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Conserved domains on  [gi|2427571481|ref|WP_270553708|]
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RnfABCDGE type electron transport complex subunit B [Cloacibacillus evryensis]

Protein Classification

RnfABCDGE type electron transport complex subunit B( domain architecture ID 11482575)

RnfABCDGE type electron transport complex subunit B is part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
1-281 7.50e-104

Fe-S cluster domain-containing protein;


:

Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 303.78  E-value: 7.50e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481   1 MDGIIYPTIVMGGLGVIFGCMLAFASQKFHVEVDQRQTDIRALLPGANCGGCGFPGCDGYAEACVSGAAKPNKCVAASPE 80
Cdd:PRK07118    1 MNMILFAVLSLGALGLVFGILLAFASKKFAVEEDPRVEAVREVLPGANCGGCGYPGCDGYAEAVVNGDAPPNLCPVGGAE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481  81 VSASIAEILGVSAEAAEPMVAFVKCRGSFDKTVKDCVYQGAHDCReAAVVPGRGPSSCAYGCMGFGTCEKVCAFGAIKIV 160
Cdd:PRK07118   81 VAEKVAEILGKEAAESEPKVAVVRCQGTCDKAKERYEYQGIKDCA-AAALLFGGPKGCSYGCLGLGSCVAACPFDAIHIE 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 161 DGLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQVACGNPLKGPFVKKVCSVGCIGCTLCVKACPKEAIEMKGSLAVI 240
Cdd:PRK07118  160 NGLPVVDEDKCTGCGACVKACPRNVIELIPKSARVFVACNSKDKGKAVKKVCEVGCIGCGKCVKACPAGAITMENNLAVI 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 2427571481 241 APAKCVNCGLCTQKCPVKAITDARPPRPAPAQKPAGEATAE 281
Cdd:PRK07118  240 DQEKCTSCGKCVEKCPTKAIRILNKPPKVKEPKKAAAEAAA 280
 
Name Accession Description Interval E-value
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
1-281 7.50e-104

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 303.78  E-value: 7.50e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481   1 MDGIIYPTIVMGGLGVIFGCMLAFASQKFHVEVDQRQTDIRALLPGANCGGCGFPGCDGYAEACVSGAAKPNKCVAASPE 80
Cdd:PRK07118    1 MNMILFAVLSLGALGLVFGILLAFASKKFAVEEDPRVEAVREVLPGANCGGCGYPGCDGYAEAVVNGDAPPNLCPVGGAE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481  81 VSASIAEILGVSAEAAEPMVAFVKCRGSFDKTVKDCVYQGAHDCReAAVVPGRGPSSCAYGCMGFGTCEKVCAFGAIKIV 160
Cdd:PRK07118   81 VAEKVAEILGKEAAESEPKVAVVRCQGTCDKAKERYEYQGIKDCA-AAALLFGGPKGCSYGCLGLGSCVAACPFDAIHIE 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 161 DGLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQVACGNPLKGPFVKKVCSVGCIGCTLCVKACPKEAIEMKGSLAVI 240
Cdd:PRK07118  160 NGLPVVDEDKCTGCGACVKACPRNVIELIPKSARVFVACNSKDKGKAVKKVCEVGCIGCGKCVKACPAGAITMENNLAVI 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 2427571481 241 APAKCVNCGLCTQKCPVKAITDARPPRPAPAQKPAGEATAE 281
Cdd:PRK07118  240 DQEKCTSCGKCVEKCPTKAIRILNKPPKVKEPKKAAAEAAA 280
RnfB COG2878
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and ...
 1-261 3.93e-85

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 442125 [Multi-domain]  Cd Length: 254  Bit Score: 255.30  E-value: 3.93e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481   1 MDGIIYPTIVMGGLGVIFGCMLAFASQKFHVEVDQRQTDIRALLPGANCGGCGFPGCDGYAEACVSGAAKPNKCVAASPE 80
Cdd:COG2878     1 MSTILIAVLVLGGLGLVFGLILGYASKKFKVEEDPRVEEIDALLPGANCGQCGYPGCRPYAEAIAEGEAPINLCPPGGAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481  81 VSASIAEILGVSAEAAEPMVAFVKCRGSFDKTVKDCVYQGAHDCREAAVVpgrGPSSCAYGCMGFGTCEKVCAFGAIKIV 160
Cdd:COG2878    81 VAEKLAELLGVEAGPLDPEVAVVRCNGGCEKAKPKYEYDGIKDCRAAVIG---GPKGCEYGCIGCGDCIKACPFDAIVGA 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 161 -DGLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQVAcgNPLKGPFVKKVcsVGCIGCtLCVKACPKEAIEMKGSLAV 239
Cdd:COG2878   158 aKGMHTVDEDKCTGCGLCVEACPVDCIEMVPVSPTVVVS--SWDKGKAVRKV--VGCIGL-CCKKCCPAAAITVNNLAAI 232

                         250       260
                  ....*....|....*....|..
gi 2427571481 240 IAPAKCVNCGLCTQKCPVKAIT 261
Cdd:COG2878   233 IDYKKCTCCGCCEKCCPTAIIA 254
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 135-260 5.56e-26

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 99.39  E-value: 5.56e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 135 PSSCAYGCMGFGTCEKVCAFGAIKIVDGLA-----VVDRERCVGCGACAEECPRGVIALIPRKSKIQVACGNplkgpfvK 209
Cdd:cd10549     1 LKYDPEKCIGCGICVKACPTDAIELGPNGAiargpEIDEDKCVFCGACVEVCPTGAIELTPEGKEYVPKEKE-------A 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2427571481 210 KVCSVGCIGCTLCVKACPKEAIEMK-GSLAVIAPAKCVNCGLCTQKCPVKAI 260
Cdd:cd10549    74 EIDEEKCIGCGLCVKVCPVDAITLEdELEIVIDKEKCIGCGICAEVCPVNAI 125
rnfB TIGR01944
electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in ...
 3-233 1.07e-19

electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273887 [Multi-domain]  Cd Length: 165  Bit Score: 83.69  E-value: 1.07e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481   3 GIIYPTIVMGGLGVIFGCMLAFASQKFHVEVDQRQTDIRALLPGANCGGCGFPGCDGYAEACVSGAAkPNKCVAASPEVS 82
Cdd:TIGR01944   1 MIIAAVAALSALGLALGAILGYAARRFPVEADPIVEEIDALLPQTQCGQCGYPGCRPYAEAIAEGEA-INKCPPGGEAVI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481  83 ASIAEILGVSAEAAEpmvafvkcrgsfdktvkdcvYQGAHDCREAAVVpgrgpsscaygcmgfgtcekvcafgaikivdg 162
Cdd:TIGR01944  80 LALAELLGVEPIPQP--------------------LDADAGTIQPPMV-------------------------------- 107

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2427571481 163 lAVVDRERCVGCGACAEECPRGVIALIPRkskiqvacgnplkgpFVKKVCSVGCIGCTLCVKACPKEAIEM 233
Cdd:TIGR01944 108 -ALIDEDNCIGCTKCIQACPVDAIVGAAK---------------AMHTVIADECTGCDLCVEPCPTDCIEM 162
FeS pfam04060
Putative Fe-S cluster; This family includes a domain with four conserved cysteines that ...
 44-75 1.85e-08

Putative Fe-S cluster; This family includes a domain with four conserved cysteines that probably form an Fe-S redox cluster.


Pssm-ID: 461150 [Multi-domain]  Cd Length: 33  Bit Score: 49.35  E-value: 1.85e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2427571481  44 LPGANCGGCGFPGCDGYAEACVSGAAKPNKCV 75
Cdd:pfam04060   1 LPGTNCGACGYPGCRAFAEAVVAGEAKINDCP 32
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 216-260 5.04e-07

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 49.47  E-value: 5.04e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2427571481 216 CIGCTLCVKACPKEAIEMKGSLAVIApAKCVNCGLCTQKCPVKAI 260
Cdd:NF038196  187 CIGCGICAKVCPVNNIEMEDGKPVWG-HNCTHCLACIHRCPKEAI 230
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 169-234 1.48e-03

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 39.07  E-value: 1.48e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2427571481 169 ERCVGCGACAEECPRGVIALIPRKSKIQvacGNplkgpfvkkvcsvgCIGCTLCVKACPKEAIEMK 234
Cdd:NF038196  185 DKCIGCGICAKVCPVNNIEMEDGKPVWG---HN--------------CTHCLACIHRCPKEAIEYG 233
 
Name Accession Description Interval E-value
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
1-281 7.50e-104

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 303.78  E-value: 7.50e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481   1 MDGIIYPTIVMGGLGVIFGCMLAFASQKFHVEVDQRQTDIRALLPGANCGGCGFPGCDGYAEACVSGAAKPNKCVAASPE 80
Cdd:PRK07118    1 MNMILFAVLSLGALGLVFGILLAFASKKFAVEEDPRVEAVREVLPGANCGGCGYPGCDGYAEAVVNGDAPPNLCPVGGAE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481  81 VSASIAEILGVSAEAAEPMVAFVKCRGSFDKTVKDCVYQGAHDCReAAVVPGRGPSSCAYGCMGFGTCEKVCAFGAIKIV 160
Cdd:PRK07118   81 VAEKVAEILGKEAAESEPKVAVVRCQGTCDKAKERYEYQGIKDCA-AAALLFGGPKGCSYGCLGLGSCVAACPFDAIHIE 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 161 DGLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQVACGNPLKGPFVKKVCSVGCIGCTLCVKACPKEAIEMKGSLAVI 240
Cdd:PRK07118  160 NGLPVVDEDKCTGCGACVKACPRNVIELIPKSARVFVACNSKDKGKAVKKVCEVGCIGCGKCVKACPAGAITMENNLAVI 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 2427571481 241 APAKCVNCGLCTQKCPVKAITDARPPRPAPAQKPAGEATAE 281
Cdd:PRK07118  240 DQEKCTSCGKCVEKCPTKAIRILNKPPKVKEPKKAAAEAAA 280
RnfB COG2878
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and ...
 1-261 3.93e-85

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 442125 [Multi-domain]  Cd Length: 254  Bit Score: 255.30  E-value: 3.93e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481   1 MDGIIYPTIVMGGLGVIFGCMLAFASQKFHVEVDQRQTDIRALLPGANCGGCGFPGCDGYAEACVSGAAKPNKCVAASPE 80
Cdd:COG2878     1 MSTILIAVLVLGGLGLVFGLILGYASKKFKVEEDPRVEEIDALLPGANCGQCGYPGCRPYAEAIAEGEAPINLCPPGGAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481  81 VSASIAEILGVSAEAAEPMVAFVKCRGSFDKTVKDCVYQGAHDCREAAVVpgrGPSSCAYGCMGFGTCEKVCAFGAIKIV 160
Cdd:COG2878    81 VAEKLAELLGVEAGPLDPEVAVVRCNGGCEKAKPKYEYDGIKDCRAAVIG---GPKGCEYGCIGCGDCIKACPFDAIVGA 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 161 -DGLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQVAcgNPLKGPFVKKVcsVGCIGCtLCVKACPKEAIEMKGSLAV 239
Cdd:COG2878   158 aKGMHTVDEDKCTGCGLCVEACPVDCIEMVPVSPTVVVS--SWDKGKAVRKV--VGCIGL-CCKKCCPAAAITVNNLAAI 232

                         250       260
                  ....*....|....*....|..
gi 2427571481 240 IAPAKCVNCGLCTQKCPVKAIT 261
Cdd:COG2878   233 IDYKKCTCCGCCEKCCPTAIIA 254
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 135-260 5.56e-26

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 99.39  E-value: 5.56e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 135 PSSCAYGCMGFGTCEKVCAFGAIKIVDGLA-----VVDRERCVGCGACAEECPRGVIALIPRKSKIQVACGNplkgpfvK 209
Cdd:cd10549     1 LKYDPEKCIGCGICVKACPTDAIELGPNGAiargpEIDEDKCVFCGACVEVCPTGAIELTPEGKEYVPKEKE-------A 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2427571481 210 KVCSVGCIGCTLCVKACPKEAIEMK-GSLAVIAPAKCVNCGLCTQKCPVKAI 260
Cdd:cd10549    74 EIDEEKCIGCGLCVKVCPVDAITLEdELEIVIDKEKCIGCGICAEVCPVNAI 125
rnfB TIGR01944
electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in ...
 3-233 1.07e-19

electron transport complex, RnfABCDGE type, B subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273887 [Multi-domain]  Cd Length: 165  Bit Score: 83.69  E-value: 1.07e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481   3 GIIYPTIVMGGLGVIFGCMLAFASQKFHVEVDQRQTDIRALLPGANCGGCGFPGCDGYAEACVSGAAkPNKCVAASPEVS 82
Cdd:TIGR01944   1 MIIAAVAALSALGLALGAILGYAARRFPVEADPIVEEIDALLPQTQCGQCGYPGCRPYAEAIAEGEA-INKCPPGGEAVI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481  83 ASIAEILGVSAEAAEpmvafvkcrgsfdktvkdcvYQGAHDCREAAVVpgrgpsscaygcmgfgtcekvcafgaikivdg 162
Cdd:TIGR01944  80 LALAELLGVEPIPQP--------------------LDADAGTIQPPMV-------------------------------- 107

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2427571481 163 lAVVDRERCVGCGACAEECPRGVIALIPRkskiqvacgnplkgpFVKKVCSVGCIGCTLCVKACPKEAIEM 233
Cdd:TIGR01944 108 -ALIDEDNCIGCTKCIQACPVDAIVGAAK---------------AMHTVIADECTGCDLCVEPCPTDCIEM 162
PRK05113 PRK05113
electron transport complex protein RnfB; Provisional
 1-233 1.38e-19

electron transport complex protein RnfB; Provisional


Pssm-ID: 235347 [Multi-domain]  Cd Length: 191  Bit Score: 84.23  E-value: 1.38e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481   1 MDGIIYPTIVMGGLGVIFGCMLAFASQKFHVEVDQRQTDIRALLPGANCGGCGFPGCDGYAEAcVSGAAKPNKCVAASPE 80
Cdd:PRK05113    1 MSAIWIAVAALSLLALVFGAILGFASRRFKVEGDPIVEKIDAILPQSQCGQCGYPGCRPYAEA-IANGEKINKCPPGGEA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481  81 VSASIAEILGVSaeaAEPMvafvkcrgsfdktvkdcvyqgahDCREAAVVPGRgpsscaygcmgfgtceKVcafgaikiv 160
Cdd:PRK05113   80 TMLKLAELLGVE---PQPL-----------------------DGEAQEATPAR----------------KV--------- 108

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2427571481 161 dglAVVDRERCVGCGACAEECPrgVIALIPrkskiqvacgnplKGPFVKKVCSVGCIGCTLCVKACPKEAIEM 233
Cdd:PRK05113  109 ---AFIDEDNCIGCTKCIQACP--VDAIVG-------------ATKAMHTVISDLCTGCDLCVAPCPTDCIEM 163
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 165-261 7.15e-14

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 67.04  E-value: 7.15e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 165 VVDRERCVGCGACAEECPRGVIALIPRKSKIQVACGNPLKgpfvkkvcsvgCIGCTLCVKACPKEAIEMKGSL------- 237
Cdd:cd10549     2 KYDPEKCIGCGICVKACPTDAIELGPNGAIARGPEIDEDK-----------CVFCGACVEVCPTGAIELTPEGkeyvpke 70

                          90       100
                  ....*....|....*....|....*.
gi 2427571481 238 --AVIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:cd10549    71 keAEIDEEKCIGCGLCVKVCPVDAIT 96
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
149-262 1.58e-12

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 66.97  E-value: 1.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 149 EKVCAFGAIKIVDGLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQVACGNPLKGPFVKkvcsvgCIGCTLCVKACPK 228
Cdd:COG4624    32 IILEALLPEHVDDDSACSCCPRCCLCCCCCCRCCVAISCIQVRGIIIIDKRGPSIIRDKEK------CKNCYPCVRACPV 105

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2427571481 229 EAIEMKGSLAVIAPAKCVNCGLCTQKCPVKAITD 262
Cdd:COG4624   106 KAIKVDDGKAEIDEEKCISCGQCVAVCPFGAITE 139
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 216-267 9.94e-12

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 59.29  E-value: 9.94e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2427571481 216 CIGCTLCVKACPKEAIEMKGSLAVIAPAKCVNCGLCTQKCPVKAITDARPPR 267
Cdd:COG2221    17 CIGCGLCVAVCPTGAISLDDGKLVIDEEKCIGCGACIRVCPTGAIKGEKPKK 68
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 216-261 1.75e-11

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 58.90  E-value: 1.75e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2427571481 216 CIGCTLCVKACPKEAIEMKGSLAVIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:COG4231    24 CTGCGACVKVCPADAIEEGDGKAVIDPDLCIGCGSCVQVCPVDAIK 69
PRK13795 PRK13795
hypothetical protein; Provisional
 213-264 7.66e-11

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 62.32  E-value: 7.66e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2427571481 213 SVGCIGCTLCVKACPKEAIEMKGSLAVIA--PAKCVNCGLCTQKCPVKAITDAR 264
Cdd:PRK13795  580 AAECVGCGVCVGACPTGAIRIEEGKRKISvdEEKCIHCGKCTEVCPVVKYKDKR 633
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
216-261 1.23e-10

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 56.28  E-value: 1.23e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2427571481 216 CIGCTLCVKACPKEAIEMKGSLAVIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:COG2768    13 CIGCGACVKVCPVGAISIEDGKAVIDPEKCIGCGACIEVCPVGAIK 58
HycB COG1142
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];
148-231 4.35e-10

Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];


Pssm-ID: 440757 [Multi-domain]  Cd Length: 138  Bit Score: 56.59  E-value: 4.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 148 CEKVCAFGAIKIVDGLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQV----ACGNPLKGPfvkkvcsvgcigctLCV 223
Cdd:COG1142    60 CAEVCPVGAITRDDGAVVVDEEKCIGCGLCVLACPFGAITMVGEKSRAVAvkcdLCGGREGGP--------------ACV 125


                  ....*...
gi 2427571481 224 KACPKEAI 231
Cdd:COG1142   126 EACPTGAL 133
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
142-195 4.88e-10

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 54.74  E-value: 4.88e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2427571481 142 CMGFGTCEKVCAFGAIKIVDGLAVVDRERCVGCGACAEECPRGVIALIPRKSKI 195
Cdd:COG2768    13 CIGCGACVKVCPVGAISIEDGKAVIDPEKCIGCGACIEVCPVGAIKIEWEEDEE 66
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 142-192 6.54e-10

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 54.35  E-value: 6.54e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2427571481 142 CMGFGTCEKVCAFGAIKIVDGLA-VVDRERCVGCGACAEECPRGVIALIPRK 192
Cdd:COG1149    13 CIGCGLCVEVCPEGAIKLDDGGApVVDPDLCTGCGACVGVCPTGAITLEERE 64
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 216-261 7.44e-10

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 53.98  E-value: 7.44e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2427571481 216 CIGCTLCVKACPKEAIEM----KGSLAVIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:COG1143     4 CIGCGLCVRVCPVDAITIedgePGKVYVIDPDKCIGCGLCVEVCPTGAIS 53
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
142-188 1.02e-09

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 58.72  E-value: 1.02e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2427571481 142 CMGFGTCEKVCAFGAIKIV-DGLAVVDRERCVGCGACAEECPRGVIAL 188
Cdd:COG1148   498 CTGCGRCVEVCPYGAISIDeKGVAEVNPALCKGCGTCAAACPSGAISL 545
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 127-192 1.06e-09

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 53.52  E-value: 1.06e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2427571481 127 AAVVPGRGPSSCAYGCMGFGTCEKVCAFGAIKIVDGLAVVDRERCVGCGACAEECPRGVIAL-IPRK 192
Cdd:COG2221     2 YGIIGTWPPKIDEEKCIGCGLCVAVCPTGAISLDDGKLVIDEEKCIGCGACIRVCPTGAIKGeKPKK 68
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 164-239 1.55e-09

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 53.51  E-value: 1.55e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2427571481 164 AVVDRERCVGCGACAEECPRGVIALIPRKSKIqvacgNPLKgpfvkkvcsvgCIGCTLCVKACPKEAIEMKGSLAV 239
Cdd:COG4231    17 YVIDEDKCTGCGACVKVCPADAIEEGDGKAVI-----DPDL-----------CIGCGSCVQVCPVDAIKLEKRVPE 76
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
164-235 1.65e-09

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 58.33  E-value: 1.65e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2427571481 164 AVVDRERCVGCGACAEECPRGVIALIPRKsKIQVacgNPLKgpfvkkvcsvgCIGCTLCVKACPKEAIEMKG 235
Cdd:COG1148   491 AEVDPEKCTGCGRCVEVCPYGAISIDEKG-VAEV---NPAL-----------CKGCGTCAAACPSGAISLKG 547
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 216-261 1.86e-09

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 53.52  E-value: 1.86e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2427571481 216 CIGCTLCVKACPKEAIEM-KGSLAVIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:COG1144    32 CIGCGLCWIVCPDGAIRVdDGKYYGIDYDYCKGCGICAEVCPVKAIE 78
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 164-235 1.92e-09

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 52.79  E-value: 1.92e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2427571481 164 AVVDRERCVGCGACAEECPRGVIALIPRKSKIQVAcgNPLKgpfvkkvcsvgCIGCTLCVKACPKEAIEMKG 235
Cdd:COG1146     3 PVIDTDKCIGCGACVEVCPVDVLELDEEGKKALVI--NPEE-----------CIGCGACELVCPVGAITVED 61
DMSOR_beta_like cd10550
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 148-232 3.83e-09

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319872 [Multi-domain]  Cd Length: 130  Bit Score: 53.73  E-value: 3.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 148 CEKVCAFGAIKI--VDGLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQvacgnplkgpfvkkVCSVgCIGCTLCVKA 225
Cdd:cd10550    57 CVEACPVGAISRdeETGAVVVDEDKCIGCGMCVEACPFGAIRVDPETGKAI--------------KCDL-CGGDPACVKV 121


                  ....*..
gi 2427571481 226 CPKEAIE 232
Cdd:cd10550   122 CPTGALE 128
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 216-261 4.09e-09

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 52.04  E-value: 4.09e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2427571481 216 CIGCTLCVKACPKEAIEM-KGSLAVIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:COG1149    13 CIGCGLCVEVCPEGAIKLdDGGAPVVDPDLCTGCGACVGVCPTGAIT 59
PRK06991 PRK06991
electron transport complex subunit RsxB;
40-233 4.89e-09

electron transport complex subunit RsxB;


Pssm-ID: 235903 [Multi-domain]  Cd Length: 270  Bit Score: 55.96  E-value: 4.89e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481  40 IRALLPGANCGGCGFPGCDGYAEACVSGAAKPNKCVAASPEVSASIAEILGVsaeaaePMVAFVKCRGsfdktvkdcvyq 119
Cdd:PRK06991   11 IEDLLPQTQCTKCGYDGCRPYAEAIAAGEANYNRCPPGGAEGIARLAALLGK------PVIPLDPANG------------ 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 120 gahdcreaavVPGRGPsscaygcmgfgtcekvcafgaikivdgLAVVDRERCVGCGACAEECPRGVIALIPRKskiqvac 199
Cdd:PRK06991   73 ----------VERPRA---------------------------VAVIDEQLCIGCTLCMQACPVDAIVGAPKQ------- 108

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2427571481 200 gnplkgpfVKKVCSVGCIGCTLCVKACPKEAIEM 233
Cdd:PRK06991  109 --------MHTVLADLCTGCDLCVPPCPVDCIDM 134
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
142-197 7.25e-09

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 56.19  E-value: 7.25e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2427571481 142 CMGFGTCEKVCAFGAIKIVDGLAVVDRERCVGCGACAEECPRGviALIPRKSKIQV 197
Cdd:COG4624    93 CKNCYPCVRACPVKAIKVDDGKAEIDEEKCISCGQCVAVCPFG--AITEKSDIEKV 146
DMSOR_beta-like cd04410
Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta ...
 165-260 7.66e-09

Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319870 [Multi-domain]  Cd Length: 136  Bit Score: 53.16  E-value: 7.66e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 165 VVDRERCVGCGACAEECP-RGVIALIPRKSKIQVACGNPLKGPFVKKVcsvgCIGCT--LCVKACPKEAIEM-KGSLAVI 240
Cdd:cd04410     2 VVDLDRCIGCGTCEVACKqEHGLRPGPDWSRIKVIEGGGLERAFLPVS----CMHCEdpPCVKACPTGAIYKdEDGIVLI 77

                          90       100
                  ....*....|....*....|
gi 2427571481 241 APAKCVNCGLCTQKCPVKAI 260
Cdd:cd04410    78 DEDKCIGCGSCVEACPYGAI 97
DMSOR_beta_like cd16372
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 142-260 1.05e-08

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319894 [Multi-domain]  Cd Length: 125  Bit Score: 52.34  E-value: 1.05e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 142 CMGFGTCEKVCAF----------GAIKIVDGLAVVDRERCVGCGACAEECPRGVIalipRKSKIQVACGNPLKgpfvkkv 211
Cdd:cd16372    10 CIGCLQCEEACSKtffkeedrekSCIRITETEGGYAINVCNQCGECIDVCPTGAI----TRDANGVVMINKKL------- 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2427571481 212 csvgCIGCTLCVKACPKEAieMKGSLAVIAPAKCVNCGLCTQKCPVKAI 260
Cdd:cd16372    79 ----CVGCLMCVGFCPEGA--MFKHEDYPEPFKCIACGICVKACPTGAL 121
HycB COG1142
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];
165-261 1.56e-08

Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];


Pssm-ID: 440757 [Multi-domain]  Cd Length: 138  Bit Score: 52.35  E-value: 1.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 165 VVDRERCVGCGACAEECP--RGVIALIPRKSKIQVACGNPLKGPfvkkvcsVGCIGCTL--CVKACPKEAIEMKGSLAVI 240
Cdd:COG1142     6 IADPEKCIGCRTCEAACAvaHEGEEGEPFLPRIRVVRKAGVSAP-------VQCRHCEDapCAEVCPVGAITRDDGAVVV 78

                          90       100
                  ....*....|....*....|.
gi 2427571481 241 APAKCVNCGLCTQKCPVKAIT 261
Cdd:COG1142    79 DEEKCIGCGLCVLACPFGAIT 99
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
205-261 1.74e-08

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 55.25  E-value: 1.74e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2427571481 205 GPFVKKVCSVGCIGCTLCVKACPKEAIEMKGSL-AVIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:COG1148   487 EPSVAEVDPEKCTGCGRCVEVCPYGAISIDEKGvAEVNPALCKGCGTCAAACPSGAIS 544
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
161-246 1.75e-08

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 50.50  E-value: 1.75e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 161 DGLAVVDRERCVGCGACAEECPRGVIALIPRKSKIqvacgNPLKgpfvkkvcsvgCIGCTLCVKACPKEAIEMKGSLAVI 240
Cdd:COG2768     3 LGKPYVDEEKCIGCGACVKVCPVGAISIEDGKAVI-----DPEK-----------CIGCGACIEVCPVGAIKIEWEEDEE 66


                  ....*.
gi 2427571481 241 APAKCV 246
Cdd:COG2768    67 FQEKMA 72
FeS pfam04060
Putative Fe-S cluster; This family includes a domain with four conserved cysteines that ...
 44-75 1.85e-08

Putative Fe-S cluster; This family includes a domain with four conserved cysteines that probably form an Fe-S redox cluster.


Pssm-ID: 461150 [Multi-domain]  Cd Length: 33  Bit Score: 49.35  E-value: 1.85e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2427571481  44 LPGANCGGCGFPGCDGYAEACVSGAAKPNKCV 75
Cdd:pfam04060   1 LPGTNCGACGYPGCRAFAEAVVAGEAKINDCP 32
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 164-234 2.45e-08

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 49.73  E-value: 2.45e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2427571481 164 AVVDRERCVGCGACAEECPRGVIALIPRKsKIQVacgNPLKgpfvkkvcsvgCIGCTLCVKACPKEAIEMK 234
Cdd:COG1149     6 PVIDEEKCIGCGLCVEVCPEGAIKLDDGG-APVV---DPDL-----------CTGCGACVGVCPTGAITLE 61
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 142-188 2.57e-08

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 51.63  E-value: 2.57e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2427571481 142 CMGFGTCEKVCAFGAIKIVDGL-AVVDRERCVGCGACAEECPRGVIAL 188
Cdd:cd10549    80 CIGCGLCVKVCPVDAITLEDELeIVIDKEKCIGCGICAEVCPVNAIKL 127
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
163-261 2.59e-08

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 54.43  E-value: 2.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 163 LAVVDRERCVgcgacaeecprgvialiPRKskiqvacgnplkgpfvkkvCSvgcigcTLCVKACP-----KEAIEMKGSL 237
Cdd:PRK13409    4 IAVVDYDRCQ-----------------PKK-------------------CN------YECIKYCPvvrtgEETIEIDEDD 41

                          90       100
                  ....*....|....*....|....*.
gi 2427571481 238 --AVIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:PRK13409   42 gkPVISEELCIGCGICVKKCPFDAIS 67
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 216-261 2.98e-08

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 49.71  E-value: 2.98e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2427571481 216 CIGCTLCVKACPKEAIEMKGSLA---VIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:COG1146    10 CIGCGACVEVCPVDVLELDEEGKkalVINPEECIGCGACELVCPVGAIT 58
PRK05888 PRK05888
NADH-quinone oxidoreductase subunit NuoI;
216-261 4.16e-08

NADH-quinone oxidoreductase subunit NuoI;


Pssm-ID: 235637 [Multi-domain]  Cd Length: 164  Bit Score: 51.81  E-value: 4.16e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2427571481 216 CIGCTLCVKACPKEAIEMKGSLAV----------IAPAKCVNCGLCTQKCPVKAIT 261
Cdd:PRK05888   60 CIACKLCAAICPADAITIEAAEREdgrrrttrydINFGRCIFCGFCEEACPTDAIV 115
NapF COG1145
Ferredoxin [Energy production and conversion];
84-261 4.26e-08

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 52.80  E-value: 4.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481  84 SIAEILGVSAEAAEPMVAFVKCRGSFDKTVKDCVYQGAHDCREAAVVPGRGPSSCAYGCMGFGTCEKVCAFGAIKIVDGL 163
Cdd:COG1145    52 GILAKEAFDALKDVLGILGAIVIGIGAGEIVRVGIAAADLNLKAVALVLLLALAVAGAAKRLIISAVKLVAGLVVAAGEV 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 164 AVVDRERCVGCGACAEECPRGVIALIPRKSKIQVACGNPLKGPFVKKVCSVGCIGCTLCVKACPKEAIEMK--GSLAVIA 241
Cdd:COG1145   132 LLVIAAALAEAGLAILGAAAPVDALAISGGKKIEEELKIAIKKAKAVIDAEKCIGCGLCVKVCPTGAIRLKdgKPQIVVD 211

                         170       180
                  ....*....|....*....|
gi 2427571481 242 PAKCVNCGLCTQKCPVKAIT 261
Cdd:COG1145   212 PDKCIGCGACVKVCPVGAIS 231
DMSOR_beta-like cd04410
Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta ...
 148-233 4.46e-08

Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319870 [Multi-domain]  Cd Length: 136  Bit Score: 50.85  E-value: 4.46e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 148 CEKVCAFGAIKIV-DGLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQ--VACGNPLKGPFVkkvcsvgcigcTLCVK 224
Cdd:cd04410    58 CVKACPTGAIYKDeDGIVLIDEDKCIGCGSCVEACPYGAIVFDPEPGKAVkcDLCGDRLDEGLE-----------PACVK 126


                  ....*....
gi 2427571481 225 ACPKEAIEM 233
Cdd:cd04410   127 ACPTGALTF 135
PRK13795 PRK13795
hypothetical protein; Provisional
 139-182 8.10e-08

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 53.07  E-value: 8.10e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2427571481 139 AYGCMGFGTCEKVCAFGAIKIVDGLA--VVDRERCVGCGACAEECP 182
Cdd:PRK13795  580 AAECVGCGVCVGACPTGAIRIEEGKRkiSVDEEKCIHCGKCTEVCP 625
CdhE COG1456
CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production ...
 39-114 8.22e-08

CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion];


Pssm-ID: 441065 [Multi-domain]  Cd Length: 442  Bit Score: 52.72  E-value: 8.22e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2427571481  39 DIRALLPGANCGGCGFPGCDGYAEACVSGAAKPNKCvaasPEVSASIAEILGvsaEAAEPMVAFVKCrGSFDKTVK 114
Cdd:COG1456     7 EIYKLLPKTNCKECGEPTCMAFAMKLAKGKAKLEDC----PPLSEEALEKLE---EALAPPIREVKI-GTGDKAVK 74
PRK06273 PRK06273
ferredoxin; Provisional
 209-260 8.95e-08

ferredoxin; Provisional


Pssm-ID: 235764 [Multi-domain]  Cd Length: 165  Bit Score: 50.86  E-value: 8.95e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2427571481 209 KKVCSVGCIGCTLCVKACPKEAIEM-------------KGSLAVIAPAKCVNCGLCTQKCPVKAI 260
Cdd:PRK06273   44 KKVFEELCIGCGGCANVCPTKAIEMipvepvkitegyvKTKIPKIDYEKCVYCLYCHDFCPVFAL 108
NapF_like cd10564
NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, ...
 142-261 9.66e-08

NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319886 [Multi-domain]  Cd Length: 139  Bit Score: 49.93  E-value: 9.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 142 CMGFGTCEKVCAFGAIKI-VDGLAVVDRER--CVGCGACAEECPRGVIAL-----IPRKSKIQVACgNPLKGpfvkkvcs 213
Cdd:cd10564    15 CTRCGDCVEACPEGIIVRgDGGFPELDFSRgeCTFCGACAEACPEGALDPareapWPLRAEIGDSC-LALQG-------- 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2427571481 214 vgcIGCTLCVKACPKEAIEMKGSLA-----VIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:cd10564    86 ---VECRSCQDACPTQAIRFRPRLGgialpELDADACTGCGACVSVCPVGAIT 135
DMSOR_beta_like cd16370
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 163-260 1.15e-07

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319892 [Multi-domain]  Cd Length: 131  Bit Score: 49.58  E-value: 1.15e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 163 LAVVDRERCVGCGACAEECPRGVIALI-PRKSKIQVACGNPLKGPFVKKVcsvgCIGCTL--CVKACPKEAIEM-KGSLA 238
Cdd:cd16370     3 LRVKDMERCIGCYSCMLACSRRVHKSAsLSKSAIRVRTRGGLEGGFTVVV----CRACEDppCAEACPTGALEPrKGGGV 78

                          90       100
                  ....*....|....*....|..
gi 2427571481 239 VIAPAKCVNCGLCTQKCPVKAI 260
Cdd:cd16370    79 VLDKEKCIGCGNCVKACIVGAI 100
FDH_b_like cd10562
uncharacterized subfamily of beta subunit of formate dehydrogenase; This subfamily includes ...
 140-232 1.34e-07

uncharacterized subfamily of beta subunit of formate dehydrogenase; This subfamily includes the beta-subunit of formate dehydrogenases that are as yet uncharacterized. Members of the DMSO reductase family include formate dehydrogenase N and O (FDH-N, FDH-O) and tungsten-containing formate dehydrogenase (W-FDH) and other similar proteins. FDH-N, a major component of nitrate respiration of Escherichia coli, is involved in the major anaerobic respiratory pathway in the presence of nitrate, catalyzing the oxidation of formate to carbon dioxide at the expense of nitrate reduction to nitrite. It forms a heterotrimer; the alpha-subunit (FDH-G) is the catalytic site of formate oxidation and membrane-associated, incorporating a selenocysteine (SeCys) residue and a [4Fe/4S] cluster in addition to two bis-MGD cofactors, the beta subunit (FDH-H) contains four [4Fe/4S] clusters which transfer the electrons from the alpha subunit to the gamma-subunit (FDH-I), a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. W-FDH contains a tungsten instead of molybdenum at the catalytic center. This enzyme seems to be exclusively found in organisms such as hyperthermophilic archaea that live in extreme environments. It is a heterodimer of a large and a small subunit; the large subunit harbors the W site and one [4Fe-4S] center and the small subunit, containing three [4Fe-4S] clusters, functions to transfer electrons.


Pssm-ID: 319884 [Multi-domain]  Cd Length: 161  Bit Score: 49.99  E-value: 1.34e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 140 YGCM--GFGTCEKVCAFGAIKIVD-GLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQvacgnplkgpfvkkvcsvGC 216
Cdd:cd10562    68 RQCMhcTDAACVKVCPTGALYKTEnGAVVVDEDKCIGCGYCVAACPFDVPRYDETTNKIT------------------KC 129

                          90       100
                  ....*....|....*....|....*
gi 2427571481 217 IGC---------TLCVKACPKEAIE 232
Cdd:cd10562   130 TLCfdriengmqPACVKTCPTGALT 154
SIMIBI_bact_arch cd03110
bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily ...
 142-248 1.91e-07

bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily of SIMIBI superfamily. Proteins in this superfamily contain an ATP-binding domain and use energy from hydrolysis of ATP to transfer electron or ion. The specific function of this family is unknown.


Pssm-ID: 349764 [Multi-domain]  Cd Length: 246  Bit Score: 50.85  E-value: 1.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 142 CMGFGTCEKVCAFGAIKIVDGLAVVDRERCVGCGACAEECPRGVIALIPRKSKiQVACGNPLKGPFVKKVCSVGCIGCTL 221
Cdd:cd03110    66 CIRCGNCERVCKFGAILEFFQKLIVDESLCEGCGACVIICPRGAIYLKDRDTG-KIFISSSDGGPLVHGRLNIGEENSGK 144

                          90       100
                  ....*....|....*....|....*....
gi 2427571481 222 CVKACPKEAIEM--KGSLAVIAPAKCVNC 248
Cdd:cd03110   145 LVTELRKKALERskECDLAIIDGPPGTGC 173
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 168-234 2.05e-07

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 47.43  E-value: 2.05e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2427571481 168 RERCVGCGACAEECPRGVIALIPRKSKIQVAcGNPLKgpfvkkvcsvgCIGCTLCVKACPKEAIEMK 234
Cdd:COG1143     1 EDKCIGCGLCVRVCPVDAITIEDGEPGKVYV-IDPDK-----------CIGCGLCVEVCPTGAISMT 55
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 165-234 2.26e-07

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 47.35  E-value: 2.26e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 165 VVDRERCVGCGACAEECPRGVIALIPRKSKIQVACgnplkgpfvkkvcsvgCIGCTLCVKACPKEAIEMK 234
Cdd:COG2221    11 KIDEEKCIGCGLCVAVCPTGAISLDDGKLVIDEEK----------------CIGCGACIRVCPTGAIKGE 64
HybA COG0437
Fe-S-cluster-containing dehydrogenase component (DMSO reductase) [Energy production and ...
 148-233 2.45e-07

Fe-S-cluster-containing dehydrogenase component (DMSO reductase) [Energy production and conversion];


Pssm-ID: 440206 [Multi-domain]  Cd Length: 184  Bit Score: 49.94  E-value: 2.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 148 CEKVCAFGAIKI-VDGLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQVacgnplkgpfvkkvcsvgCIGC------- 219
Cdd:COG0437    68 CVKVCPTGATYKrEDGIVLVDYDKCIGCRYCVAACPYGAPRFNPETGVVEK------------------CTFCadrldeg 129

                          90
                  ....*....|....*.
gi 2427571481 220 --TLCVKACPKEAIEM 233
Cdd:COG0437   130 llPACVEACPTGALVF 145
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 165-234 2.73e-07

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 47.35  E-value: 2.73e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 165 VVDRERCVGCGACAEECPRGVIALIPRKsKIQVacgNPLKgpfvkkvcsvgCIGCTLCVKACPKEAIEMK 234
Cdd:COG1144    26 VVDEDKCIGCGLCWIVCPDGAIRVDDGK-YYGI---DYDY-----------CKGCGICAEVCPVKAIEMV 80
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 216-260 3.04e-07

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 48.18  E-value: 3.04e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2427571481 216 CIGCTLCVKACPKEAIEM--------KGSLAV--IAPAKCVNCGLCTQKCPVKAI 260
Cdd:TIGR01971  45 CIGCTLCAAVCPADAIRVvpaegedgKRRLKFyeINFGRCIFCGLCEEACPTDAI 99
NapH COG0348
Polyferredoxin NapH [Energy production and conversion];
166-234 3.60e-07

Polyferredoxin NapH [Energy production and conversion];


Pssm-ID: 440117 [Multi-domain]  Cd Length: 263  Bit Score: 50.45  E-value: 3.60e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2427571481 166 VDRERCVGCGACAEECPRGviaLIPRKskiqvacgnplkgpfvKKVCSVGCIGCTLCVKACPKEAIEMK 234
Cdd:COG0348   207 YDRGDCIDCGLCVKVCPMG---IDIRK----------------GEINQSECINCGRCIDACPKDAIRFS 256
FrhG TIGR03294
coenzyme F420 hydrogenase, subunit gamma; This model represents that clade of F420-dependent ...
 142-183 3.74e-07

coenzyme F420 hydrogenase, subunit gamma; This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.


Pssm-ID: 132337 [Multi-domain]  Cd Length: 228  Bit Score: 49.85  E-value: 3.74e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2427571481 142 CMGFGTCEKVCAFGAIKIVDGLAVVDRERCVGCGACAEECPR 183
Cdd:TIGR03294 176 CMGCGTCAAACPTRAIEMEDGRPNVNRDRCIKCGACYVQCPR 217
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 142-186 3.96e-07

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 46.57  E-value: 3.96e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2427571481 142 CMGFGTCEKVCAFGAIKIVDGLAVVDRERCVGCGACAEECPRGVI 186
Cdd:COG4231    24 CTGCGACVKVCPADAIEEGDGKAVIDPDLCIGCGSCVQVCPVDAI 68
PsrB cd10551
polysulfide reductase beta (PsrB) subunit; This family includes the beta subunit of bacterial ...
 148-231 4.03e-07

polysulfide reductase beta (PsrB) subunit; This family includes the beta subunit of bacterial polysulfide reductase (PsrABC), an integral membrane-bound enzyme responsible for quinone-coupled reduction of polysulfides, a process important in extreme environments such as deep-sea vents and hot springs. Polysulfide reductase contains three subunits: a catalytic subunit PsrA, an electron transfer PsrB subunit and the hydrophobic transmembrane PsrC subunit. PsrB belongs to the DMSO reductase superfamily that contains [4Fe-4S] clusters which transfer the electrons from the A subunit to the hydrophobic integral membrane C subunit via the B subunit. In Shewanella oneidensis, which has highly diverse anaerobic respiratory pathways, PsrABC is responsible for H2S generation as well as its regulation via respiration of sulfur species. PsrB transfers electrons from PsrC (serving as quinol oxidase) to the catalytic subunit PsrA for reduction of corresponding electron acceptors. It has been shown that T. thermophilus polysulfide reductase could be a key energy-conserving enzyme of the respiratory chain, using polysulfide as the terminal electron acceptor and pumping protons across the membrane.


Pssm-ID: 319873 [Multi-domain]  Cd Length: 185  Bit Score: 49.07  E-value: 4.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 148 CEKVCAFGAI-KIVDGLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQVACGNPLKGPfVKKvcsvgcigCTL----- 221
Cdd:cd10551    61 CVKVCPTGATyKREDGIVLVDYDKCIGCRYCMAACPYGARYFNPEEPHEFGEVPVRPKGV-VEK--------CTFcyhrl 131

                          90
                  ....*....|....*..
gi 2427571481 222 -------CVKACPKEAI 231
Cdd:cd10551   132 degllpaCVEACPTGAR 148
DMSOR_beta_like cd16372
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 146-234 4.22e-07

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319894 [Multi-domain]  Cd Length: 125  Bit Score: 48.10  E-value: 4.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 146 GTCEKVCAFGAIKI-VDGLAVVDRERCVGCGACAEECPRGVIALIPRKSkiqvacgNPLKgpfvkkvcsvgCIGCTLCVK 224
Cdd:cd16372    53 GECIDVCPTGAITRdANGVVMINKKLCVGCLMCVGFCPEGAMFKHEDYP-------EPFK-----------CIACGICVK 114

                          90
                  ....*....|
gi 2427571481 225 ACPKEAIEMK 234
Cdd:cd16372   115 ACPTGALELV 124
NapF COG1145
Ferredoxin [Energy production and conversion];
88-234 4.40e-07

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 49.72  E-value: 4.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481  88 ILGVSAEAAEPMVAFVKCRGSFDKTVKDCVYQGAHDCREAAVVPGRGPSSCAYGCMGFGTCEKVCAFGAIKIVDGLAVVD 167
Cdd:COG1145   101 LLALAVAGAAKRLIISAVKLVAGLVVAAGEVLLVIAAALAEAGLAILGAAAPVDALAISGGKKIEEELKIAIKKAKAVID 180

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2427571481 168 RERCVGCGACAEECPRGVIALIPRKSKIQVACGNplkgpfvkkvcsvgCIGCTLCVKACPKEAIEMK 234
Cdd:COG1145   181 AEKCIGCGLCVKVCPTGAIRLKDGKPQIVVDPDK--------------CIGCGACVKVCPVGAISLE 233
PRK08348 PRK08348
NADH-plastoquinone oxidoreductase subunit; Provisional
 162-233 4.85e-07

NADH-plastoquinone oxidoreductase subunit; Provisional


Pssm-ID: 181399 [Multi-domain]  Cd Length: 120  Bit Score: 47.52  E-value: 4.85e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2427571481 162 GLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQVACGNplkgpfvkkvcsvgCIGCTLCVKACPKEAIEM 233
Cdd:PRK08348   35 GKILYDVDKCVGCRMCVTVCPAGVFVYLPEIRKVALWTGR--------------CVFCGQCVDVCPTGALQM 92
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 216-260 5.04e-07

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 49.47  E-value: 5.04e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2427571481 216 CIGCTLCVKACPKEAIEMKGSLAVIApAKCVNCGLCTQKCPVKAI 260
Cdd:NF038196  187 CIGCGICAKVCPVNNIEMEDGKPVWG-HNCTHCLACIHRCPKEAI 230
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 142-192 5.73e-07

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 46.58  E-value: 5.73e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2427571481 142 CMGFGTCEKVCAFGAIKIVDG-LAVVDRERCVGCGACAEECPRGVIALIPRK 192
Cdd:COG1144    32 CIGCGLCWIVCPDGAIRVDDGkYYGIDYDYCKGCGICAEVCPVKAIEMVPEE 83
HycB_like cd10554
HycB, HydN and similar proteins; This family includes HycB, the FeS subunit of a ...
 148-233 8.73e-07

HycB, HydN and similar proteins; This family includes HycB, the FeS subunit of a membrane-associated formate hydrogenlyase system (FHL-1) in Escherichia coli that breaks down formate, produced during anaerobic fermentation, to H2 and CO2. FHL-1 consists of formate dehydrogenase H (FDH-H) and the hydrogenase 3 complex (Hyd-3). HycB is thought to code for the [4Fe-4S] ferredoxin subunit of hydrogenase 3, which functions as an intermediate electron carrier protein between hydrogenase 3 and formate dehydrogenase. HydN codes for the [4Fe-4S] ferredoxin subunit of FDH-H; a hydN in-frame deletion mutation causes only weak reduction in hydrogenase activity, but loss of more than 60% of FDH-H activity. This pathway is only active at low pH and high formate concentrations, and is thought to provide a detoxification/de-acidification system countering the buildup of formate during fermentation.


Pssm-ID: 319876 [Multi-domain]  Cd Length: 149  Bit Score: 47.64  E-value: 8.73e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 148 CEKVCAFGAIKIVDGLAVVDRERCVGCGACAEECPRGVIALIPRkSKIQVACGNPLKGPFVK-KVCSVGCIGCtLCVKAC 226
Cdd:cd10554    64 CANVCPVGAISQEDGVVQVDEERCIGCKLCVLACPFGAIEMAPT-TVPGVDWERGPRAVAVKcDLCAGREGGP-ACVEAC 141


                  ....*..
gi 2427571481 227 PKEAIEM 233
Cdd:cd10554   142 PTKALTL 148
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 169-233 1.38e-06

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 46.25  E-value: 1.38e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2427571481 169 ERCVGCGACAEECPRGVIALIPRKSKIQVacgnplKGPFVKKVCSVGCIGCTLCVKACPKEAIEM 233
Cdd:TIGR01971  43 EKCIGCTLCAAVCPADAIRVVPAEGEDGK------RRLKFYEINFGRCIFCGLCEEACPTDAIVL 101
Rli1 COG1245
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ...
 163-261 1.70e-06

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440858 [Multi-domain]  Cd Length: 592  Bit Score: 49.01  E-value: 1.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 163 LAVVDRERCVgcgacaeecprgvialiPRKskiqvaCGnplkgpfvkkvcsvgcigcTLCVKACP-----KEAIEM--KG 235
Cdd:COG1245     4 IAVVDRDRCQ-----------------PKK------CN-------------------YECIKYCPvnrtgKEAIEIdeDD 41

                          90       100
                  ....*....|....*....|....*.
gi 2427571481 236 SLAVIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:COG1245    42 GKPVISEELCIGCGICVKKCPFDAIS 67
DMSOR_beta_like cd10550
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 165-261 2.58e-06

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319872 [Multi-domain]  Cd Length: 130  Bit Score: 45.65  E-value: 2.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 165 VVDRERCVGCGACAEECP---RGVIAliPRKSKIQVacgnpLKGPFVKKVCSVGCIGCT--LCVKACPKEAIEM--KGSL 237
Cdd:cd10550     2 VVDPEKCTGCRTCELACSlkhEGVFN--PSLSRIRV-----VRFEPEGLDVPVVCRQCEdaPCVEACPVGAISRdeETGA 74

                          90       100
                  ....*....|....*....|....
gi 2427571481 238 AVIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:cd10550    75 VVVDEDKCIGCGMCVEACPFGAIR 98
NapH COG0348
Polyferredoxin NapH [Energy production and conversion];
216-261 4.07e-06

Polyferredoxin NapH [Energy production and conversion];


Pssm-ID: 440117 [Multi-domain]  Cd Length: 263  Bit Score: 46.98  E-value: 4.07e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2427571481 216 CIGCTLCVKACPKEAIEMKGslaVIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:COG0348   212 CIDCGLCVKVCPMGIDIRKG---EINQSECINCGRCIDACPKDAIR 254
PRK09898 PRK09898
ferredoxin-like protein;
148-233 4.23e-06

ferredoxin-like protein;


Pssm-ID: 182135 [Multi-domain]  Cd Length: 208  Bit Score: 46.75  E-value: 4.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 148 CEKVCAFGAIKIV--DGLAVVDRERCVGCGACAEECPRGVIALIPRKSKiqvacgnplkgpfvkkvcSVGCIGCTLCVKA 225
Cdd:PRK09898  131 CMNVCPIGAITWQqkEGCITVDHKRCIGCSACTTACPWMMATVNTESKK------------------SSKCVLCGECANA 192


                  ....*...
gi 2427571481 226 CPKEAIEM 233
Cdd:PRK09898  193 CPTGALKI 200
COG2000 COG2000
Uncharacterized Fe-S cluster-containing protein [General function prediction only];
37-75 5.17e-06

Uncharacterized Fe-S cluster-containing protein [General function prediction only];


Pssm-ID: 441603 [Multi-domain]  Cd Length: 212  Bit Score: 46.20  E-value: 5.17e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2427571481  37 QTDIRALLPGANCGGCGFPGCDGYAEACVSGAAKPNKCV 75
Cdd:COG2000     1 MIGKTWLLPGLNCGACGYKTCRDFAAAVYQGKAELEMCP 39
DMSOR_beta_like cd16373
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 174-261 5.31e-06

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319895 [Multi-domain]  Cd Length: 154  Bit Score: 45.32  E-value: 5.31e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 174 CGACAEECPRGVIALIP---RKSKIQVACgnplkgpFVKKVCSV--GCIGCTLCVKACPKEAIEMK----GSLAVIAPAK 244
Cdd:cd16373    59 CDACVEVCPTGALRPLDleeQKVKMGVAV-------IDKDRCLAwqGGTDCGVCVEACPTEAIAIVleddVLRPVVDEDK 131

                          90       100
                  ....*....|....*....|
gi 2427571481 245 CVNCGLCTQKCPV---KAIT 261
Cdd:cd16373   132 CVGCGLCEYVCPVeppKAIV 151
DMSOR_beta_like cd16371
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 148-232 5.99e-06

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319893 [Multi-domain]  Cd Length: 140  Bit Score: 44.86  E-value: 5.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 148 CEKVCAFGAI-KIVDGLAVVDRERCVGCGACAEECPRGVIALIPRKSKiqvacgnplkgpfVKKvcsvgCIGCT------ 220
Cdd:cd16371    62 CVKVCPTGAItKREDGIVVVDQDKCIGCGYCVWACPYGAPQYNPETGK-------------MDK-----CDMCVdrldeg 123

                          90
                  ....*....|....*
gi 2427571481 221 ---LCVKACPKEAIE 232
Cdd:cd16371   124 ekpACVAACPTRALD 138
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 216-259 6.17e-06

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 42.51  E-value: 6.17e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2427571481 216 CIGCTLCVKACPKEAIEMKGSL-------AVIAPAKCVNCGLCTQKCPVKA 259
Cdd:pfam12838   1 CIGCGACVAACPVGAITLDEVGekkgtktVVIDPERCVGCGACVAVCPTGA 51
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 142-186 7.08e-06

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 42.81  E-value: 7.08e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2427571481 142 CMGFGTCEKVCAFGAIKIVDG----LAVVDRERCVGCGACAEECPRGVI 186
Cdd:COG1143     4 CIGCGLCVRVCPVDAITIEDGepgkVYVIDPDKCIGCGLCVEVCPTGAI 52
fdxN_nitrog TIGR02936
ferredoxin III, nif-specific; Members of this family are homodimeric ferredoxins from nitrogen ...
 163-230 8.29e-06

ferredoxin III, nif-specific; Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. [Central intermediary metabolism, Nitrogen fixation]


Pssm-ID: 274356 [Multi-domain]  Cd Length: 91  Bit Score: 43.55  E-value: 8.29e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2427571481 163 LAVVDRERCVGCGACAEECPRGVIALIPRKSKIQVACGNPLKGPFVKKVCSVG----CIGCTLCVKACPKEA 230
Cdd:TIGR02936  15 VTSIDQEKCIGCGRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVAnpgnCIGCGACARVCPKKC 86
oorD PRK09626
2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
 166-231 1.08e-05

2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed


Pssm-ID: 236597 [Multi-domain]  Cd Length: 103  Bit Score: 43.56  E-value: 1.08e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2427571481 166 VDRERCVGCGACAEECPRGVIALIPRKSKIQvacgnplkGPFVKKVCSVGCIGCTLCVKACPKEAI 231
Cdd:PRK09626   13 VDESRCKACDICVSVCPAGVLAMRIDPHAVL--------GKMIKVVHPESCIGCRECELHCPDFAI 70
PRK00783 PRK00783
DNA-directed RNA polymerase subunit D; Provisional
 169-233 1.09e-05

DNA-directed RNA polymerase subunit D; Provisional


Pssm-ID: 234837 [Multi-domain]  Cd Length: 263  Bit Score: 45.65  E-value: 1.09e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2427571481 169 ERCVGCGACAEECPRGVIALipRKSKIQVacGNPLKgpfvkkvcsvgCIGCTLCVKACPKEAIEM 233
Cdd:PRK00783  169 EDCDECEKCVEACPRGVLEL--KEGKLVV--TDLLN-----------CSLCKLCERACPGKAIRV 218
PRK04165 PRK04165
acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
 39-104 1.17e-05

acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional


Pssm-ID: 235235 [Multi-domain]  Cd Length: 450  Bit Score: 46.39  E-value: 1.17e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2427571481  39 DIRALLPGANCGGCGFPGCDGYAEACVSGAAKPNKCvaasPEVSASIAEILgvsAEAAEPMVAFVK 104
Cdd:PRK04165    7 DIYKLLPKTNCGECGEPTCLAFAMKLASGKAELDDC----PYLSEEAKEKL---EEASAPPIREVK 65
RNAP_D cd07030
D subunit of Archaeal RNA polymerase; The D subunit of archaeal RNA polymerase (RNAP) is ...
 169-233 1.58e-05

D subunit of Archaeal RNA polymerase; The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization, and the other is an inserted beta sheet subdomain. The assembly of the two largest archaeal RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of the archaeal D/L heterodimer.


Pssm-ID: 132908 [Multi-domain]  Cd Length: 259  Bit Score: 45.34  E-value: 1.58e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2427571481 169 ERCVGCGACAEECPRGVIALIPRKSKiqvacgnplkgpfVKKVCSvgCIGCTLCVKACPKEAIEM 233
Cdd:cd07030   169 EDCDGCGKCVEECPRGVLELEEGKVV-------------VEDLED--CSLCKLCERACDAGAIRV 218
PRK12387 PRK12387
formate hydrogenlyase complex iron-sulfur subunit; Provisional
 216-260 1.81e-05

formate hydrogenlyase complex iron-sulfur subunit; Provisional


Pssm-ID: 183492 [Multi-domain]  Cd Length: 180  Bit Score: 44.25  E-value: 1.81e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2427571481 216 CIGCTLCVKACPKEAIEMKGSLAV------IAPAKCVNCGLCTQKCPVKAI 260
Cdd:PRK12387   40 CIGCAACVNACPSNALTVETDLATgelaweFNLGRCIFCGRCEEVCPTAAI 90
NapF COG1145
Ferredoxin [Energy production and conversion];
139-194 1.90e-05

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 45.10  E-value: 1.90e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2427571481 139 AYGCMGFGTCEKVCAFGAIKIVDG--LAVVDRERCVGCGACAEECPRGVIALIPRKSK 194
Cdd:COG1145   181 AEKCIGCGLCVKVCPTGAIRLKDGkpQIVVDPDKCIGCGACVKVCPVGAISLEPKEIE 238
Fer4_9 pfam13187
4Fe-4S dicluster domain;
216-260 3.16e-05

4Fe-4S dicluster domain;


Pssm-ID: 463801 [Multi-domain]  Cd Length: 50  Bit Score: 40.61  E-value: 3.16e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2427571481 216 CIGCTLCVKACPKEAIEMK----GSLAVIAPAKCVNCGLCTQKCPVKAI 260
Cdd:pfam13187   2 CTGCGACVAACPAGAIVPDlvgqTIRGDIAGLACIGCGACVDACPRGAI 50
HybA COG0437
Fe-S-cluster-containing dehydrogenase component (DMSO reductase) [Energy production and ...
 165-260 3.89e-05

Fe-S-cluster-containing dehydrogenase component (DMSO reductase) [Energy production and conversion];


Pssm-ID: 440206 [Multi-domain]  Cd Length: 184  Bit Score: 43.40  E-value: 3.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 165 VVDRERCVGCGACAEEC------PRGVialipRKSKIQVACGNPLKGPFVKKVcSVGCIGCT--LCVKACPKEAIE-MKG 235
Cdd:COG0437     9 VIDLTKCIGCRACVVACkeennlPVGV-----TWRRVRRYEEGEFPNVEWLFV-PVLCNHCDdpPCVKVCPTGATYkRED 82

                          90       100
                  ....*....|....*....|....*
gi 2427571481 236 SLAVIAPAKCVNCGLCTQKCPVKAI 260
Cdd:COG0437    83 GIVLVDYDKCIGCRYCVAACPYGAP 107
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
138-243 4.06e-05

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 44.63  E-value: 4.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 138 CAYGCMGFGTCEKVCAFGAIKIVDGLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQvacgnplkgpfvkkvcSVGCI 217
Cdd:COG4624    60 CCCRCCVAISCIQVRGIIIIDKRGPSIIRDKEKCKNCYPCVRACPVKAIKVDDGKAEID----------------EEKCI 123

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2427571481 218 GCTLCVKACPKEAIEMKGSL--------------AVIAPA 243
Cdd:COG4624   124 SCGQCVAVCPFGAITEKSDIekvkkalkdpekvvAQVAPA 163
vorD PRK09623
3-methyl-2-oxobutanoate dehydrogenase subunit delta;
216-264 4.85e-05

3-methyl-2-oxobutanoate dehydrogenase subunit delta;


Pssm-ID: 170016 [Multi-domain]  Cd Length: 105  Bit Score: 41.47  E-value: 4.85e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2427571481 216 CIGCTLCVKACPKEAIEMKGSLAV-IAPAKCVNCGLCTQKCPVKAITDAR 264
Cdd:PRK09623   53 CVKCYICWKFCPEPAIYIKEDGYVaIDYDYCKGCGICANECPTKAITMVK 102
PRK13795 PRK13795
hypothetical protein; Provisional
 170-227 5.54e-05

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 44.21  E-value: 5.54e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2427571481 170 RCVGCGACAEECPRGVIALIPRKSKIQVACGNplkgpfvkkvcsvgCIGCTLCVKACP 227
Cdd:PRK13795  582 ECVGCGVCVGACPTGAIRIEEGKRKISVDEEK--------------CIHCGKCTEVCP 625
NapH COG0348
Polyferredoxin NapH [Energy production and conversion];
142-194 6.24e-05

Polyferredoxin NapH [Energy production and conversion];


Pssm-ID: 440117 [Multi-domain]  Cd Length: 263  Bit Score: 43.51  E-value: 6.24e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2427571481 142 CMGFGTCEKVCAFGaIKIVDGlaVVDRERCVGCGACAEECPRGVIALIPRKSK 194
Cdd:COG0348   212 CIDCGLCVKVCPMG-IDIRKG--EINQSECINCGRCIDACPKDAIRFSSRGEK 261
DMSOR_beta_like cd16370
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 148-234 9.51e-05

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319892 [Multi-domain]  Cd Length: 131  Bit Score: 41.49  E-value: 9.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 148 CEKVCAFGAIKIVDGLAVV-DRERCVGCGACAEECPRGVIALIPRKSKIQVacgnplkgpfvkkvcsvgCIGCTLCVKAC 226
Cdd:cd16370    61 CAEACPTGALEPRKGGGVVlDKEKCIGCGNCVKACIVGAIFWDEETNKPII------------------CIHCGYCARYC 122


                  ....*...
gi 2427571481 227 PKEAIEMK 234
Cdd:cd16370   123 PHDVLAME 130
SIMIBI_bact_arch cd03110
bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily ...
 163-234 1.01e-04

bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily of SIMIBI superfamily. Proteins in this superfamily contain an ATP-binding domain and use energy from hydrolysis of ATP to transfer electron or ion. The specific function of this family is unknown.


Pssm-ID: 349764 [Multi-domain]  Cd Length: 246  Bit Score: 42.76  E-value: 1.01e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2427571481 163 LAVVDRERCVGCGACAEECPRGVIALIPRKSKIqvacgNPLkgpfvkkvcsvGCIGCTLCVKACPKEAIEMK 234
Cdd:cd03110    58 KAFIDQEKCIRCGNCERVCKFGAILEFFQKLIV-----DES-----------LCEGCGACVIICPRGAIYLK 113
PRK14993 PRK14993
tetrathionate reductase subunit TtrB;
165-259 1.45e-04

tetrathionate reductase subunit TtrB;


Pssm-ID: 184955 [Multi-domain]  Cd Length: 244  Bit Score: 42.17  E-value: 1.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 165 VVDRERCVGCGACAEEC------PRGVIALIPRKSKIQVACGNPLKGPFVKKVCSvgciGCT--LCVKACPKEA-IEMKG 235
Cdd:PRK14993   47 LIDLRRCIGCQSCTVSCtienqtPQGAFRTTVNQYQVQREGSQEVTNVLLPRLCN----HCDnpPCVPVCPVQAtFQRED 122

                          90       100
                  ....*....|....*....|....
gi 2427571481 236 SLAVIAPAKCVNCGLCTQKCPVKA 259
Cdd:PRK14993  123 GIVVVDNKRCVGCAYCVQACPYDA 146
DMSOR_beta_like cd16374
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 148-196 1.57e-04

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319896 [Multi-domain]  Cd Length: 139  Bit Score: 40.72  E-value: 1.57e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2427571481 148 CEKVCAFGAIKI-VDGLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQ 196
Cdd:cd16374    51 CMEVCPTGAIYRdEDGAVLVDPDKCIGCGMCAMACPFGVPRFDPSLKVAV 100
PRK08764 PRK08764
Rnf electron transport complex subunit RnfB;
43-188 1.57e-04

Rnf electron transport complex subunit RnfB;


Pssm-ID: 181550 [Multi-domain]  Cd Length: 135  Bit Score: 40.67  E-value: 1.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481  43 LLPGANCGGCGFPGCDGYAEACVSGAAKPNKCVAASPEVSASIAEILGVSAEAaepmvafvkcrgsFDKTvkdcvyQGAH 122
Cdd:PRK08764   14 LLPQTQCGQCGFDGCRPYAQAMARGEATIDRCPPGGDAGARALAQVLGVPARP-------------YDRS------RGTH 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2427571481 123 DCREAAVVpgrgpssCAYGCMGFGTCEKVCAFGAikIVDG---LAVVDRERCVGCGACAEECPRGVIAL 188
Cdd:PRK08764   75 KLPQVAWI-------VEADCIGCTKCIQACPVDA--IVGGakhMHTVIAPLCTGCELCVPACPVDCIEL 134
PRK08764 PRK08764
Rnf electron transport complex subunit RnfB;
204-260 1.75e-04

Rnf electron transport complex subunit RnfB;


Pssm-ID: 181550 [Multi-domain]  Cd Length: 135  Bit Score: 40.67  E-value: 1.75e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2427571481 204 KGPFVKKVCSVGCIGCTLCVKACPKEAI--EMKGSLAVIAPAkCVNCGLCTQKCPVKAI 260
Cdd:PRK08764   75 KLPQVAWIVEADCIGCTKCIQACPVDAIvgGAKHMHTVIAPL-CTGCELCVPACPVDCI 132
PRK14494 PRK14494
putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing ...
 43-85 1.75e-04

putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional


Pssm-ID: 237731 [Multi-domain]  Cd Length: 229  Bit Score: 41.89  E-value: 1.75e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2427571481  43 LLPGANCGGCGFpGCDGYAEACVSGAAKPNKCVAASPEVSASI 85
Cdd:PRK14494  147 LPYNLNCGHCGF-NCKGFAKAIVKGEAKWDDCVSLSGRVKLIV 188
PorD_KorD TIGR02179
2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family; A number ...
 142-190 2.27e-04

2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family; A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.


Pssm-ID: 131234 [Multi-domain]  Cd Length: 78  Bit Score: 38.85  E-value: 2.27e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2427571481 142 CMGFGTCEKVCAFGAIKI-VDGLAVVDRERCVGCGACAEECPRGVIALIP 190
Cdd:TIGR02179  27 CIKCKNCWLYCPEGAIQEdEGGFVGIDYDYCKGCGICANVCPVKAIEMVR 76
DMSOR_beta_like cd16373
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 146-182 3.98e-04

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319895 [Multi-domain]  Cd Length: 154  Bit Score: 39.93  E-value: 3.98e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2427571481 146 GTCEKVCAFGAIKIVD----GLAVVDRERCVGCGACAEECP 182
Cdd:cd16373   103 GVCVEACPTEAIAIVLeddvLRPVVDEDKCVGCGLCEYVCP 143
PRK13984 PRK13984
putative oxidoreductase; Provisional
 162-233 4.10e-04

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 41.68  E-value: 4.10e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2427571481 162 GLAVVDRERCVGCGACAEECPRGVIALIPRKSKIQVACGNPLKGPFVKKVCSVgcigCTLCVKACPKEAIEM 233
Cdd:PRK13984   38 GFHINDWEKCIGCGTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSF----CALCVDICTTGSLKM 105
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 171-230 4.27e-04

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 37.51  E-value: 4.27e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 171 CVGCGACAEECPRGVIALIPRKSKiqvacgnplKGPFVKKVCSVGCIGCTLCVKACPKEA 230
Cdd:pfam12838   1 CIGCGACVAACPVGAITLDEVGEK---------KGTKTVVIDPERCVGCGACVAVCPTGA 51
DMSOR_beta-like cd04410
Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta ...
 142-261 4.34e-04

Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319870 [Multi-domain]  Cd Length: 136  Bit Score: 39.68  E-value: 4.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 142 CMGFGTCEKVCAF----------GAIKIVDGLAVVDRERCVGC-----GACAEECPRGviALIPRKSKIQVAcgNPLKgp 206
Cdd:cd04410     8 CIGCGTCEVACKQehglrpgpdwSRIKVIEGGGLERAFLPVSCmhcedPPCVKACPTG--AIYKDEDGIVLI--DEDK-- 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2427571481 207 fvkkvcsvgCIGCTLCVKACPKEAIEMKGslAVIAPAKCVNCG---------LCTQKCPVKAIT 261
Cdd:cd04410    82 ---------CIGCGSCVEACPYGAIVFDP--EPGKAVKCDLCGdrldeglepACVKACPTGALT 134
porD PRK09624
pyruvate ferredoxin oxidoreductase subunit delta; Reviewed
 178-264 4.70e-04

pyruvate ferredoxin oxidoreductase subunit delta; Reviewed


Pssm-ID: 170017 [Multi-domain]  Cd Length: 105  Bit Score: 38.86  E-value: 4.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 178 AEECPRGVIALIPRKSKIQVACGNPLKGPFVKKVcsvGCIGCTLCVKACPKEAIEM-KGSLAVIAPAKCVNCGLCTQKCP 256
Cdd:PRK09624   18 SEKMTPGAIAYIPGSSVINKTGSWRVFMPEFNRD---KCVRCYLCYIYCPEPAIYLdEEGYPVFDYDYCKGCGICANECP 94


                  ....*...
gi 2427571481 257 VKAITDAR 264
Cdd:PRK09624   95 TKAIEMVR 102
CooF_like cd10563
CooF, iron-sulfur subunit of carbon monoxide dehydrogenase; This family includes CooF, the ...
 148-232 4.86e-04

CooF, iron-sulfur subunit of carbon monoxide dehydrogenase; This family includes CooF, the iron-sulfur subunit of carbon monoxide dehydrogenase (CODH), found in anaerobic bacteria and archaea. Carbon monoxide dehydrogenase is a key enzyme for carbon monoxide (CO) metabolism, where CooF is the proposed mediator of electron transfer between CODH and the CO-induced hydrogenase, catalyzing the reaction that uses CO as a single carbon and energy source, and producing only H2 and CO2. The ion-sulfur subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons in the protein complex during reaction.


Pssm-ID: 319885 [Multi-domain]  Cd Length: 140  Bit Score: 39.55  E-value: 4.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 148 CEKVCAFGAIKI--VDGLAVVDRERCVGCGACAEECPRGVIAliprkskiqvacgnplkgPFVKKVCSVGCIGCT----- 220
Cdd:cd10563    65 CVKACMSGAMHKdpETGIVIHDEEKCVGCWMCVMVCPYGAIR------------------PDKERKVALKCDLCPdretp 126

                          90
                  ....*....|..
gi 2427571481 221 LCVKACPKEAIE 232
Cdd:cd10563   127 ACVEACPTGALV 138
DMSOR_beta_like cd16367
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 148-189 5.06e-04

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319889 [Multi-domain]  Cd Length: 138  Bit Score: 39.60  E-value: 5.06e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2427571481 148 CEKVCAFGAIKIVDGLAVVDRERCVGCGACAEECPRGVIALI 189
Cdd:cd16367    65 CMIGCPTGAIHRDDGGEVVISDACCGCGNCASACPYGAIQMV 106
FDH_beta_like cd16366
beta FeS subunits of formate dehydrogenase N (FDH-N) and similar proteins; This family ...
 140-232 5.15e-04

beta FeS subunits of formate dehydrogenase N (FDH-N) and similar proteins; This family contains beta FeS subunits of several dehydrogenases in the DMSO reductase superfamily, including formate dehydrogenase N (FDH-N), tungsten-containing formate dehydrogenase (W-FDH) and other similar proteins. FDH-N is a major component of nitrate respiration of Escherichia coli; it catalyzes the oxidation of formate to carbon dioxide, donating the electrons to a second substrate to a cytochrome. W-FDH contains a tungsten instead of molybdenum at the catalytic center and seems to be exclusively found in organisms such as hyperthermophilic archaea that live in extreme environments. It catalyzes the oxidation of formate to carbon dioxide, donating the electrons to a second substrate.


Pssm-ID: 319888 [Multi-domain]  Cd Length: 156  Bit Score: 39.69  E-value: 5.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 140 YGCM--GFGTCEKVCAFGAI-KIVDGLAVVDRERCVGCGACAEECPRGVIaliprksKIQVACGNPLKGPFVKKVCSVGC 216
Cdd:cd16366    68 DQCMhcTDAGCLAACPTGAIiRTETGTVVVDPETCIGCGYCVNACPFDIP-------RFDEETGRVAKCTLCYDRISNGL 140

                          90
                  ....*....|....*.
gi 2427571481 217 IgcTLCVKACPKEAIE 232
Cdd:cd16366   141 Q--PACVKTCPTGALT 154
COG4871 COG4871
Metal-binding trascriptional regulator, contains Fe-S cluster and ArsR family DNA binding ...
 38-74 5.70e-04

Metal-binding trascriptional regulator, contains Fe-S cluster and ArsR family DNA binding domain [Transcription];


Pssm-ID: 443899  Cd Length: 177  Bit Score: 39.90  E-value: 5.70e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2427571481  38 TDIRALLPGANCGGCGFPGCDGYAEACVSGAAKPNKC 74
Cdd:COG4871   115 IEIYKLLPKTNCGKCGEPTCMAFAAKLLAGEKGLDDC 151
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 142-192 6.87e-04

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 37.38  E-value: 6.87e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2427571481 142 CMGFGTCEKVCAFGAIKIVDGLA---VVDRERCVGCGACAEECPRGVIALIPRK 192
Cdd:COG1146    10 CIGCGACVEVCPVDVLELDEEGKkalVINPEECIGCGACELVCPVGAITVEDDE 63
PsrB cd10551
polysulfide reductase beta (PsrB) subunit; This family includes the beta subunit of bacterial ...
 165-281 6.93e-04

polysulfide reductase beta (PsrB) subunit; This family includes the beta subunit of bacterial polysulfide reductase (PsrABC), an integral membrane-bound enzyme responsible for quinone-coupled reduction of polysulfides, a process important in extreme environments such as deep-sea vents and hot springs. Polysulfide reductase contains three subunits: a catalytic subunit PsrA, an electron transfer PsrB subunit and the hydrophobic transmembrane PsrC subunit. PsrB belongs to the DMSO reductase superfamily that contains [4Fe-4S] clusters which transfer the electrons from the A subunit to the hydrophobic integral membrane C subunit via the B subunit. In Shewanella oneidensis, which has highly diverse anaerobic respiratory pathways, PsrABC is responsible for H2S generation as well as its regulation via respiration of sulfur species. PsrB transfers electrons from PsrC (serving as quinol oxidase) to the catalytic subunit PsrA for reduction of corresponding electron acceptors. It has been shown that T. thermophilus polysulfide reductase could be a key energy-conserving enzyme of the respiratory chain, using polysulfide as the terminal electron acceptor and pumping protons across the membrane.


Pssm-ID: 319873 [Multi-domain]  Cd Length: 185  Bit Score: 39.82  E-value: 6.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 165 VVDRERCVGCGACAEEC------PRGVialiprkSKIQVACGNPLKGPFVKKVC-SVGCIGCT--LCVKACPKEAI-EMK 234
Cdd:cd10551     2 VIDLRKCIGCGACVVACkaennvPPGV-------FRNRVLEYEVGEYPNVKRTFlPVLCNHCEnpPCVKVCPTGATyKRE 74

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2427571481 235 GSLAVIAPAKCVNCGLCTQKCPVKAIT-DARPPRPAPAQKPAGEATAE 281
Cdd:cd10551    75 DGIVLVDYDKCIGCRYCMAACPYGARYfNPEEPHEFGEVPVRPKGVVE 122
PRK00783 PRK00783
DNA-directed RNA polymerase subunit D; Provisional
 216-261 7.01e-04

DNA-directed RNA polymerase subunit D; Provisional


Pssm-ID: 234837 [Multi-domain]  Cd Length: 263  Bit Score: 40.25  E-value: 7.01e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2427571481 216 CIGCTLCVKACPKEAIEMK-GSLAVIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:PRK00783  171 CDECEKCVEACPRGVLELKeGKLVVTDLLNCSLCKLCERACPGKAIR 217
vorD PRK09623
3-methyl-2-oxobutanoate dehydrogenase subunit delta;
142-189 7.27e-04

3-methyl-2-oxobutanoate dehydrogenase subunit delta;


Pssm-ID: 170016 [Multi-domain]  Cd Length: 105  Bit Score: 38.39  E-value: 7.27e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2427571481 142 CMGFGTCEKVCAFGAIKIV-DGLAVVDRERCVGCGACAEECPRGVIALI 189
Cdd:PRK09623   53 CVKCYICWKFCPEPAIYIKeDGYVAIDYDYCKGCGICANECPTKAITMV 101
PRK08348 PRK08348
NADH-plastoquinone oxidoreductase subunit; Provisional
 216-260 9.98e-04

NADH-plastoquinone oxidoreductase subunit; Provisional


Pssm-ID: 181399 [Multi-domain]  Cd Length: 120  Bit Score: 38.28  E-value: 9.98e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2427571481 216 CIGCTLCVKACPKEAIEMKGSLAVIA--PAKCVNCGLCTQKCPVKAI 260
Cdd:PRK08348   44 CVGCRMCVTVCPAGVFVYLPEIRKVAlwTGRCVFCGQCVDVCPTGAL 90
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
135-189 1.14e-03

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 40.18  E-value: 1.14e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2427571481 135 PSSCAYGCMGFgtCEKVCAFG-AIKI--VDGLAVVDRERCVGCGACAEECPRGVIALI 189
Cdd:PRK13409   14 PKKCNYECIKY--CPVVRTGEeTIEIdeDDGKPVISEELCIGCGICVKKCPFDAISIV 69
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 169-234 1.48e-03

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 39.07  E-value: 1.48e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2427571481 169 ERCVGCGACAEECPRGVIALIPRKSKIQvacGNplkgpfvkkvcsvgCIGCTLCVKACPKEAIEMK 234
Cdd:NF038196  185 DKCIGCGICAKVCPVNNIEMEDGKPVWG---HN--------------CTHCLACIHRCPKEAIEYG 233
psaC CHL00065
photosystem I subunit VII
 216-256 1.69e-03

photosystem I subunit VII


Pssm-ID: 177005 [Multi-domain]  Cd Length: 81  Bit Score: 36.66  E-value: 1.69e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2427571481 216 CIGCTLCVKACPKEAIEM------KGSLAVIAP--AKCVNCGLCTQKCP 256
Cdd:CHL00065   11 CIGCTQCVRACPTDVLEMipwdgcKAKQIASAPrtEDCVGCKRCESACP 59
PhsB_like cd10553
uncharacterized beta subfamily of DMSO Reductase similar to Desulfonauticus sp PhsB; This ...
 148-195 1.90e-03

uncharacterized beta subfamily of DMSO Reductase similar to Desulfonauticus sp PhsB; This family includes beta FeS subunits of anaerobic DMSO reductase (DMSOR) superfamily that have yet to be characterized. DMSOR consists of a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and the tungsten-containing formate dehydrogenase (FDH-T). Examples of heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319875 [Multi-domain]  Cd Length: 146  Bit Score: 37.73  E-value: 1.90e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2427571481 148 CEKVCAFGAI--KIVDGLAVVDRERCVGCGACAEECPRGVIALIPRKSKI 195
Cdd:cd10553    66 CVKACPTGAMqkREKDGIVYVDQELCIGCKACIEACPWGIPQWNPATGKV 115
DMSOR_beta_like cd16371
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 165-256 2.22e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319893 [Multi-domain]  Cd Length: 140  Bit Score: 37.54  E-value: 2.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 165 VVDRERCVGCGACAEECPR--GVIALIPRKSKIQVACGNPLKGPFVKKvcSVGCIGCT--LCVKACPKEAIE-MKGSLAV 239
Cdd:cd16371     3 YFDQERCIGCKACEIACKDknDLPPGVNWRRVYEYEGGEFPEVFAYFL--SMSCNHCEnpACVKVCPTGAITkREDGIVV 80

                          90
                  ....*....|....*..
gi 2427571481 240 IAPAKCVNCGLCTQKCP 256
Cdd:cd16371    81 VDQDKCIGCGYCVWACP 97
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 142-185 2.35e-03

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 35.58  E-value: 2.35e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2427571481 142 CMGFGTCEKVCAFGAIKIVDGL-------AVVDRERCVGCGACAEECPRGV 185
Cdd:pfam12838   1 CIGCGACVAACPVGAITLDEVGekkgtktVVIDPERCVGCGACVAVCPTGA 51
FDH_b_like cd10562
uncharacterized subfamily of beta subunit of formate dehydrogenase; This subfamily includes ...
 215-256 2.51e-03

uncharacterized subfamily of beta subunit of formate dehydrogenase; This subfamily includes the beta-subunit of formate dehydrogenases that are as yet uncharacterized. Members of the DMSO reductase family include formate dehydrogenase N and O (FDH-N, FDH-O) and tungsten-containing formate dehydrogenase (W-FDH) and other similar proteins. FDH-N, a major component of nitrate respiration of Escherichia coli, is involved in the major anaerobic respiratory pathway in the presence of nitrate, catalyzing the oxidation of formate to carbon dioxide at the expense of nitrate reduction to nitrite. It forms a heterotrimer; the alpha-subunit (FDH-G) is the catalytic site of formate oxidation and membrane-associated, incorporating a selenocysteine (SeCys) residue and a [4Fe/4S] cluster in addition to two bis-MGD cofactors, the beta subunit (FDH-H) contains four [4Fe/4S] clusters which transfer the electrons from the alpha subunit to the gamma-subunit (FDH-I), a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. W-FDH contains a tungsten instead of molybdenum at the catalytic center. This enzyme seems to be exclusively found in organisms such as hyperthermophilic archaea that live in extreme environments. It is a heterodimer of a large and a small subunit; the large subunit harbors the W site and one [4Fe-4S] center and the small subunit, containing three [4Fe-4S] clusters, functions to transfer electrons.


Pssm-ID: 319884 [Multi-domain]  Cd Length: 161  Bit Score: 37.67  E-value: 2.51e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2427571481 215 GCIGCT--LCVKACPKEAIEMKGSLAV-IAPAKCVNCGLCTQKCP 256
Cdd:cd10562    69 QCMHCTdaACVKVCPTGALYKTENGAVvVDEDKCIGCGYCVAACP 113
Fer4_21 pfam14697
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 216-257 2.62e-03

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 434137 [Multi-domain]  Cd Length: 59  Bit Score: 35.33  E-value: 2.62e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2427571481 216 CIGCTLCVKACPK---EAIEMKG-SLAVIAPAKCVNCGLCTQKCPV 257
Cdd:pfam14697   8 CIGCGKCYIACPDtshQAIVGDGkRHHTVIEDECTGCNLCVSVCPV 53
PRK13984 PRK13984
putative oxidoreductase; Provisional
 142-256 2.76e-03

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 38.98  E-value: 2.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 142 CMGFGTCEKVCAFGAIKIVD--GLA----------VVDRERCVGCGACAEECPRGVIAL----------------IPRKS 193
Cdd:PRK13984   47 CIGCGTCSKICPTDAITMVEvpDLPqeygkkpqrpVIDYGRCSFCALCVDICTTGSLKMtreyihispdpedfifMPTEK 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 194 KIQVACGNPLKGPFVKKVCSvgcigctlcvKACPKEAIEM----------------KG---SLAVIAPAKCVNCGLCTQK 254
Cdd:PRK13984  127 GINAKEPDNAPLGWVRDENS----------ELLDLERVEMeeippeervksfieivKGyskEQAMQEAARCVECGICTDT 196


                  ..
gi 2427571481 255 CP 256
Cdd:PRK13984  197 CP 198
PRK10330 PRK10330
electron transport protein HydN;
148-191 2.89e-03

electron transport protein HydN;


Pssm-ID: 182382 [Multi-domain]  Cd Length: 181  Bit Score: 37.95  E-value: 2.89e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2427571481 148 CEKVCAFGAIKIVDGLAVVDRERCVGCGACAEECPRGVIALIPR 191
Cdd:PRK10330   66 CANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVR 109
Fer4 pfam00037
4Fe-4S binding domain; Superfamily includes proteins containing domains which bind to ...
 164-186 2.91e-03

4Fe-4S binding domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 459642 [Multi-domain]  Cd Length: 24  Bit Score: 34.53  E-value: 2.91e-03
                          10        20
                  ....*....|....*....|...
gi 2427571481 164 AVVDRERCVGCGACAEECPRGVI 186
Cdd:pfam00037   1 VVIDEEKCIGCGACVEVCPVGAI 23
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 216-260 4.10e-03

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 38.32  E-value: 4.10e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2427571481 216 CIGCTLCVKACPKEAIEM--KGSLAVIAPAKCVNCGLCTQKCPVKAI 260
Cdd:PRK12771  512 CFECDNCYGACPQDAIIKlgPGRRYHFDYDKCTGCHICADVCPCGAI 558
HycB_like cd10554
HycB, HydN and similar proteins; This family includes HycB, the FeS subunit of a ...
 222-280 4.17e-03

HycB, HydN and similar proteins; This family includes HycB, the FeS subunit of a membrane-associated formate hydrogenlyase system (FHL-1) in Escherichia coli that breaks down formate, produced during anaerobic fermentation, to H2 and CO2. FHL-1 consists of formate dehydrogenase H (FDH-H) and the hydrogenase 3 complex (Hyd-3). HycB is thought to code for the [4Fe-4S] ferredoxin subunit of hydrogenase 3, which functions as an intermediate electron carrier protein between hydrogenase 3 and formate dehydrogenase. HydN codes for the [4Fe-4S] ferredoxin subunit of FDH-H; a hydN in-frame deletion mutation causes only weak reduction in hydrogenase activity, but loss of more than 60% of FDH-H activity. This pathway is only active at low pH and high formate concentrations, and is thought to provide a detoxification/de-acidification system countering the buildup of formate during fermentation.


Pssm-ID: 319876 [Multi-domain]  Cd Length: 149  Bit Score: 36.85  E-value: 4.17e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2427571481 222 CVKACPKEAIEMKGSLAVIAPAKCVNCGLCTQKCPVKAITDARPPRPAPAQKPAGEATA 280
Cdd:cd10554    64 CANVCPVGAISQEDGVVQVDEERCIGCKLCVLACPFGAIEMAPTTVPGVDWERGPRAVA 122
Fer4_10 pfam13237
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ...
 216-256 5.65e-03

4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 404174 [Multi-domain]  Cd Length: 56  Bit Score: 34.53  E-value: 5.65e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2427571481 216 CIGCTLCVKACP-------KEAIEMKGSLAVIAPAKCVNCGLCTQKCP 256
Cdd:pfam13237   9 CIGCGRCTAACPagltrvgAIVERLEGEAVRIGVWKCIGCGACVEACP 56
PRK12769 PRK12769
putative oxidoreductase Fe-S binding subunit; Reviewed
 165-286 5.95e-03

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183733 [Multi-domain]  Cd Length: 654  Bit Score: 38.19  E-value: 5.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 165 VVDRERCVGCGACAEECprgVIA-------LIPR--KSKIQVacgnpLKGPfvKKVCSVGCIGC--TLCVKACPKEAIEM 233
Cdd:PRK12769    6 MANSQQCLGCHACEIAC---VMAhndeqhvLSQHhfHPRITV-----IKHQ--QQRSAVTCHHCedAPCARSCPNGAISH 75

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2427571481 234 KGSLAVIAPAKCVNCGLCTQKCPVKAIT-----DARPPRPAPAQK-------PAGEATAEAAPVQ 286
Cdd:PRK12769   76 VDDSIQVNQQKCIGCKSCVVACPFGTMQivltpVAAGKVKATAHKcdlcagrENGPACVENCPAD 140
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 141-190 6.49e-03

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 37.93  E-value: 6.49e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2427571481 141 GCMGFGTCEKVCAFGAIKIVDglavVDRERCVGCGACAEECPRGVIALIP 190
Cdd:PRK12771  517 NCYGACPQDAIIKLGPGRRYH----FDYDKCTGCHICADVCPCGAIEMGP 562
PRK14993 PRK14993
tetrathionate reductase subunit TtrB;
148-182 7.89e-03

tetrathionate reductase subunit TtrB;


Pssm-ID: 184955 [Multi-domain]  Cd Length: 244  Bit Score: 37.16  E-value: 7.89e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2427571481 148 CEKVCAFGA-IKIVDGLAVVDRERCVGCGACAEECP 182
Cdd:PRK14993  108 CVPVCPVQAtFQREDGIVVVDNKRCVGCAYCVQACP 143
SIMIBI_bact_arch cd03110
bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily ...
 216-261 8.01e-03

bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily of SIMIBI superfamily. Proteins in this superfamily contain an ATP-binding domain and use energy from hydrolysis of ATP to transfer electron or ion. The specific function of this family is unknown.


Pssm-ID: 349764 [Multi-domain]  Cd Length: 246  Bit Score: 36.98  E-value: 8.01e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2427571481 216 CIGCTLCVKACPKEAIEMKGSLAVIAPAKCVNCGLCTQKCPVKAIT 261
Cdd:cd03110    66 CIRCGNCERVCKFGAILEFFQKLIVDESLCEGCGACVIICPRGAIY 111
DMSOR_beta_like cd16374
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 166-261 8.32e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319896 [Multi-domain]  Cd Length: 139  Bit Score: 35.71  E-value: 8.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 166 VDRERCVGCGACAEEC-------PRGVIALIPRKSKIQVACGNPLKGPFVKkVCSVG----------------CIGCTLC 222
Cdd:cd16374     3 VDPERCIGCRACEIACarehsgkPRISVEVVEDLASVPVRCRHCEDAPCME-VCPTGaiyrdedgavlvdpdkCIGCGMC 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2427571481 223 VKACPKEAIEMKGSLAVIapAKCVNCG---------LCTQKCPVKAIT 261
Cdd:cd16374    82 AMACPFGVPRFDPSLKVA--VKCDLCIdrrregklpACVEACPTGALK 127
EBDH_beta cd10555
beta subunit of ethylbenzene-dehydrogenase (EBDH); This subfamily includes ethylbenzene ...
 148-227 8.39e-03

beta subunit of ethylbenzene-dehydrogenase (EBDH); This subfamily includes ethylbenzene dehydrogenase (EBDH, EC 1.17.99.2), a member of the DMSO reductase family. EBDH oxidizes the hydrocarbon ethylbenzene to (S)-1-phenylethanol. It is a heterotrimer, with the alpha subunit containing the catalytic center with a molybdenum held by two molybdopterin-guanine dinucleotides, the beta subunit containing four iron-sulfur clusters (the electron transfer subunit) and the gamma subunit containing a methionine and a lysine as axial heme ligands. During catalysis, electrons produced by substrate oxidation are transferred to a heme in the gamma subunit and then presumably to a separate cytochrome involved in nitrate respiration.


Pssm-ID: 319877 [Multi-domain]  Cd Length: 316  Bit Score: 37.28  E-value: 8.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 148 CEKVCAFGAI--KIVDGLAVVDRERCVGCGACAEECPRGVIALIPRKSKiqvacgnplkgpfvkkvcSVGCIGC------ 219
Cdd:cd10555   141 CLAACPRKAIykREEDGIVLVDQDRCRGYRYCVEACPYKKIYFNPVEQK------------------SEKCIFCypriek 202

                          90
                  ....*....|.
gi 2427571481 220 ---TLCVKACP 227
Cdd:cd10555   203 gvaPACARQCV 213
Fer4_9 pfam13187
4Fe-4S dicluster domain;
170-231 8.61e-03

4Fe-4S dicluster domain;


Pssm-ID: 463801 [Multi-domain]  Cd Length: 50  Bit Score: 33.68  E-value: 8.61e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2427571481 170 RCVGCGACAEECPRGVIALIPRKSKIQVACGNPLkgpfvkkvcsvgCIGCTLCVKACPKEAI 231
Cdd:pfam13187   1 KCTGCGACVAACPAGAIVPDLVGQTIRGDIAGLA------------CIGCGACVDACPRGAI 50
Fer4_9 pfam13187
4Fe-4S dicluster domain;
142-186 9.05e-03

4Fe-4S dicluster domain;


Pssm-ID: 463801 [Multi-domain]  Cd Length: 50  Bit Score: 33.68  E-value: 9.05e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2427571481 142 CMGFGTCEKVCAFGAIKIVDG----LAVVDRERCVGCGACAEECPRGVI 186
Cdd:pfam13187   2 CTGCGACVAACPAGAIVPDLVgqtiRGDIAGLACIGCGACVDACPRGAI 50
PRK09898 PRK09898
ferredoxin-like protein;
155-256 9.17e-03

ferredoxin-like protein;


Pssm-ID: 182135 [Multi-domain]  Cd Length: 208  Bit Score: 36.74  E-value: 9.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2427571481 155 GAIKIVDGLAVVDRERCVGCGACAEECP----RGVIALIPRkSKIQ---------VACGNPLKGPFVkkVCSVGCIGCT- 220
Cdd:PRK09898   52 GLINTPKGVLVTQRARCTGCHRCEISCTnfndGSVGTFFSR-IKIHrnyffgdngVGSGGGLYGDLN--YTADTCRQCKe 128

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2427571481 221 -LCVKACPKEAIEMKGSLAVIA--PAKCVNCGLCTQKCP 256
Cdd:PRK09898  129 pQCMNVCPIGAITWQQKEGCITvdHKRCIGCSACTTACP 167
PLN00071 PLN00071
photosystem I subunit VII; Provisional
 215-257 9.29e-03

photosystem I subunit VII; Provisional


Pssm-ID: 177700 [Multi-domain]  Cd Length: 81  Bit Score: 34.54  E-value: 9.29e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2427571481 215 GCIGCTLCVKACPKEAIEM------KGSLAVIAP--AKCVNCGLCTQKCPV 257
Cdd:PLN00071   10 TCIGCTQCVRACPTDVLEMipwdgcKAKQIASAPrtEDCVGCKRCESACPT 60
Fer COG1141
Ferredoxin [Energy production and conversion];
165-182 9.32e-03

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 34.09  E-value: 9.32e-03
                          10
                  ....*....|....*...
gi 2427571481 165 VVDRERCVGCGACAEECP 182
Cdd:COG1141     4 TVDRDTCIGCGLCVALAP 21
PRK08222 PRK08222
hydrogenase 4 subunit H; Validated
 216-261 9.83e-03

hydrogenase 4 subunit H; Validated


Pssm-ID: 181301 [Multi-domain]  Cd Length: 181  Bit Score: 36.27  E-value: 9.83e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2427571481 216 CIGCTLCVKACPKEAIEMKGSLAV------IAPAKCVNCGLCTQKCPVKAIT 261
Cdd:PRK08222   40 CIACGACTCACPANALTIQTDDQQnsrtwqLYLGRCIYCGRCEEVCPTRAIQ 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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