       180       190
                  ....*....|....*....|....*....|.
gi 2316072058 164 SVGIADRQTAIYPLLSPGGWNILGRTAVPLF 194
Cdd:pfam02682 161 SVGIAGRQTGIYPLESPGGWQLIGRTPLPLF 191
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
4-194 1.09e-78

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 235.11  E-value: 1.09e-78
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058    4 RIETAAMDALTVRLFDAIDESNMAWIIAADEALRRAFDHALIDLIPSYTTLLVHYDCQKLSFAQASTLVRSAL-HNLTPA 82
Cdd:smart00796   2 RIRPAGDRALLVEFGDEIDLALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDPLVIDPAALLARLRALEaLPLAEA 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058   83 DSQQGQLHEIPVWYDESVGPELPIVAKRAGLSVEALIERHCSHDYCVFALGFAPGYGFMGLVDEAIATPRLKTPRRRVSA 162
Cdd:smart00796  82 LEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVPA 161
                          170       180       190
                   ....*....|....*....|....*....|..
gi 2316072058  163 GSVGIADRQTAIYPLLSPGGWNILGRTAVPLF 194
Cdd:smart00796 162 GSVGIAGAQTGIYPLESPGGWQLIGRTPLPLF 193
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
44-212 1.01e-39

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 135.75  E-value: 1.01e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058  44 LIDLIPSYTTLLVHYDCQKLsFAQASTLVRSALHNLTPADSQqGQLHEIPVWYDESVGPELPIVAKRAGLSVEALIERHC 123
Cdd:TIGR00370  35 FVECIPGMNNLTVFYDMYEV-YKHLPQRLSSPWEEVKDYEVN-RRIIEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHS 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316072058 124 SHDYCVFALGFAPGYGFMGLVDEAIATPRLKTPRRRVSAGSVGIADRQTAIYPLLSPGGWNILGRTAVPLFEHAKRGEPL 203
Cdd:TIGR00370 113 NGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVGIGGLQTGVYPISTPGGWQLIGKTPLALFDPQENPPTL 192

                  ....*....
gi 2316072058 204 LRPGDKVRF 212
Cdd:TIGR00370 193 LRAGDIVKF 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH