|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
23-1154 |
0e+00 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 1471.85 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 23 AAPVAGPQVSPVDWLLTQVRIGESTNKYELVQQSLYRLEKIDPENPQVLAARLRLALHQGDLTTAQTLLDQLNRLAPDSA 102
Cdd:PRK11447 17 LLPLAQAAPTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 103 AARESAAGLRMMSSDGRQQLQQARLLATSGRLAEAKSAYDALFNGVFPDPNIALEYWRLVARLPGQEDLAWQQLQVLEQR 182
Cdd:PRK11447 97 AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 183 YPGNVGVGLQIARMAFARQQPEQAITQLKRLAERGGGREAAADLWLQQITDQPVSDSSVAQLKAYLAVFTDGEPHQQGVD 262
Cdd:PRK11447 177 YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARS 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 263 ALSKQQSQLADPAYRDRMQALARVDAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQAGQQS 342
Cdd:PRK11447 257 QLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 343 TLIGKWQSLLQTSHYWLAIEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDG 422
Cdd:PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 423 TNITAVRRLAGLYRTVSPAREMAFIDTLPADQQRALADTIRTLRSDSLRAEADALAQQARWPQAADRYRQALALTPDDVW 502
Cdd:PRK11447 417 GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 503 LSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAAEASATLHRLPEAQWSSDMRQLADRLTQDQR 582
Cdd:PRK11447 497 LTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 583 FAEADALREAGDEPAAIALLRQQPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADNRDAALGRIEALVALQRNGEA 662
Cdd:PRK11447 577 LETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA 656
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 663 RQSLETLP-PQQSTLNADRRAALAWQAVGETTRAAALLTDLKQRAASLPPSQDKALVYRDAARLEGAQQQPEQALADYRQ 741
Cdd:PRK11447 657 RAQLAKLPaTANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 742 AMTASGIASSG-----NISRATRNDPQDDWLKRSLRSDTADLYRQQQTTLTVQQDYSRNSGTGGISDFTAHTTMLQAEHP 816
Cdd:PRK11447 737 AMVASGITPTRpqdndTFTRLTRNDEKDDWLKRGVRSDAADLYRQQDLNVTLEHDYWGSSGTGGYSDLKAHTTMLQVDAP 816
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 817 FAAGRGFFRLDRVDVSAGTFATR-NGSIDALFGSCDDAnsgGCNRDNRQRDSGTALAAGWHNATWSADLGTTPLGFEVTN 895
Cdd:PRK11447 817 LSDGRAFFRTDRVNMDAGSFSTNaDGKYDDNWGTCTLQ---DCSGNRSQSDSGASVAVGWRNDRWSWDIGTTPMGFNVVD 893
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 896 WTGGLSWKTDVKQLGVTLTASRRPIASSLLSYAGTRDPAASGGKSWGGVVATGGSIGLSYDQGGAHGVWGDISAHQITGK 975
Cdd:PRK11447 894 VVGGISYSGDIGPLGYTLNAHRRPISSSLLAFGGQKDPPSNTGTTWGGVRANGVGLSLSYDKGEANGVWASLSGDQLTGK 973
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 976 NVADNSRERLMGGYYYKLINSDNRRATVGLNSMLWHYQKDLSDYTFGQGGYYSPQQYLSFSVPVTWRQRTENWSFDLGGS 1055
Cdd:PRK11447 974 NVADNWRVRWMTGYYYKVINENNRRVTVGLNNMIWHYDKDLSGYSLGQGGYYSPQEYLSFAVPVMWRQRTENWSWELGGS 1053
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 1056 VSWSHSQTHAQQRYPV-----NPGYTLASNPSSASSSGGGTGYTLQAVIERRLTSNWFIGAGVDIQQAKDYTPSHGLLYV 1130
Cdd:PRK11447 1054 VSWSHSRTKTMPRYPLmnlipTDYQEDAADQSNDGSSSQGFGYTARALVERRLTSNWFVGTGVDIQQAKDYTPSHALLYV 1133
|
1130 1140
....*....|....*....|....
gi 2372820850 1131 RYAAGGWEGDLDMPPQPLTPYADF 1154
Cdd:PRK11447 1134 RYSAAGWQGDLDLPPQPLTPYADW 1157
|
|
| BCSC_C |
pfam05420 |
Cellulose synthase operon protein C C-terminus (BCSC_C); This family contains the C-terminal ... |
802-1133 |
3.09e-137 |
|
Cellulose synthase operon protein C C-terminus (BCSC_C); This family contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown.
Pssm-ID: 461647 Cd Length: 336 Bit Score: 418.93 E-value: 3.09e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 802 SDFTAHTTMLQAEHPFAAGRGFFRLDRVDVSAGTFATrNGSIDALFGSCDdanSGGCNRDNRQRDSGTALAAGWHNATWS 881
Cdd:pfam05420 1 SRLTEFTAPLEASFPAGDGRLFVRVTPVSLDAGTLAP-DGSALARFGTGA---LSAVRAAGSQTASGVGLALGWEGDNWK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 882 ADLGTTPLGFEVTNWTGGLSWKTDVKQLGVTLTASRRPIASSLLSYAGTRDPAAsgGKSWGGVVATGGSIGLSYDQGGAh 961
Cdd:pfam05420 77 ADIGTTPLGFDVSNVVGGVSWSGDLGDFGYTLTAERRPVTDSLLSYAGARDPVT--GKTWGGVTANGGGLGLSYDDGGA- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 962 GVWGDISAHQITGKNVADNSRERLMGGYYYKLINSDNRRATVGLNSMLWHYQKDLSDYTFGQGGYYSPQQYLSFSVPVTW 1041
Cdd:pfam05420 154 GVYASGGYHSLTGENVADNTRVEAMAGGYYRVINDPDRRLTVGLNLNYMHYDKNLSYFTYGQGGYFSPQRYVSISLPVEY 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 1042 RQRTENWSFDLGGSVSWSHSQTHAQQRYPVNPGYTLASNPSSASSSGGGTG---------YTLQAVIERRLTSNWFIGAG 1112
Cdd:pfam05420 234 AGRYGNWSYQLGGSVGYQSYREDAAPYFPTDPDLQAALASAVAGTASNASYagssgtgfgYNLRAAGEYRLSPHWFVGGA 313
|
330 340
....*....|....*....|.
gi 2372820850 1113 VDIQQAKDYTPSHGLLYVRYA 1133
Cdd:pfam05420 314 LSIDNSGDYAPSRGLLYLRYL 334
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
275-552 |
5.00e-23 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 100.19 E-value: 5.00e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 275 AYRDRMQALARVDAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQAGQQstligkwqsllqt 354
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 355 sHYWLAIEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGL 434
Cdd:COG2956 75 -RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAEL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 435 YRtvspAREMafidtlpADQQRALADTIRTLRSDSLRA---EADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGAL 511
Cdd:COG2956 154 YL----EQGD-------YDEAIEALEKALKLDPDCARAlllLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY 222
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2372820850 512 RNSGRAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAA 552
Cdd:COG2956 223 EKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEA 263
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
51-668 |
2.86e-20 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 97.08 E-value: 2.86e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 51 ELVQQSLYRLEKIDPENPQVLAARLRLALHQGDLTTAQTLLDQLNRLAPDSAAARESAAGLRMMSSDGRQQLQ---QARL 127
Cdd:TIGR02917 142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAayrKAIA 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 128 LAtsgrlaeaksaydalfngvfPDpNIALEYWRLVARLPGQE-DLAWQQLQVLEQRYPGNVGVGLQIARMAFARQQPEQA 206
Cdd:TIGR02917 222 LR--------------------PN-NIAVLLALATILIEAGEfEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDA 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 207 ITQLKRLaergggreaaadlwLQQITDQPVsdssvAQLKAYLAVFTDGEpHQQGVDALSKQQSQLADPAYRDRMQALARV 286
Cdd:TIGR02917 281 RETLQDA--------------LKSAPEYLP-----ALLLAGASEYQLGN-LEQAYQYLNQILKYAPNSHQARRLLASIQL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 287 DAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQ------------------AGQQSTLIGKW 348
Cdd:TIGR02917 341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEldpenaaartqlgisklsQGDPSEAIADL 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 349 QSLLQT------SHYWLAI--------------------EQGDKALAQH----------DIDGAEKAYRAAQAYDSSDSY 392
Cdd:TIGR02917 421 ETAAQLdpelgrADLLLILsylrsgqfdkalaaakklekKQPDNASLHNllgaiylgkgDLAKAREAFEKALSIEPDFFP 500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 393 ALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGLY-RTVSPAREMAFIDTL----PADQQRALAdTIRTLRS 467
Cdd:TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYlRTGNEEEAVAWLEKAaelnPQEIEPALA-LAQYYLG 579
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 468 DSLRAEADALAqqarwpqaadryRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALWFSG 547
Cdd:TIGR02917 580 KGQLKKALAIL------------NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAV 647
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 548 NDNAAEASATLHRlpEAQWSSDMRQLADRLTQdqrfaeadALREAGDEPAAIALLR----QQPDSSRRDLTLADWALARG 623
Cdd:TIGR02917 648 MKNYAKAITSLKR--ALELKPDNTEAQIGLAQ--------LLLAAKRTESAKKIAKslqkQHPKAALGFELEGDLYLRQK 717
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 2372820850 624 DAQQALQGYQQVLSRQAdNRDAALGRIEALVALQRNGEARQSLET 668
Cdd:TIGR02917 718 DYPAAIQAYRKALKRAP-SSQNAIKLHRALLASGNTAEAVKTLEA 761
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
32-642 |
2.00e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 94.38 E-value: 2.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 32 SPVDWLLTQVRIGESTNKYELVQQSLYRLEKIDPENPQVLAARLRLALHQGDLTTAQTLLDQLNRLAPDSAaareSAAGL 111
Cdd:TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSP----LAHYL 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 112 RMMSSDGRQQLQQARllatSGRLAEAKSAydalfngvfPDPNIALEYWRLVARLPGQEDLAWQQLQVLEQRYPGNVgvgl 191
Cdd:TIGR02917 267 KALVDFQKKNYEDAR----ETLQDALKSA---------PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSH---- 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 192 QIARMAFARQ----QPEQAITQLKRLAER----------------GGGREAAADLWLQQITDQpvsDSSVAQLKAYLAVF 251
Cdd:TIGR02917 330 QARRLLASIQlrlgRVDEAIATLSPALGLdpddpaalsllgeaylALGDFEKAAEYLAKATEL---DPENAAARTQLGIS 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 252 --TDGEPhQQGVDALsKQQSQLA-DPAYRDRMQALARVDAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVA 328
Cdd:TIGR02917 407 klSQGDP-SEAIADL-ETAAQLDpELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 329 IRWLERAIQagqqstligkwqslLQTSHYWLAIEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAP 408
Cdd:TIGR02917 485 REAFEKALS--------------IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 409 GAERFWQKARRLDGTNITAVRRLAGLYRTV-SPAREMAFIDTLPA---DQQRALA-------------DTIRTLRS---- 467
Cdd:TIGR02917 551 EAVAWLEKAAELNPQEIEPALALAQYYLGKgQLKKALAILNEAADaapDSPEAWLmlgraqlaagdlnKAVSSFKKllal 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 468 DSLRAEADALAQQARW-----PQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTAL-YAA 541
Cdd:TIGR02917 631 QPDSALALLLLADAYAvmknyAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFeLEG 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 542 ALWFSGNDNAAEASATLHRLPEAQWSSDMRQLADRLTQDQRFAEADALREagdepaaiALLRQQPDSSRRDLTLADWALA 621
Cdd:TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLE--------AWLKTHPNDAVLRTALAELYLA 782
|
650 660
....*....|....*....|.
gi 2372820850 622 RGDAQQALQGYQQVLSRQADN 642
Cdd:TIGR02917 783 QKDYDKAIKHYQTVVKKAPDN 803
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
57-669 |
2.24e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 94.38 E-value: 2.24e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 57 LYRLEKIDPENPQVLAARLRLALHQGDLTTAQTLLDQLNRLAPDSAAARESAAGLRMMSSDGRQ---QLQQArllatsgr 133
Cdd:TIGR02917 352 LSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEaiaDLETA-------- 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 134 laeAKSAYDALFNGVFpdpnIALEYWRLvarlpGQEDLAWQQLQVLEQRYPGNVGVGLQIARMAFARQQPEQAITQLKRl 213
Cdd:TIGR02917 424 ---AQLDPELGRADLL----LILSYLRS-----GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK- 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 214 aergggreaaadlwlqqitdqpvsdssvaqlkaylavftdgephqqgvdALSkqqsqlADPAYRDRMQALARVD--AGNA 291
Cdd:TIGR02917 491 -------------------------------------------------ALS------IEPDFFPAAANLARIDiqEGNP 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 292 DSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQAGQQSTligkwQSLLQTSHYWLAIEQGDKA---- 367
Cdd:TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI-----EPALALAQYYLGKGQLKKAlail 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 368 ---------------------LAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNIT 426
Cdd:TIGR02917 591 neaadaapdspeawlmlgraqLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 427 AVRRLAGLYrtvspareMAFIDTLPADQQRALADTIRTLRSDSLRAEADALAQQARWPQAADRYRQALALTPDDVWLSYr 506
Cdd:TIGR02917 671 AQIGLAQLL--------LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK- 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 507 LAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYA-AALWFSGND--NAAEASATLHRLPEAQwSSDMRQLAdRLTQDQRF 583
Cdd:TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTAlAELYLAQKDydKAIKHYQTVVKKAPDN-AVVLNNLA-WLYLELKD 819
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 584 AEADALREagdepAAIALLRQQPDSSRrdlTLAdWALA-RGDAQQALQGYQQVLSRQADNRDAALGRIEALVALQRNGEA 662
Cdd:TIGR02917 820 PRALEYAE-----RALKLAPNIPAILD---TLG-WLLVeKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890
|
....*..
gi 2372820850 663 RQSLETL 669
Cdd:TIGR02917 891 RKELDKL 897
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
280-495 |
1.42e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.40 E-value: 1.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 280 MQALARV--DAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQAGQQStligkwqsllqtSHY 357
Cdd:COG2956 79 LLELAQDylKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN------------AHA 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 358 WLaiEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGLYRT 437
Cdd:COG2956 147 YC--ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK 224
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2372820850 438 VSpaREMAFIDTLpadqQRALAdtiRTLRSDSLRAEADALAQQARWPQAADRYRQALA 495
Cdd:COG2956 225 LG--DPEEALELL----RKALE---LDPSDDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
472-743 |
2.48e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.54 E-value: 2.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 472 AEADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNA 551
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 552 AEASATLHRLPEAqwssdmrqlaDRLTQDQRFAEADALREAGDEPAAIALLRQ----QPDSSRRDLTLADWALARGDAQQ 627
Cdd:COG2956 93 DRAEELLEKLLEL----------DPDDAEALRLLAEIYEQEGDWEKAIEVLERllklGPENAHAYCELAELYLEQGDYDE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 628 ALQGYQQVLSRQADNRDAALGRIEALVALQRNGEARQSLETLPPQQ-STLNADRRAALAWQAVGETTRAAALLtdlkQRA 706
Cdd:COG2956 163 AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDpDYLPALPRLAELYEKLGDPEEALELL----RKA 238
|
250 260 270
....*....|....*....|....*....|....*..
gi 2372820850 707 ASLPPSQDKALVYrdaARLEGAQQQPEQALADYRQAM 743
Cdd:COG2956 239 LELDPSDDLLLAL---ADLLERKEGLEAALALLERQL 272
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
361-702 |
3.41e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.16 E-value: 3.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 361 IEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGLYRtvsp 440
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 441 aremafidtlpadqqraladtirtlrsdslraeadalaQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQA 520
Cdd:COG2956 88 --------------------------------------KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKA 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 521 EAVMRGVAQQHPQDSTALYaaalwfsgndnaaeasatlhrlpeaqwssdmrQLADRLTQDQRFAEA-DALREAgdepaai 599
Cdd:COG2956 130 IEVLERLLKLGPENAHAYC--------------------------------ELAELYLEQGDYDEAiEALEKA------- 170
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 600 alLRQQPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADNRDAALGRIEALVALQRNGEARQSLETLPPQQSTLNAD 679
Cdd:COG2956 171 --LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248
|
330 340
....*....|....*....|...
gi 2372820850 680 RRAALAWQAVGETTRAAALLTDL 702
Cdd:COG2956 249 LALADLLERKEGLEAALALLERQ 271
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
282-522 |
6.56e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 66.95 E-value: 6.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 282 ALARVDAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQagqqstligkwqslLQTSHYWLAI 361
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALE--------------LDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 362 EQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGLYRTVSPA 441
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 442 RE-MAFIDTLPADQQRALADTIRTLRSDSLRAEADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQA 520
Cdd:COG0457 161 EEaLELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
..
gi 2372820850 521 EA 522
Cdd:COG0457 241 YQ 242
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
276-541 |
1.55e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.48 E-value: 1.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 276 YRDRMQALARVDAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQAGQQSTLIGKWQSLLQTS 355
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 356 HYWLAIEQgdkaLAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGLY 435
Cdd:COG3914 81 LELAALLL----QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 436 RtvsparemafidtlpadqqraladtirtlrsdslraeadalaQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSG 515
Cdd:COG3914 157 R------------------------------------------RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLG 194
|
250 260
....*....|....*....|....*.
gi 2372820850 516 RAQQAEAVMRGVAQQHPQDSTALYAA 541
Cdd:COG3914 195 RLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
287-742 |
1.91e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 68.57 E-value: 1.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 287 DAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQAGQQSTLI-----------GKWQSLLQTS 355
Cdd:TIGR02917 34 QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVlpllarayllqGKFQQVLDEL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 356 --HYWLAIEQ--------GDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAerfwqkarrldgtni 425
Cdd:TIGR02917 114 pgKTLLDDEGaaellalrGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEA--------------- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 426 tavrrlaglyrtvspareMAFIDtlpadqqRALADTIRTlrSDSLRAEADALAQQARWPQAADRYRQALALTPDDVWLSY 505
Cdd:TIGR02917 179 ------------------RALID-------EVLTADPGN--VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 506 RLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALwfsgndnaaeasatLHrlpeaqwssdmrqladrlTQDQRFAE 585
Cdd:TIGR02917 232 ALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL--------------VD------------------FQKKNYED 279
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 586 AdalREagdepAAIALLRQQPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADNRDAAlgRIEALVALqRNGEARQS 665
Cdd:TIGR02917 280 A---RE-----TLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQAR--RLLASIQL-RLGRVDEA 348
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 666 LETLPPQQStLNADRRAAL-----AWQAVGETTRAAALLtdlkQRAASLPPsqDKALVYRDAARLEGAQQQPEQALADYR 740
Cdd:TIGR02917 349 IATLSPALG-LDPDDPAALsllgeAYLALGDFEKAAEYL----AKATELDP--ENAAARTQLGISKLSQGDPSEAIADLE 421
|
..
gi 2372820850 741 QA 742
Cdd:TIGR02917 422 TA 423
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
385-636 |
2.68e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.03 E-value: 2.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 385 AYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGLYRTVsparemafidtlpADQQRALADTIRT 464
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRL-------------GRYEEALADYEQA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 465 LRSDSLRAEA-----DALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALY 539
Cdd:COG0457 69 LELDPDDAEAlnnlgLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 540 AAALWFSGNDNAAEASATLHRLPEAQWSSDMRQLADRLTQDQRFAEADALREAGDEPAAIALLRQQPDSSRRDLTLADWA 619
Cdd:COG0457 149 NLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALA 228
|
250
....*....|....*..
gi 2372820850 620 LARGDAQQALQGYQQVL 636
Cdd:COG0457 229 LLLALRLAALALYQYRA 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
302-602 |
5.77e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.26 E-value: 5.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 302 LKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQAGQQSTligkwqsllqTSHYWLAIEQgdkaLAQHDIDGAEKAYR 381
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDA----------EALYNLGLAY----LRLGRYEEALADYE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 382 AAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLaglyrtvsparemafidtlpadqqraladt 461
Cdd:COG0457 67 QALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNL------------------------------ 116
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 462 irtlrsdslraeADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAA 541
Cdd:COG0457 117 ------------GLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALG 184
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2372820850 542 ALWFSGNDNAAEASATLHRLPEAQWSSDMRQLADRLTQDQRFAEADALREAGDEPAAIALL 602
Cdd:COG0457 185 EAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
272-424 |
1.93e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.82 E-value: 1.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 272 ADPAYRDRMQALARVDAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQagqqstligkwqsl 351
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALE-------------- 66
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2372820850 352 LQTSHYWLAIEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTN 424
Cdd:COG4783 67 LDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
508-751 |
2.04e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 65.01 E-value: 2.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 508 AGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAAEASATLHRLPEAQWSSDMRQLADRLTQDQRFA--- 584
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLaal 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 585 ---EADALREAGDEPAAIALLRQ----QPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADNRDAALGRIEALVALQ 657
Cdd:COG3914 81 lelAALLLQALGRYEEALALYRRalalNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 658 RNGEARQSLE---TLPPQQstLNADRRAALAWQAVGETTRAAALLtdlkQRAASLPPSQDKALVYRDAARLEGAQQQPEQ 734
Cdd:COG3914 161 RLEEAIAALRralELDPDN--AEALNNLGNALQDLGRLEEAIAAY----RRALELDPDNADAHSNLLFALRQACDWEVYD 234
|
250
....*....|....*..
gi 2372820850 735 ALADYRQAMTASGIASS 751
Cdd:COG3914 235 RFEELLAALARGPSELS 251
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
167-417 |
2.92e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 62.44 E-value: 2.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 167 GQEDLAWQQLQVLEQRYPGNVGVGLQIARMAFARQQPEQAITQLKRLAERGGGREAA----------------ADLWLQQ 230
Cdd:COG2956 22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAllelaqdylkaglldrAEELLEK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 231 ITDQPVSDSSVAQLKAYLAVFTdGEpHQQGVDALSKQQSQLADPAYRDRMQALARVDAGNADSAMRALERALKSNPGDAE 310
Cdd:COG2956 102 LLELDPDDAEALRLLAEIYEQE-GD-WEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 311 LMGAMGQIQARAGHREVAIRWLERAIQagqqstligkwqslLQTSHYWLAIEQGDKALAQHDIDGAEKAYRAAQAYDSSD 390
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALE--------------QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
|
250 260
....*....|....*....|....*..
gi 2372820850 391 SyALIGLGDVAMARNDAPGAERFWQKA 417
Cdd:COG2956 246 D-LLLALADLLERKEGLEAALALLERQ 271
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
369-645 |
3.87e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 64.24 E-value: 3.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 369 AQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGLYRTV-SPAREMAFI 447
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAaAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 448 DTLPADQQRALADTI-------RTLRSDSLRAEA-----DALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSG 515
Cdd:COG3914 81 LELAALLLQALGRYEealalyrRALALNPDNAEAlfnlgNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 516 RAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAAEASATLHR----LPE-----AQWSSDMRQLADRLTQDQRFAEA 586
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRalelDPDnadahSNLLFALRQACDWEVYDRFEELL 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2372820850 587 DALREAGDEPAAIALLRQQPDSSRRDLtladwALARGDAQQALQGYQQVLSRQADNRDA 645
Cdd:COG3914 241 AALARGPSELSPFALLYLPDDDPAELL-----ALARAWAQLVAAAAAPELPPPPNPRDP 294
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
468-742 |
5.73e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.18 E-value: 5.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 468 DSLRAEADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALwfsg 547
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGL---- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 548 ndnaaeasatlhrlpeaqwssdmrqladrltqdqrfaeadALREAGDEPAAIALLRQ----QPDSSRRDLTLADWALARG 623
Cdd:COG0457 85 ----------------------------------------ALQALGRYEEALEDYDKalelDPDDAEALYNLGLALLELG 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 624 DAQQALQGYQQVLSRQADNRDAALGRIEALVALQRNGEARQSLETLPPQQSTLNADRRAALAWQAVGETTRAAALLTDLK 703
Cdd:COG0457 125 RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALE 204
|
250 260 270
....*....|....*....|....*....|....*....
gi 2372820850 704 QRAASLPPSQDKALVYRDAARLEGAQQQPEQALADYRQA 742
Cdd:COG0457 205 QALRKKLAILTLAALAELLLLALALLLALRLAALALYQY 243
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
71-383 |
5.92e-10 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 62.24 E-value: 5.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 71 LAARLrlALHQGDLTTAQTLLDQLNRLAPDSAAAResaaglrmmssdgrqQLQQARLLATSGRLAEAKSAYDALFNGVfP 150
Cdd:COG3071 55 LAARA--AQALGDYERRDEYLAQALELAPEAELAV---------------LLTRAELLLDQGQAEQALATLEALRAGA-P 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 151 DPNIALEYWRLVARLPGQEDLAWQQLQVLEQRypgnvgvglqiarmafaRQQPEQAITQLKRLAERGGGREAAADL---- 226
Cdd:COG3071 117 RHPQVLRLLLQAYRQLGDWEELLELLPALRKH-----------------KALSAEEAQALERRAYLGLLRQAARDAealk 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 227 -WLQQITDQPVSDSSVAQlkAYLAVFTDGEPHQQGVDALSKQQSQLADPAYrdrMQALARVDAGNADSAMRALERALKSN 305
Cdd:COG3071 180 aLWKALPRAERRDPELAA--AYARALIALGDHDEAERLLREALKRQWDPRL---VRLYGRLQGGDPAKQLKRAEKWLKKH 254
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2372820850 306 PGDAELMGAMGQIQARAGHREVAIRWLERAIQAGQQStligkwqsllqTSHYWLAieqgDKALAQHDIDGAEKAYRAA 383
Cdd:COG3071 255 PNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSA-----------EAYAELA----RLLEQLGDPEEAAEHYRKA 317
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
59-338 |
7.18e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 61.28 E-value: 7.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 59 RLEKIDPENPQVLAARLRLALHQGDLTTAQTLLDQLNRLAPDSAAAresaaglrmmssdgrqQLQQARLLATSGRLAEAK 138
Cdd:COG2956 33 EALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA----------------LLELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 139 SAYDALFNgVFPDPNIALEYWRLVARLPGQEDLAWQQLQVLEQRYPGNVGVGLQIARMAFARQQPEQAITQLKRLAErgg 218
Cdd:COG2956 97 ELLEKLLE-LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALK--- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 219 greaaadlwlqqiTDQPVSDSSVAQLKAYLAvftDGEpHQQGVDALSKQQSQlaDPAYRDRMQALARV--DAGNADSAMR 296
Cdd:COG2956 173 -------------LDPDCARALLLLAELYLE---QGD-YEEAIAALERALEQ--DPDYLPALPRLAELyeKLGDPEEALE 233
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2372820850 297 ALERALKSNPGDAELMgAMGQIQARAGHREVAIRWLERAIQA 338
Cdd:COG2956 234 LLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLRR 274
|
|
| PksD |
COG3321 |
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ... |
197-707 |
4.07e-09 |
|
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442550 [Multi-domain] Cd Length: 1386 Bit Score: 61.04 E-value: 4.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 197 AFARQQ-PEQAITQLKRLAERGGGREAAADLWLQQITDQPVSDSSVAQLKAYLAVFTDGEPHQQGVDALSKQQSQLADPA 275
Cdd:COG3321 867 PFQREDaAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVALAAAAAALLALA 946
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 276 YRDRMQALARVDAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQAGQQSTLIGKWQSLLQTS 355
Cdd:COG3321 947 AAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAAAALLLAAAAAAAALLALAA 1026
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 356 HYWLAIEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGLY 435
Cdd:COG3321 1027 LLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAALALALAALAAAL 1106
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 436 RTVSPARemafiDTLPADQQRALADTIRTLRSDSLRAEADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSG 515
Cdd:COG3321 1107 LLLALLA-----ALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLLALALAL 1181
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 516 RAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAAEASATLHRLPEAQWSSDMRQLADRLTQDQRFAEADALREAGDE 595
Cdd:COG3321 1182 AAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAALAAAAAALLAALAA 1261
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 596 PAAIALLRQQPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADNRDAALGRIEALVALQRNGEARQSLETLPPQQST 675
Cdd:COG3321 1262 LALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLAAALAALAAAVAAAL 1341
|
490 500 510
....*....|....*....|....*....|..
gi 2372820850 676 LNADRRAALAWQAVGETTRAAALLTDLKQRAA 707
Cdd:COG3321 1342 ALAAAAAAAAAAAAAAAAAAALAAAAGAAAAA 1373
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
263-745 |
7.21e-09 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 60.26 E-value: 7.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 263 ALSKQQSQLADPAYRDRMQALARVDAGNADSAMRALERALKSNPGDAELMGAMGQ----IQARAGHREVAIRWLERAIQA 338
Cdd:COG3899 733 ELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNppasARAYANLGLLLLGDYEEAYEF 812
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 339 GQQSTLIGKWQSLLQTSHYWLAIEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMA-RNDAPGAERFWQKA 417
Cdd:COG3899 813 GELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAaAAAAAAALAAAAAA 892
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 418 RRLDGTNITAVRRLAGLYRTVSPAREMAFIDTLPADQQRALADTIRTLRSDSLRAEADALAQQARWPQAADRYRQALALT 497
Cdd:COG3899 893 AARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAAL 972
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 498 PDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAAEASATLHRLPEAQWSSDMRQLADRL 577
Cdd:COG3899 973 AAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAA 1052
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 578 TQDQRFAEADALREAGDEPAAIALLRQQPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADNRDAALGRIEALVALQ 657
Cdd:COG3899 1053 AAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAA 1132
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 658 RNGEARQSLETLPPQQSTLNADRRAALAWQAVGETTRAAALLTDLKQRAASLPPSQDKALVYRDAARLEGAQQQPEQALA 737
Cdd:COG3899 1133 AALLLLAAALALALAALLLLAALLLALALLLLALAALALAAALAALAAALLAAAAAAAAAAALLAALLALAARLAALLAL 1212
|
....*...
gi 2372820850 738 DYRQAMTA 745
Cdd:COG3899 1213 ALLALEAA 1220
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
282-492 |
1.26e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 56.94 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 282 ALARVDAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQagqqstligkwqslLQTSHYWLAI 361
Cdd:COG0457 49 GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALE--------------LDPDDAEALY 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 362 EQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGLYRTVSPA 441
Cdd:COG0457 115 NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAE 194
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2372820850 442 REMAFIDTLPADQQRALADTIRTLRSDSLRAEADALAQQARWPQAADRYRQ 492
Cdd:COG0457 195 VLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
294-424 |
2.26e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.86 E-value: 2.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 294 AMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQagqqstligkwqslLQTSHYWLAIEQGDKALAQHDI 373
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALR--------------LDPDNADALLDLAEALLAAGDT 67
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2372820850 374 DGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTN 424
Cdd:COG4235 68 EEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
474-561 |
1.34e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.55 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 474 ADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAAE 553
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
....*...
gi 2372820850 554 ASATLHRL 561
Cdd:COG4235 104 AIAAWQKL 111
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
468-604 |
2.50e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.96 E-value: 2.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 468 DSLRAEADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALWFSG 547
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2372820850 548 NDNAAEASATLHRLpeAQWSSDMRQLADRLtqdqrfaeADALREAGDEPAAIALLRQ 604
Cdd:COG4783 85 AGDYDEALALLEKA--LKLDPEHPEAYLRL--------ARAYRALGRPDEAIAALEK 131
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
361-534 |
2.78e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.96 E-value: 2.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 361 IEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAglyrtvsp 440
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG-------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 441 aremafidtlpadqqraladtirtlrsdslraeaDALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQA 520
Cdd:COG4783 80 ----------------------------------LALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEA 125
|
170
....*....|....
gi 2372820850 521 EAVMRGVAQQHPQD 534
Cdd:COG4783 126 IAALEKALELDPDD 139
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
277-702 |
2.89e-07 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 55.02 E-value: 2.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 277 RDRMQALARVDAgNADSAMRALERALKSNPGDA--ELMGAMGQIQARAGHREVAIRWLERAIQAGQQSTLIGKWQSLLQT 354
Cdd:COG3903 512 PDQLAWLARLDA-EHDNLRAALRWALAHGDAELalRLAAALAPFWFLRGLLREGRRWLERALAAAGEAAAALAAAAALAA 590
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 355 SHYWlaieqgdkALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGL 434
Cdd:COG3903 591 AAAA--------ARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 662
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 435 YRTVSPAREMAFIDTLPADQQRALADTIRTLRSDSLRAEADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNS 514
Cdd:COG3903 663 AAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAAAAAALLAAAAAAALAAAAAA 742
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 515 GRAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAAEASATLHRLPEAQWSSDMRQLADRLTQDQRFAEADALREAGD 594
Cdd:COG3903 743 AALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAA 822
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 595 EPAAIALLRQQPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADNRDAALGRIEALVALQRNGEARQSLETLPPQQS 674
Cdd:COG3903 823 AAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAAAAAAAAALAAAAAAAAAAAAALLAAAAAAAAAAAAAAAAA 902
|
410 420
....*....|....*....|....*...
gi 2372820850 675 TLNADRRAALAWQAVGETTRAAALLTDL 702
Cdd:COG3903 903 AALAAAAAAAAAAALAAAAAAAAAAAAA 930
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
474-602 |
5.60e-07 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 52.19 E-value: 5.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 474 ADALAQQARWPQAADRYRQALA-LTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHP----QDSTALYAAALWFSGN 548
Cdd:COG4700 96 ADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPdfksSDAHLLYARALEALGD 175
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2372820850 549 DNAAEAsatlhrlpeaqwssDMRQLADRLTQ-DQRFAEADALREAGDEPAAIALL 602
Cdd:COG4700 176 LEAAEA--------------ELEALARRYSGpEARYRYAKFLARQGRTAEAKELL 216
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
281-742 |
6.84e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.55 E-value: 6.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 281 QALARVDAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQAGqqstlIGKWQSLLQtshywla 360
Cdd:TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-----PGNVDALLL------- 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 361 ieQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAErfwqkarrldgTNITAVRRLAGlyRTVSP 440
Cdd:TIGR02917 199 --KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAE-----------KHADALLKKAP--NSPLA 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 441 AREMAFIDTLPADQQRALADTIRTLRSDSLRAEADALA-----QQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSG 515
Cdd:TIGR02917 264 HYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAgaseyQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 516 RAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAAEASATLHRLPEAQ---WSSDMRQLADRLTQ-DQRFAEADALRE 591
Cdd:TIGR02917 344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDpenAAARTQLGISKLSQgDPSEAIADLETA 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 592 AGDEP------------------------AAIALLRQQPDSSRRDLTLADWALARGDAQQALQGYQQVLS---------- 637
Cdd:TIGR02917 424 AQLDPelgradlllilsylrsgqfdkalaAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSiepdffpaaa 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 638 ------RQADNRDAALGRIEALVA-LQRNGEARQSLETLppqqSTLNADRRAALAW--QAVGETTRAAALLTDL------ 702
Cdd:TIGR02917 504 nlaridIQEGNPDDAIQRFEKVLTiDPKNLRAILALAGL----YLRTGNEEEAVAWleKAAELNPQEIEPALALaqyylg 579
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 2372820850 703 -KQRAASLPPSQDKALVYRDA-------ARLEGAQQQPEQALADYRQA 742
Cdd:TIGR02917 580 kGQLKKALAILNEAADAAPDSpeawlmlGRAQLAAGDLNKAVSSFKKL 627
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
125-731 |
7.46e-07 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 53.71 E-value: 7.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 125 ARLLATSGRLAEAKSAYDAlfngvfpdpniALEYWRLVARLPGQEDLAWQQLQVLEQRypgnvgvglqiARMAFARQQPE 204
Cdd:COG3899 705 ARLLLRAARRALARGAYAE-----------ALRYLERALELLPPDPEEEYRLALLLEL-----------AEALYLAGRFE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 205 QAItqlkRLAERGGGREAAADLWLQQITDQPVSdssvAQLKAYLAVFTDGEPHQqgvdalskqqsqladpAYRDRMQALA 284
Cdd:COG3899 763 EAE----ALLERALAARALAALAALRHGNPPAS----ARAYANLGLLLLGDYEE----------------AYEFGELALA 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 285 RVDAGNADSAMraleralksnpgdAELMGAMGQIQARAGHREVAIRWLERAIQAGQQstlIGKWQSLLQTSHYWLAIEQG 364
Cdd:COG3899 819 LAERLGDRRLE-------------ARALFNLGFILHWLGPLREALELLREALEAGLE---TGDAALALLALAAAAAAAAA 882
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 365 DKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAglyrtvspAREM 444
Cdd:COG3899 883 AAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAA--------AAAL 954
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 445 AFIDTLPADQQRALADTIRTLRSDSLRAEADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVM 524
Cdd:COG3899 955 AAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAA 1034
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 525 RGVAQQHPQDSTALYAAALWFSGNDNAAEASATLHRLPEAQWSSDMRQLADRLTQDQRFAEADALREAGDEPAAIALLRQ 604
Cdd:COG3899 1035 ALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAAL 1114
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 605 QPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADNRDAALGRIEALVALQRNGEARQSLETLPPQQSTLNADRRAAL 684
Cdd:COG3899 1115 ALAAALAALALAAAARAAAALLLLAAALALALAALLLLAALLLALALLLLALAALALAAALAALAAALLAAAAAAAAAAA 1194
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 2372820850 685 AWQAVGETTRAAALLTDLKQRAASLPPSQDKALVYRDAARLEGAQQQ 731
Cdd:COG3899 1195 LLAALLALAARLAALLALALLALEAAALLLLLLLAALALAAALLALR 1241
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
376-543 |
9.49e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.23 E-value: 9.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 376 AEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLaglyrtvsparemafidtlpadqq 455
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL------------------------ 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 456 raladtirtlrsdslraeADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDS 535
Cdd:COG4235 58 ------------------AEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
....*...
gi 2372820850 536 TALYAAAL 543
Cdd:COG4235 120 PARLLEAS 127
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
151-583 |
9.90e-07 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 53.38 E-value: 9.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 151 DPNIALEywRLVARLPGQEdlawqqlqVLEQRYPGNVGV-----GLQIARMAFARQQPE-QAITQLKRLAERGGGREAAA 224
Cdd:PRK09782 327 GQYDAAQ--KLLATLPANE--------MLEERYAVSVATrnkaeALRLARLLYQQEPANlTRLDQLTWQLMQNGQSREAA 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 225 DLWLQQITDQPVSDSSVAqLKAYLAVFTDGEPHQQGVDALSKQQSQLADPAYRDRMQALARVdAGNADSAMRALerALKS 304
Cdd:PRK09782 397 DLLLQRYPFQGDARLSQT-LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI-ADNCPAIVRLL--GDMS 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 305 NPGDAELMGAMGQIQARAGHREVAIRWLERAIQAGQQStligkwqsllqtSHYWLAIEqgdkALAQHDIDGAEKAYRAaQ 384
Cdd:PRK09782 473 PSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAW------------QHRAVAYQ----AYQVEDYATALAAWQK-I 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 385 AYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNitavrrlAGLYRTVSPARemafidTLPADQQRALADTIRT 464
Cdd:PRK09782 536 SLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-------NALYWWLHAQR------YIPGQPELALNDLTRS 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 465 L----RSDSLRAEADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYA 540
Cdd:PRK09782 603 LniapSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 2372820850 541 AALWFSGNDNAAEASATLHR-LPEAQWSSDMRQLADRLTQdQRF 583
Cdd:PRK09782 683 LAYVNQRLDDMAATQHYARLvIDDIDNQALITPLTPEQNQ-QRF 725
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
474-561 |
2.28e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 48.26 E-value: 2.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 474 ADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAAE 553
Cdd:COG4783 45 GEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
|
....*...
gi 2372820850 554 ASATLHRL 561
Cdd:COG4783 125 AIAALEKA 132
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
46-231 |
2.33e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 50.50 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 46 STNKYELVQQSLYRLEKIDPENPQVLAARLRLALHQGDLTTAQTLLDQLNRLAPDSAAAResaaglrmmssdgrqqLQQA 125
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY----------------CELA 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 126 RLLATSGRLAEAKSAYDALFNGvfpDPNIALEYWRL--VARLPGQEDLAWQQLQVLEQRYPGNVGVGLQIARMAFARQQP 203
Cdd:COG2956 152 ELYLEQGDYDEAIEALEKALKL---DPDCARALLLLaeLYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP 228
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2372820850 204 EQAITQLKRLAERG----------------GGREAAADLWLQQI 231
Cdd:COG2956 229 EEALELLRKALELDpsddlllaladllerkEGLEAALALLERQL 272
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
561-745 |
3.42e-06 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 49.88 E-value: 3.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 561 LPEAQWSSDMRQLADRLTQ--DQRFAeadaLREAGDEpAAIAllrqqpDSSRRDLTLADWALARGDAQQALQGYQQVLSR 638
Cdd:COG4700 50 LPELRNSRDARRVQRAARNalDPGRE----LRELEKA-LEFA------DTVQNRVRLADALLELGRYDEAIELYEEALTG 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 639 -QADNRDAALGRIEALVALQRNGEARQSLETLPPQQSTLNADRRA---ALAWQAVGETTRAAALLTDLKQRAASLPPSQD 714
Cdd:COG4700 119 iFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKSSDAHllyARALEALGDLEAAEAELEALARRYSGPEARYR 198
|
170 180 190
....*....|....*....|....*....|.
gi 2372820850 715 KALVYRDAARLEGAQQQPEQALADyRQAMTA 745
Cdd:COG4700 199 YAKFLARQGRTAEAKELLEEILDE-AKHMPK 228
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
360-664 |
3.80e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 50.29 E-value: 3.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 360 AIEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVR-RLAGLY--- 435
Cdd:COG3071 19 ALLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAVLlTRAELLldq 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 436 RTVSPARemAFIDTLPADQQRaladtirtlRSDSLRAEADALAQQARWPQA---ADRYRQALALTPDDVWLSYRLAGALR 512
Cdd:COG3071 99 GQAEQAL--ATLEALRAGAPR---------HPQVLRLLLQAYRQLGDWEELlelLPALRKHKALSAEEAQALERRAYLGL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 513 NSGRAQQAEAVMRgVAQQHP----QDSTALYAAALWFSGNDNAAEASATLHRLPEAQWSSDmrqLADRLTQDQRFAEADA 588
Cdd:COG3071 168 LRQAARDAEALKA-LWKALPraerRDPELAAAYARALIALGDHDEAERLLREALKRQWDPR---LVRLYGRLQGGDPAKQ 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2372820850 589 LReagdepAAIALLRQQPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADNRD-AALGRIeaLVALQRNGEARQ 664
Cdd:COG3071 244 LK------RAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAyAELARL--LEQLGDPEEAAE 312
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
356-776 |
4.44e-06 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 51.17 E-value: 4.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 356 HYWLAIEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGLY 435
Cdd:COG3903 497 YYLALAERAAAELRGPDQLAWLARLDAEHDNLRAALRWALAHGDAELALRLAAALAPFWFLRGLLREGRRWLERALAAAG 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 436 RTVSPAREMAFIDTLPADQQRALADTIRTLRSDSLRAEADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSG 515
Cdd:COG3903 577 EAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAAAAAAAAAAAAAAAA 656
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 516 RAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAAEASATLHRLPEAQWSSDMRQLADRLTQDQRFAEADALREAGDE 595
Cdd:COG3903 657 AAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAAAAAALLAAAAAAAL 736
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 596 PAAIALLRQQPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADNRDAALGRIEALVALQRNGEARQSLETLPPQQST 675
Cdd:COG3903 737 AAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAAL 816
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 676 LNADRRAALAWQAVGETTRAAALLTDLKQRAASLPPSQDKALVYRDAARLEGAQQQPEQALADYRQAMTASGIASSGNIS 755
Cdd:COG3903 817 AAAAAAAAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAAAAAAAAALAAAAAAAAAAAAALLAAAAAAAAAAA 896
|
410 420
....*....|....*....|.
gi 2372820850 756 RATRNDPQDDWLKRSLRSDTA 776
Cdd:COG3903 897 AAAAAAAALAAAAAAAAAAAL 917
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
277-780 |
7.84e-06 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 50.24 E-value: 7.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 277 RDRMQALARVDAGNADSAMRALERA----LKSNPGDAELM-----------GAMGQIQARAGHREVAiRWLERAIQAGQQ 341
Cdd:COG3899 607 LELLAAVLGLSEAELAAALEELVAAgllvPRGDAGGGRYRfrhdlvreaayASLPPEERRALHRRIA-RALEARGPEPLE 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 342 STLI---------GKWQSLLQtshywLAIEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYA------LIGLGDVAMARND 406
Cdd:COG3899 686 ERLFelahhlnraGERDRAAR-----LLLRAARRALARGAYAEALRYLERALELLPPDPEEeyrlalLLELAEALYLAGR 760
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 407 APGAERFWQKARRLDGTNITAVRRLAGLYRTVSPAREMAFIDTLPADQQRALADTIRTL---------RSDSLRAEADAL 477
Cdd:COG3899 761 FEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALaerlgdrrlEARALFNLGFIL 840
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 478 AQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALWFSgndnAAEASAT 557
Cdd:COG3899 841 HWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAA----AAALAAA 916
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 558 LHRLPEAQWSSDMRQLADRLTQDQRFAEADALREAGDEPAAIALLRQQPDSSRRDLTLADWALARGDAQQALQGYQQVLS 637
Cdd:COG3899 917 ELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAA 996
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 638 RQADNRDAALGRIEALVALQRNGEARQSLETLPPQQSTLNADRRAALAWQAVGETTRAAALLTDLKQRAASLPPSQDKAL 717
Cdd:COG3899 997 ALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAA 1076
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2372820850 718 VYRDAARLEGAQQQPEQALADYRQAMTASGIASSGNISRATRNDPQDDWLKRSLRSDTADLYR 780
Cdd:COG3899 1077 AAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLA 1139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
279-391 |
8.55e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.54 E-value: 8.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 279 RMQALARVDAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQAgqqstligkwQSLLQTSHYW 358
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL----------DPDNPEALYL 90
|
90 100 110
....*....|....*....|....*....|...
gi 2372820850 359 LAIEqgdkALAQHDIDGAEKAYRAAQAYDSSDS 391
Cdd:COG4235 91 LGLA----AFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
87-390 |
9.33e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 49.99 E-value: 9.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 87 AQTLLDQLNRLAPDSAAARESAAGLRMMSSDGRQQLQQARLLATSGRLAEAKSAYDALFNGVFPDPNIALEYWRLVARlp 166
Cdd:COG3914 14 AAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQAL-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 167 GQEDLAWQQLQVLEQRYPGNVGVGLQIARMAFARQQPEQAITQLKRLAERGGGReaaADLWLQQitdqpvsdssvaqlka 246
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDF---AEAYLNL---------------- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 247 ylavftdgephqqgvdalskqqsqladpayrdrmqALARVDAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHRE 326
Cdd:COG3914 153 -----------------------------------GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLE 197
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2372820850 327 VAIRWLERAIQ-AGQQSTLIGKWQSLLQTSHYWLAIEQGDKALAQHDIDGAEKAYRAAQAYDSSD 390
Cdd:COG3914 198 EAIAAYRRALElDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDD 262
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
415-560 |
1.01e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 415 QKARRLDGTNITAVRRLAGLYRTVSPAREMAFIDTLPADQQRALADTIRTLRSDSLRAEADALAQQARWPQAADRYRQAL 494
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2372820850 495 ALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAAEASATLHR 560
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
167-499 |
1.34e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 48.75 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 167 GQEDLAWQQLQVLEQRYPGN-VGVGLQIARMAFARQQPEQAITQLKRLAERGGGREAAADLWLQQItdqpvsdssvAQLK 245
Cdd:COG3071 64 GDYERRDEYLAQALELAPEAeLAVLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAY----------RQLG 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 246 AYLAVFtDGEPHQQGVDALSKQQ-SQLADPAYRDRMQALARvDAGNADSAMRALERALKSNPgdaELMGAMGQIQARAGH 324
Cdd:COG3071 134 DWEELL-ELLPALRKHKALSAEEaQALERRAYLGLLRQAAR-DAEALKALWKALPRAERRDP---ELAAAYARALIALGD 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 325 REVAIRWLERAIQAGQQSTLIGKWQsLLQTSHYWLAIEQGDKALAQHdidgaekayraaqaydSSDSYALIGLGDVAMAR 404
Cdd:COG3071 209 HDEAERLLREALKRQWDPRLVRLYG-RLQGGDPAKQLKRAEKWLKKH----------------PNDPDLLLALGRLCLRN 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 405 NDapgaerfWQKARRldgtnitavrrlaglyrtvsparemAFidtlpadqQRALAdtiRTLRSDSLRAEADALAQQARWP 484
Cdd:COG3071 272 QL-------WGKARE-------------------------YL--------EAALA---LRPSAEAYAELARLLEQLGDPE 308
|
330
....*....|....*
gi 2372820850 485 QAADRYRQALALTPD 499
Cdd:COG3071 309 EAAEHYRKALALALG 323
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
500-642 |
1.39e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.95 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 500 DVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAAEASATLHRLpeaqwssdMRQLADRLtq 579
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEA--------LELDPDEP-- 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2372820850 580 DQRFAEADALREAGDEPAAIALLRQ----QPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADN 642
Cdd:COG4783 73 EARLNLGLALLKAGDYDEALALLEKalklDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
37-226 |
2.22e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 47.98 E-value: 2.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 37 LLTQVRIGESTNKYELVQQSLYRLEKIDPENPQVLAARLRLALHQGDLTTAQTLLDQLNR---LAPDSAAARESAAGLRM 113
Cdd:COG3071 88 LLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKhkaLSAEEAQALERRAYLGL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 114 MS--SDGRQQLQQ-------------------ARLLATSGRLAEAKSAYDALFNgVFPDPNIALEYwrlvARLPGQEDLA 172
Cdd:COG3071 168 LRqaARDAEALKAlwkalpraerrdpelaaayARALIALGDHDEAERLLREALK-RQWDPRLVRLY----GRLQGGDPAK 242
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2372820850 173 W-QQLQVLEQRYPGNVGVGLQIARMAFARQQPEQAITQLKRLAERGGGREAAADL 226
Cdd:COG3071 243 QlKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAEL 297
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
478-746 |
2.34e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 47.98 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 478 AQQARWPQAADRY-RQALALTPDD---VWLsyRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAAE 553
Cdd:COG3071 60 AQALGDYERRDEYlAQALELAPEAelaVLL--TRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEE 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 554 ASATL-----HRLPEAQWSSDMRQLADRLTQDQRFAEADALReagdepaaiALLRQQPDSSRRD----LTLADWALARGD 624
Cdd:COG3071 138 LLELLpalrkHKALSAEEAQALERRAYLGLLRQAARDAEALK---------ALWKALPRAERRDpelaAAYARALIALGD 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 625 AQQALQGYQQVLSRQADNRdaaLGRIEALVALQRNGEARQSLETLPPQQSTlNADRRAALAWQAV--GETTRAAALLtdl 702
Cdd:COG3071 209 HDEAERLLREALKRQWDPR---LVRLYGRLQGGDPAKQLKRAEKWLKKHPN-DPDLLLALGRLCLrnQLWGKAREYL--- 281
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2372820850 703 kQRAASLPPSQDkalVYRDAARLEGAQQQPEQALADYRQAMTAS 746
Cdd:COG3071 282 -EAALALRPSAE---AYAELARLLEQLGDPEEAAEHYRKALALA 321
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
485-605 |
3.59e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 3.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 485 QAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTAL--YAAALWFSGNDNAAE-----ASAT 557
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALldLAEALLAAGDTEEAEellerALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2372820850 558 LHRLPEAQWssdmrQLADRLTQDQRFAEA----DALREAGDEPAAIALLRQQ 605
Cdd:COG4235 81 DPDNPEALY-----LLGLAAFQQGDYAEAiaawQKLLALLPADAPARLLEAS 127
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
579-707 |
4.39e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.41 E-value: 4.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 579 QDQRFAEADALREAGDEPAAIALLRQ----QPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADNRDAALGRIEALV 654
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKalelDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2372820850 655 ALQRNGEARQSLET-LPPQQSTLNADRRAALAWQAVGETTRAAALLTDLKQRAA 707
Cdd:COG4783 84 KAGDYDEALALLEKaLKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
364-500 |
4.52e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.23 E-value: 4.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 364 GDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLaglyrtvspare 443
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL------------ 91
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2372820850 444 mafidtlpadqqraladtirtlrsdslraeADALAQQARWPQAADRYRQALALTPDD 500
Cdd:COG4235 92 ------------------------------GLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
201-338 |
6.32e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.03 E-value: 6.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 201 QQPEQAITQLKRLAERGGGREAAADLWLQQITDQPvSDSSVAQLKAYLAVFTdgEPHQQGVDALSKQQSQLADPAYRDRM 280
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDP-DNPEAFALLGEILLQL--GDLDEAIVLLHEALELDPDEPEARLN 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2372820850 281 QALARVDAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQA 338
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| pgaA |
PRK10049 |
outer membrane protein PgaA; Provisional |
463-767 |
1.31e-04 |
|
outer membrane protein PgaA; Provisional
Pssm-ID: 236644 [Multi-domain] Cd Length: 765 Bit Score: 46.25 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 463 RTLRSDSLRAEADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHP---------- 532
Cdd:PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPdkanllalay 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 533 --------QDSTALYAAALWFSGNDNAAeASATLHRLPEAQWSSDMRQLAD---RLTQDQRFAEADalreAGDEPAAIAL 601
Cdd:PRK10049 125 vykragrhWDELRAMTQALPRAPQTQQY-PTEYVQALRNNRLSAPALGAIDdanLTPAEKRDLEAD----AAAELVRLSF 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 602 LRQQPDSSRrdLTLADWALARGDAQQALqgYQQVLSRQADNRDAALGRIEALVALQRNGEARQSLETLPPQQSTLN--AD 679
Cdd:PRK10049 200 MPTRSEKER--YAIADRALAQYDALEAL--WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPpwAQ 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 680 RRAALAWQAVGETTRAAALLTDLKQR---AASLPPSQDKALVYR--DAARLEGAQQQPEQALADYRQAMTASGIASSgni 754
Cdd:PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYHpetIADLSDEELADLFYSllESENYPGALTVTAHTINNSPPFLRLYGSPTS--- 352
|
330
....*....|...
gi 2372820850 755 sratrnDPQDDWL 767
Cdd:PRK10049 353 ------IPNDDWL 359
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
281-726 |
1.62e-04 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 45.73 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 281 QALARVDAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQAGQQSTLIGKWQSLLQTSHYWLA 360
Cdd:COG4995 1 LLALALLALLAALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 361 IEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGLYRTVSP 440
Cdd:COG4995 81 ALAALALALLAAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 441 AREMAFIDTLPADQQRALADTIRTLRSDSLRAEADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQA 520
Cdd:COG4995 161 AAAALLALALALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLAL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 521 EAVMRGVAQQHPQDSTALYAAALWFSGNDNAAEASATLHRLPEAQWSSDMRQLADRLTQDQRFAEADALREAGDEPAAIA 600
Cdd:COG4995 241 LALAAAAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 601 LLRQQPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADNRDAALGRIEALVALQRNGEARQSLETLPPQQSTLNADR 680
Cdd:COG4995 321 AALLLLLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAAL 400
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 2372820850 681 RAALAWQAVGETTRAAALLTDLKQRAASLPPSQDKALVYRDAARLE 726
Cdd:COG4995 401 LALAAAQLLRLLLAALALLLALAAYAAARLALLALIEYIILPDRLY 446
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
476-561 |
1.63e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 41.69 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 476 ALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQhPQDSTALYAAALWFSGNDNAAEAS 555
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLD-PNNAEALLNLAELLLELGDYDEAL 79
|
....*.
gi 2372820850 556 ATLHRL 561
Cdd:COG3063 80 AYLERA 85
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
475-577 |
1.75e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.29 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 475 DALAQQARWPQAADRYRQALALTPDDVWLS---YRLAGALRNSGRAQQAEAVMRGVAQQHPQDS---TALYAAALWFSGN 548
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPdalYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLEL 80
|
90 100 110
....*....|....*....|....*....|...
gi 2372820850 549 DNAAEASATLHRL----PEAQWSSDMRQLADRL 577
Cdd:COG1729 81 GDYDKARATLEELikkyPDSEAAKEARARLARL 113
|
|
| EntF |
COG1020 |
EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase [Secondary metabolites ... |
400-819 |
3.65e-04 |
|
EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 440643 [Multi-domain] Cd Length: 1329 Bit Score: 44.85 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 400 VAMARNDAPGAER---FWQKARRLDGTNITAVRRLAGLYRTVSPAREMAFIDTLPADQQRALADTIRTLRSDSLRAEADA 476
Cdd:COG1020 902 VVVAREDAPGDKRlvaYVVPEAGAAAAAALLRLALALLLPPYMVPAAVVLLLPLPLTGNGKLDRLALPAPAAAAAAAAAA 981
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 477 LAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAALWFSGNDNAAEASA 556
Cdd:COG1020 982 PPAEEEEEEAALALLLLLVVVVGDDDFFFFGGGLGLLLLLALARAARLLLLLLLLLLLFLAAAAAAAAAAAAAAAAAAAA 1061
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 557 TLHRLPEAQWSSDMRQLADRLTQDQRFAEADALREAGDEPAAIALLRQQPDSSRRDLTLADWALARGDAQQALQGYQQVL 636
Cdd:COG1020 1062 PLAAAAAPLPLPPLLLSLLALLLALLLLLALLALLALLLLLLLLLLLLALLLLLALLLALLAALRARRAVRQEGPRLRLL 1141
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 637 SRQADNRDAALGRIEALVALQRNGEARQSLETLPPQQSTLNADRRAALAWQAVGETTRAAALLTDLKQRAASLPPSQDKA 716
Cdd:COG1020 1142 VALAAALALAALLALLLAAAAAAAELLAAAALLLLLALLLLALLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 1221
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 717 LVYRDAARLEGAQQQPEQALADYRQAMTASGIASSGNISRATRNDPQDDWLKRSLRSDTADLYRQQQTTLTVQQDYSRNS 796
Cdd:COG1020 1222 LLLAAAAAALLALALLLALLALAALLALAALAALAAALLALALALLALALLLLALALLLPALARARAARTARALALLLLL 1301
|
410 420
....*....|....*....|...
gi 2372820850 797 GTGGISDFTAHTTMLQAEHPFAA 819
Cdd:COG1020 1302 ALLLLLALALALLLLLLLLLALL 1324
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
36-289 |
3.65e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.60 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 36 WLLTQVRIGESTNKYELVQQSLYRLEKIDPENPQVLAARLRLALHQGDLTTAQTLLDQLNRLAPDSAAAResaaglrmms 115
Cdd:COG3914 46 LLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEAL---------- 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 116 sdgrqqLQQARLLATSGRLAEAKSAYDALFNgvfPDPNIALEYWRL--VARLPGQEDLAWQQLQVLEQRYPGNVGVGLQI 193
Cdd:COG3914 116 ------FNLGNLLLALGRLEEALAALRRALA---LNPDFAEAYLNLgeALRRLGRLEEAIAALRRALELDPDNAEALNNL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 194 ARMAFARQQPEQAITQLKRLAERGGGREAAADLWL---QQITDQPVSDSSVAQLKAYLAVFTDGEP----HQQGVDALSK 266
Cdd:COG3914 187 GNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLfalRQACDWEVYDRFEELLAALARGPSELSPfallYLPDDDPAEL 266
|
250 260
....*....|....*....|....*....
gi 2372820850 267 QQ------SQLADPAYRDRMQALARVDAG 289
Cdd:COG3914 267 LAlarawaQLVAAAAAPELPPPPNPRDPD 295
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
69-216 |
3.82e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.72 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 69 QVLAARLRLALHQGDLTTAQTLLDQLNRLAPDSAAAResaaglrmmssdgrqqLQQARLLATSGRLAEAKSAYDALFNGV 148
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAF----------------ALLGEILLQLGDLDEAIVLLHEALELD 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2372820850 149 FPDPNIALEYWRLVARLpGQEDLAWQQLQVLEQRYPGNVGVGLQIARMAFARQQPEQAITQLKRLAER 216
Cdd:COG4783 69 PDEPEARLNLGLALLKA-GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
572-771 |
3.84e-04 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 44.91 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 572 QLADRLTQD-QRFAEADALREAGDEPAAIALLRQQPDSSRRD---LTLADWALARGDAQQALQGYQQVLSRQADnrDAAL 647
Cdd:PRK09782 501 QAEQRQPDAwQHRAVAYQAYQVEDYATALAAWQKISLHDMSNedlLAAANTAQAAGNGAARDRWLQQAEQRGLG--DNAL 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 648 GrieALVALQRngearqsleTLPPQQSTLNADRRAALAWQAVGETTRAAAlltDLKQRAASLPPSQDKalvYRDAARLEG 727
Cdd:PRK09782 579 Y---WWLHAQR---------YIPGQPELALNDLTRSLNIAPSANAYVARA---TIYRQRHNVPAAVSD---LRAALELEP 640
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2372820850 728 AQQQPEqalADYRQAMTASG-IASSGNI-SRATRNDPQDDWLKRSL 771
Cdd:PRK09782 641 NNSNYQ---AALGYALWDSGdIAQSREMlERAHKGLPDDPALIRQL 683
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
333-531 |
3.96e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 44.03 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 333 ERAIQAGQQSTLIGKWQSLLQTSHYWlaIEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAER 412
Cdd:PRK11788 158 QKAIDVAERLEKLGGDSLRVEIAHFY--CELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 413 FWQKARRLDGTNIT-AVRRLAGLYRTVSpaREMAFIDTLpadqQRALAdtiRTLRSDSLRAEADALAQQARWPQAADRYR 491
Cdd:PRK11788 236 ALERVEEQDPEYLSeVLPKLMECYQALG--DEAEGLEFL----RRALE---EYPGADLLLALAQLLEEQEGPEAAQALLR 306
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2372820850 492 QALALTPD----DVWLSYRLAGAlrNSGRAQQAEAVMRGVAQQH 531
Cdd:PRK11788 307 EQLRRHPSlrgfHRLLDYHLAEA--EEGRAKESLLLLRDLVGEQ 348
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
281-337 |
4.83e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.77 E-value: 4.83e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2372820850 281 QALARVDAGNADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQ 337
Cdd:cd24142 6 KAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIE 62
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
482-542 |
6.17e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 39.10 E-value: 6.17e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2372820850 482 RWPQAADRYRQALALTPDDVWLSYRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAAA 542
Cdd:pfam14559 3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
367-435 |
7.11e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.77 E-value: 7.11e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2372820850 367 ALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFwQKARRLDGTNITAVRRLAGLY 435
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELL 69
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
48-186 |
9.21e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.56 E-value: 9.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 48 NKYELVQQSLYRLEKIDPENPQVLAARLRLALHQGDLTTAQTLLDQLNRLAPDSAAAResaaglrmmssdgrqqLQQARL 127
Cdd:COG4783 18 GDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEAR----------------LNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2372820850 128 LATSGRLAEAKSAYDALFNGVFPDPNIALEYWRLVARLpGQEDLAWQQLQVLEQRYPGN 186
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL-GRPDEAIAALEKALELDPDD 139
|
|
| PGA_TPR_OMP |
TIGR03939 |
poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA; Members of this protein family are the ... |
461-730 |
1.24e-03 |
|
poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA; Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats.
Pssm-ID: 274868 [Multi-domain] Cd Length: 800 Bit Score: 43.11 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 461 TIRTLRSDSLRAEADALAQQARWPQAADRYRQALALTP--DDVWLSYRLAGA-LRNSGRAQQ--AEAVMRG--------- 526
Cdd:TIGR03939 80 SPVGLPARVLEALAKAYRNEKQWDKALELYRKLLQRDPnnPDGLLGLALTLAdAGKDAEALKylKEYVARFptdaaryea 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 527 ---VAQQHPQDSTALYAAALWFSGNDNAAEASATLHRL------PEAQwSSDMRQLADRLTQ-DQRFAEADalreagdep 596
Cdd:TIGR03939 160 layVLRAAEDHLDALQAWQQALTLEPDNPEAALELYRIltrlgaPPAA-ARLAKQYPDLFTPeDQRWLEHD--------- 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 597 AAIALLRQQPDSSRRD---LTLADWALARGDAQQALQGYQqvlsRQADNRDAALGRIEALVALQRNGEARQSLETLPPQQ 673
Cdd:TIGR03939 230 QAAELVRLGENPSRSEkerFAIADRALADLQALLDKWGPQ----ANPLYRRARIDRLGALLVRKRYAEVIREYESLEAEG 305
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2372820850 674 STLN--ADRRAALAWQAVGETTRAAALLTDLKQRA---ASLPPSQDKALVYRDAARLEGAQQ 730
Cdd:TIGR03939 306 QPLPpyAQEAVADAYLALRQPEKALPIYRELAAAEpadNNLELTIKLFYAYLEAEQYDEAQA 367
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
465-543 |
1.32e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 465 LRSDSLRAEADALAQQARWPQAADRYRQALALTPDDVWLS---YRLAGALRNSGRAQQAEAVMRGVAQQHPQDSTALYAA 541
Cdd:COG1729 28 LAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdalLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEAR 107
|
..
gi 2372820850 542 AL 543
Cdd:COG1729 108 AR 109
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
613-743 |
1.44e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.18 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 613 LTLADWALARGDAQQALQGYQQVLSRQADNRDAALGRIEALVALQRNGEARQSLE---TLPPQQStlNADRRAALAWQAV 689
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHealELDPDEP--EARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2372820850 690 GETTRAAALLtdlkQRAASLPPSQdkALVYRDAARLEGAQQQPEQALADYRQAM 743
Cdd:COG4783 86 GDYDEALALL----EKALKLDPEH--PEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
572-758 |
1.46e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.76 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 572 QLADRLTQDQRFAEA-----DALREAGDEPAAIALLR----QQPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADN 642
Cdd:TIGR02917 44 QLKNALQKDPNDAEArfllgKIYLALGDYAAAEKELRkalsLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEG 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 643 RDAALG-RIEALVALQRNGEARQSLETLPPQQSTlNADRRAALAWQAVGETTRAAALltDLKQRAASLPPSQDKALVYRd 721
Cdd:TIGR02917 124 AAELLAlRGLAYLGLGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALAENRFDEAR--ALIDEVLTADPGNVDALLLK- 199
|
170 180 190
....*....|....*....|....*....|....*..
gi 2372820850 722 aARLEGAQQQPEQALADYRQAMTASGIASSGNISRAT 758
Cdd:TIGR02917 200 -GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAT 235
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
528-667 |
2.00e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.33 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 528 AQQHPQDSTALYAAALWFSGNDNAAEASATLHRLPEAQWSSDMRQLADRLTQDQRFAEADALREAGDEPAAIALLRQ--- 604
Cdd:COG5010 3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQalq 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2372820850 605 -QPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADNRDAALGRIEALVALQRNGEARQSLE 667
Cdd:COG5010 83 lDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
222-373 |
2.02e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.33 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 222 AAADLWLQQITDQPVSDSSVAQLKAYLAVFTDGEPHQQGVDALSKQQSQLADPAYRDRMQALARVDAGNADSAMRALERA 301
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2372820850 302 LKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQAGQQSTLI--GKWQSLLQTSHYWLAIEQGDKALAQHDI 373
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAysNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
57-182 |
2.54e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 41.02 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 57 LYR--LEKIDPENPQVLAARLRLALHQGDLTTAQTLLDQLNRLAPDSAAaresaaglrmmssdGRQQLQQARLLATSGRL 134
Cdd:COG4700 111 LYEeaLTGIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKS--------------SDAHLLYARALEALGDL 176
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2372820850 135 AEAKSAYDALfNGVFPDPNIALEYWRLVARLpGQEDLAWQQLQVLEQR 182
Cdd:COG4700 177 EAAEAELEAL-ARRYSGPEARYRYAKFLARQ-GRTAEAKELLEEILDE 222
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
623-673 |
2.62e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.56 E-value: 2.62e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 2372820850 623 GDAQQALQGYQQVLSRQADNRDAALGRIEALVALQRNGEARQSLETLPPQQ 673
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAAD 52
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
309-436 |
2.82e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.56 E-value: 2.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 309 AELMGAMGQIQARAGHREVAIRWLERAIQAGQQSTLIGKWQSLLQTSHYWLAIEQGDKALAQHDIDGAEKAYRAAQAYDS 388
Cdd:COG5010 6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2372820850 389 SDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGLYR 436
Cdd:COG5010 86 NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
474-515 |
3.15e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 36.30 E-value: 3.15e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2372820850 474 ADALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRNSG 515
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
50-496 |
3.73e-03 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 41.49 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 50 YELVQQSLYRLEKIDPENPQVLAARLRLALHQGDLTTAQTLLDQLNRLAPDSAAARESAAGLRMMSSDGRQQLQQARLLA 129
Cdd:COG4995 8 ALLAALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 130 TSGRLAEAKSAYDALFNGVFPDPNIALEYWRLVARLPGQEDLAWQQLQVLEQRYPGNVGVGLQIARMAFARQQPEQAITQ 209
Cdd:COG4995 88 ALLAAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 210 LKRLAERGGGREAAADLWLQQITDQPVSDSSVAQLKAYLAVFTDGEPHQQGVDALSKQQSQLADPAYRDRMQALARVDAG 289
Cdd:COG4995 168 LALALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 290 NADSAMRALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQAGQQSTLIGKWQSLLQTSHYWLAIEQGDKALA 369
Cdd:COG4995 248 AALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLL 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 370 QHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGLYRTVSPAREMAFIDT 449
Cdd:COG4995 328 AALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQ 407
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 2372820850 450 LPADQQRALAdtiRTLRSDSLRAEADALAQQARWPQAADRYRQALAL 496
Cdd:COG4995 408 LLRLLLAALA---LLLALAAYAAARLALLALIEYIILPDRLYAFVQL 451
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
267-338 |
4.00e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 4.00e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2372820850 267 QQSQLADPAYRDRMQALARV--DAGNADSAMrALERALKSNPGDAELMGAMGQIQARAGHREVAIRWLERAIQA 338
Cdd:COG3063 16 EKALELDPDNADALNNLGLLllEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALEL 88
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
582-746 |
4.24e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 40.48 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 582 RFAEADALREAGDEPAAIALLRQ--QPDSSRRD--LTLADWALARGDAQQALQGYQQVLSRQADNRDAALGRIEALVALQ 657
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEalELDPETVEahLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 658 RNGEARQSLETL-PPQQSTLNADRRAALAWQAVGETTRAAALLTDLKQRAASLPPSQ-DKALVYRDAARLEGAQQQPEQA 735
Cdd:COG2956 91 LLDRAEELLEKLlELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYcELAELYLEQGDYDEAIEALEKA 170
|
170
....*....|.
gi 2372820850 736 LADYRQAMTAS 746
Cdd:COG2956 171 LKLDPDCARAL 181
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
359-534 |
5.35e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.90 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 359 LAIEQGDKALAQHDIDGAEKAYRAAQAYDSSDSYALIGLGDVAMARNDAPGAERFWQKARRLDGTNITAVRRLAGLYRtv 438
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYE-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 439 spaREMAFIDTlpADQQRALADTIRTLRSDSLRAEA-----DALAQQARWPQAADRYRQALALTPDDVWLSYRLAGALRN 513
Cdd:COG4785 79 ---RGVAYDSL--GDYDLAIADFDQALELDPDLAEAynnrgLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153
|
170 180
....*....|....*....|.
gi 2372820850 514 SGRAQQAEAVMRGVAQQHPQD 534
Cdd:COG4785 154 LGRYELAIADLEKALELDPND 174
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
587-669 |
8.91e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.28 E-value: 8.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 587 DALREAGDEPAAIALLRQ----QPDSSRRD---LTLADWALARGDAQQALQGYQQVLSRQADNR---DAALGRIEALVAL 656
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAflkrYPNSPLAPdalYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLEL 80
|
90
....*....|...
gi 2372820850 657 QRNGEARQSLETL 669
Cdd:COG1729 81 GDYDKARATLEEL 93
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
318-421 |
9.82e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.69 E-value: 9.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2372820850 318 IQARAGHREVAIRWLERAIQAGQQStligkwqSLLQTSHYWLAIEQGDKALAQhdidgaekAYRAAQAYDSSDSYALIGL 397
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDN-------ADALNNLGLLLLEQGRYDEAI--------ALEKALKLDPNNAEALLNL 65
|
90 100
....*....|....*....|....
gi 2372820850 398 GDVAMARNDAPGAERFWQKARRLD 421
Cdd:COG3063 66 AELLLELGDYDEALAYLERALELD 89
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
602-667 |
9.87e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.68 E-value: 9.87e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2372820850 602 LRQQPDSSRRDLTLADWALARGDAQQALQGYQQVLSRQADNRDAALGRIEALVALQRNGEARQSLE 667
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLE 75
|
|
| |
