|
Name |
Accession |
Description |
Interval |
E-value |
| GatE |
COG2511 |
Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain [Translation, ribosomal ... |
7-405 |
0e+00 |
|
Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain [Translation, ribosomal structure and biogenesis];
Pssm-ID: 442001 [Multi-domain] Cd Length: 630 Bit Score: 547.09 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 7 EGGIVIEVKGVQQLDQLEKVVEYEAKRQHGLLVISKKIQEKDWKFTNEDKKDITELFSKCKSKIIQNAIKKNQKILAVSF 86
Cdd:COG2511 233 AGGARVEIKGVQDLDLIPKIVEYEVKRQVNLLEIRDELRERGASVEDIEIVDVTDVFKDTKSKVIKKALKKGGKVLAVKL 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 87 KNMAGMFGFSPYEGIRLGKEVAELVRFFGIGGVFHSDELPNYGIEESDLEKLKKFAEIKENDAFLILASPQEKMHTIVEQ 166
Cdd:COG2511 313 PGFAGLLGREIQPGRRLGTELADYAKFWGVGGIFHTDELPNYGITEEEVEALREALGAGEEDAFVIVADEEEKAKKALEA 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 167 IILRIEHIRDkGIPIDTRLATQSGETKFLRPRPGAARMYPETDIPPIIITKEELSEAENKIPKSWDDSIKELETKYKINP 246
Cdd:COG2511 393 VIERAKEALE-GVPEETRAALPDGTTRYLRPLPGAARMYPETDIPPVEIDEEELEEAKKNLPELPEEKVERLVKEYGLNE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 247 QLAEQIFDSRYIELFEKIIEDININPTFVASILCSSITNLERSGLDPNLLKNQEIFKLFQLLEEGKIAKESIEIIFENIM 326
Cdd:COG2511 472 ELAEQIVDSERLDLFEELVEKKGVDPTLIASTLTSTLTELRREGVDVENLTDEHIEEVFDLVAEGKIAKEAIEEILEALA 551
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2442656250 327 AGKSKTVEQAIKNTSIQSVNEDDLEKIIGDIVENNNEIIKNQKERAIGPLMGIVMKELRGKASGETINNILLKNIKKKI 405
Cdd:COG2511 552 ENPDLSAEEAVEELGLGGLSEEEVEEIIDEVVEENADQVKEKGMGAFGPLMGEVMKELRGKADGKLVSEILREKIQKRL 630
|
|
| PRK04028 |
PRK04028 |
Glu-tRNA(Gln) amidotransferase subunit GatE; |
6-407 |
9.89e-162 |
|
Glu-tRNA(Gln) amidotransferase subunit GatE;
Pssm-ID: 235205 [Multi-domain] Cd Length: 630 Bit Score: 468.91 E-value: 9.89e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 6 MEGGIVIEVKGVQQLDQLEKVVEYEAKRQHGLLVISKKIQEKDWkFTNEDKKDITELFSKCKSKIIQNAIKKNQKILAVS 85
Cdd:PRK04028 232 IAGGARVEIKGVQKLDLIPKVVEYEVQRQLNLLKIRDELKERGA-SVEDEIVDVTELFKDTKSKIIKKALKKGGKVLAIK 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 86 FKNMAGMFGFSPYEGIRLGKEVAELVRFFGIGGVFHSDELPNYGIEESDLEKLKKFAEIKENDAFLILASPQEKMHTIVE 165
Cdd:PRK04028 311 LPGFKGLLGREIQPGRRLGTELADYAKAWGVGGIFHTDELPAYGITEEEVEALREALGAGENDAFILVADEEEKAEKALE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 166 QIILRIEHIRDkGIPIDTRLATQSGETKFLRPRPGAARMYPETDIPPIIITKEELSEAENKIPKSWDDSIKELETKYKIN 245
Cdd:PRK04028 391 AVIERAKEALE-GVPEETRGALPDGTTRYLRPLPGAARMYPETDIPPIRITEELLEKIKKNLPELPEEKVERLIKEYGLS 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 246 PQLAEQIFDSRYIELFEKIIEDiNINPTFVASILCSSITNLERSGLDPNLLKNQEIFKLFQLLEEGKIAKESIEIIFENI 325
Cdd:PRK04028 470 EELAEQLAYSERLDLFEELVKK-GVDPTLIASTLENTLKELRREGVDVENITDEHIEEVFKLVSEGKIAKEAIEEILKEL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 326 MAGKSKTVEQAIKNTSIQSVNEDDLEKIIGDIVENNNEIIKNQKERAIGPLMGIVMKELRGKASGETINNILLKNIKKKI 405
Cdd:PRK04028 549 AENPGKSAEEAAEELGLKGLSEEEVEKIIDEIVEENIDFVKEKGMGAFGPLMGEVMAELRGKADGKLVSEILREKLKEIL 628
|
..
gi 2442656250 406 EN 407
Cdd:PRK04028 629 NK 630
|
|
| gatE_arch |
TIGR00134 |
glutamyl-tRNA(Gln) amidotransferase, subunit E; This peptide is found only in the Archaea. It ... |
9-403 |
2.70e-93 |
|
glutamyl-tRNA(Gln) amidotransferase, subunit E; This peptide is found only in the Archaea. It is paralogous to the gatB-encoded subunit of Glu-tRNA(Gln) amidotransferase. The GatABC system operates in many bacteria to convert Glu-tRNA(Gln) into Gln-tRNA(Gln). However, the homologous system in archaea instead converts Asp-tRNA(Asn) to Asn-tRNA(Asn). Glu-tRNA(Gln) is converted to Gln-tRNA(Gln) by a heterodimeric amidotransferase of GatE (this protein) and GatD. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 213509 [Multi-domain] Cd Length: 620 Bit Score: 292.94 E-value: 2.70e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 9 GIVIEVKGVQQLDQLEKVVEYEAKRQHGLLVISKKIQEKDWKFtnEDKK-DITELFSKCKSKIIQNAikknQKILAVSFK 87
Cdd:TIGR00134 232 GARVEVKGVQDLDLIPKIVEREVKRQLNLLKIRDELQERGAVV--EEKIfDVTEVFADTKSKIISNA----ESVKAVLLR 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 88 NMAGMFGFSPYEGIRLGKEVAELVRFFGIGGVFHSDELPNYGIEESDLEKLKKFAEIKENDAFLILASPQEKMHTIVEQI 167
Cdd:TIGR00134 306 GFDGLVGVEIQPGRRLGTEFADYAKKRGVGGIFHTDELPAYGITEEEVRGLRDAVGAEQGDAVVMVAHERVTVERALREV 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 168 ILRIEHIRdKGIPIDTRLATQSGETKFLRPRPGAARMYPETDIPPIIITKEELSEAENKIPKSWDDSIKELETKYKINPQ 247
Cdd:TIGR00134 386 IERAKMAL-QGVPEETRKALEDGNTQYLRPLPGAARMYPETDIPPFRIEDELLEGIRRNLPELPEEKKERIMREYGLSED 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 248 LAEQIFDSRYIELFEKIIEDININPTFVASILCSSITNLERSGLDPNLLKNQEIFKLFQLLEEGKIAKESIEIIFEnIMA 327
Cdd:TIGR00134 465 LASQLVKSNYVDEFEALTEKFRVDPTVIASLLAYTLRELRREGHDIDGLELRHLRDAIKLLEVGKIAKEGLREILK-CMC 543
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2442656250 328 GKSKTVEQAIKNTSIQSVNEDDLEKIIGDIVENNNEIIKNQKERAIGPLMGIVMKELRGKASGETINNILLKNIKK 403
Cdd:TIGR00134 544 DEPLAAEDAARKLKLKLLAEEEIESIIQEIIEENLDMISERGEGAMGPLMGQAMGRLRGKADGKVVNRILRKKLKE 619
|
|
| GatB_Yqey |
smart00845 |
GatB domain; This domain is found in GatB and proteins related to bacterial Yqey. It is about ... |
260-399 |
4.53e-18 |
|
GatB domain; This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Pssm-ID: 197913 [Multi-domain] Cd Length: 147 Bit Score: 80.24 E-value: 4.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 260 LFEKIIEDINiNPTFVASILCSSI-TNLERSGLDPNL--LKNQEIFKLFQLLEEGKIAKESIEIIFENIMAGkSKTVEQA 336
Cdd:smart00845 1 YFEEVVKAGA-DPKLAANWLLGELlGELNKEGLEIEEspITPEHLAELLKLIDDGTISGKIAKEVLEELLEG-GKSPEEI 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2442656250 337 IKNTSIQSVN-EDDLEKIIGDIVENNNEII---KNQKERAIGPLMGIVMKELRGKASGETINNILLK 399
Cdd:smart00845 79 VEEKGLKQISdEGELEAIVDEVIAENPDAVedyRAGKKKALGFLVGQVMKATRGKADPKLVNELLKE 145
|
|
| GatB_Yqey |
pfam02637 |
GatB domain; This domain is found in GatB. It is about 140 amino acid residues long. This ... |
259-399 |
1.54e-16 |
|
GatB domain; This domain is found in GatB. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB, which transamidates Glu-tRNA to Gln-tRNA.
Pssm-ID: 396969 [Multi-domain] Cd Length: 148 Bit Score: 76.06 E-value: 1.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 259 ELFEKIIEDININPTFVASILCSSITNLERSGLDP--NLLKNQEIFKLFQLLEEGKIAKESIEIIFEnIMAGKSKTVEQA 336
Cdd:pfam02637 1 DFFEEAVKAGADPKLAANWLLGELLGYLNKEGLDIdeSPLTPEHLAELIKLIDEGTISGKIAKEVLE-ELLENGKSPEEI 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2442656250 337 IKNTSIQSVN-EDDLEKIIGDIVENNN---EIIKNQKERAIGPLMGIVMKELRGKASGETINNILLK 399
Cdd:pfam02637 80 VEEKGLKQISdEEELEKIVDEVIAENPkavEDYKSGKEKALGFLVGQVMKKTRGKADPKLVNELLKE 146
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| GatE |
COG2511 |
Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain [Translation, ribosomal ... |
7-405 |
0e+00 |
|
Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain [Translation, ribosomal structure and biogenesis];
Pssm-ID: 442001 [Multi-domain] Cd Length: 630 Bit Score: 547.09 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 7 EGGIVIEVKGVQQLDQLEKVVEYEAKRQHGLLVISKKIQEKDWKFTNEDKKDITELFSKCKSKIIQNAIKKNQKILAVSF 86
Cdd:COG2511 233 AGGARVEIKGVQDLDLIPKIVEYEVKRQVNLLEIRDELRERGASVEDIEIVDVTDVFKDTKSKVIKKALKKGGKVLAVKL 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 87 KNMAGMFGFSPYEGIRLGKEVAELVRFFGIGGVFHSDELPNYGIEESDLEKLKKFAEIKENDAFLILASPQEKMHTIVEQ 166
Cdd:COG2511 313 PGFAGLLGREIQPGRRLGTELADYAKFWGVGGIFHTDELPNYGITEEEVEALREALGAGEEDAFVIVADEEEKAKKALEA 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 167 IILRIEHIRDkGIPIDTRLATQSGETKFLRPRPGAARMYPETDIPPIIITKEELSEAENKIPKSWDDSIKELETKYKINP 246
Cdd:COG2511 393 VIERAKEALE-GVPEETRAALPDGTTRYLRPLPGAARMYPETDIPPVEIDEEELEEAKKNLPELPEEKVERLVKEYGLNE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 247 QLAEQIFDSRYIELFEKIIEDININPTFVASILCSSITNLERSGLDPNLLKNQEIFKLFQLLEEGKIAKESIEIIFENIM 326
Cdd:COG2511 472 ELAEQIVDSERLDLFEELVEKKGVDPTLIASTLTSTLTELRREGVDVENLTDEHIEEVFDLVAEGKIAKEAIEEILEALA 551
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2442656250 327 AGKSKTVEQAIKNTSIQSVNEDDLEKIIGDIVENNNEIIKNQKERAIGPLMGIVMKELRGKASGETINNILLKNIKKKI 405
Cdd:COG2511 552 ENPDLSAEEAVEELGLGGLSEEEVEEIIDEVVEENADQVKEKGMGAFGPLMGEVMKELRGKADGKLVSEILREKIQKRL 630
|
|
| PRK04028 |
PRK04028 |
Glu-tRNA(Gln) amidotransferase subunit GatE; |
6-407 |
9.89e-162 |
|
Glu-tRNA(Gln) amidotransferase subunit GatE;
Pssm-ID: 235205 [Multi-domain] Cd Length: 630 Bit Score: 468.91 E-value: 9.89e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 6 MEGGIVIEVKGVQQLDQLEKVVEYEAKRQHGLLVISKKIQEKDWkFTNEDKKDITELFSKCKSKIIQNAIKKNQKILAVS 85
Cdd:PRK04028 232 IAGGARVEIKGVQKLDLIPKVVEYEVQRQLNLLKIRDELKERGA-SVEDEIVDVTELFKDTKSKIIKKALKKGGKVLAIK 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 86 FKNMAGMFGFSPYEGIRLGKEVAELVRFFGIGGVFHSDELPNYGIEESDLEKLKKFAEIKENDAFLILASPQEKMHTIVE 165
Cdd:PRK04028 311 LPGFKGLLGREIQPGRRLGTELADYAKAWGVGGIFHTDELPAYGITEEEVEALREALGAGENDAFILVADEEEKAEKALE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 166 QIILRIEHIRDkGIPIDTRLATQSGETKFLRPRPGAARMYPETDIPPIIITKEELSEAENKIPKSWDDSIKELETKYKIN 245
Cdd:PRK04028 391 AVIERAKEALE-GVPEETRGALPDGTTRYLRPLPGAARMYPETDIPPIRITEELLEKIKKNLPELPEEKVERLIKEYGLS 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 246 PQLAEQIFDSRYIELFEKIIEDiNINPTFVASILCSSITNLERSGLDPNLLKNQEIFKLFQLLEEGKIAKESIEIIFENI 325
Cdd:PRK04028 470 EELAEQLAYSERLDLFEELVKK-GVDPTLIASTLENTLKELRREGVDVENITDEHIEEVFKLVSEGKIAKEAIEEILKEL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 326 MAGKSKTVEQAIKNTSIQSVNEDDLEKIIGDIVENNNEIIKNQKERAIGPLMGIVMKELRGKASGETINNILLKNIKKKI 405
Cdd:PRK04028 549 AENPGKSAEEAAEELGLKGLSEEEVEKIIDEIVEENIDFVKEKGMGAFGPLMGEVMAELRGKADGKLVSEILREKLKEIL 628
|
..
gi 2442656250 406 EN 407
Cdd:PRK04028 629 NK 630
|
|
| gatE_arch |
TIGR00134 |
glutamyl-tRNA(Gln) amidotransferase, subunit E; This peptide is found only in the Archaea. It ... |
9-403 |
2.70e-93 |
|
glutamyl-tRNA(Gln) amidotransferase, subunit E; This peptide is found only in the Archaea. It is paralogous to the gatB-encoded subunit of Glu-tRNA(Gln) amidotransferase. The GatABC system operates in many bacteria to convert Glu-tRNA(Gln) into Gln-tRNA(Gln). However, the homologous system in archaea instead converts Asp-tRNA(Asn) to Asn-tRNA(Asn). Glu-tRNA(Gln) is converted to Gln-tRNA(Gln) by a heterodimeric amidotransferase of GatE (this protein) and GatD. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 213509 [Multi-domain] Cd Length: 620 Bit Score: 292.94 E-value: 2.70e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 9 GIVIEVKGVQQLDQLEKVVEYEAKRQHGLLVISKKIQEKDWKFtnEDKK-DITELFSKCKSKIIQNAikknQKILAVSFK 87
Cdd:TIGR00134 232 GARVEVKGVQDLDLIPKIVEREVKRQLNLLKIRDELQERGAVV--EEKIfDVTEVFADTKSKIISNA----ESVKAVLLR 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 88 NMAGMFGFSPYEGIRLGKEVAELVRFFGIGGVFHSDELPNYGIEESDLEKLKKFAEIKENDAFLILASPQEKMHTIVEQI 167
Cdd:TIGR00134 306 GFDGLVGVEIQPGRRLGTEFADYAKKRGVGGIFHTDELPAYGITEEEVRGLRDAVGAEQGDAVVMVAHERVTVERALREV 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 168 ILRIEHIRdKGIPIDTRLATQSGETKFLRPRPGAARMYPETDIPPIIITKEELSEAENKIPKSWDDSIKELETKYKINPQ 247
Cdd:TIGR00134 386 IERAKMAL-QGVPEETRKALEDGNTQYLRPLPGAARMYPETDIPPFRIEDELLEGIRRNLPELPEEKKERIMREYGLSED 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 248 LAEQIFDSRYIELFEKIIEDININPTFVASILCSSITNLERSGLDPNLLKNQEIFKLFQLLEEGKIAKESIEIIFEnIMA 327
Cdd:TIGR00134 465 LASQLVKSNYVDEFEALTEKFRVDPTVIASLLAYTLRELRREGHDIDGLELRHLRDAIKLLEVGKIAKEGLREILK-CMC 543
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2442656250 328 GKSKTVEQAIKNTSIQSVNEDDLEKIIGDIVENNNEIIKNQKERAIGPLMGIVMKELRGKASGETINNILLKNIKK 403
Cdd:TIGR00134 544 DEPLAAEDAARKLKLKLLAEEEIESIIQEIIEENLDMISERGEGAMGPLMGQAMGRLRGKADGKVVNRILRKKLKE 619
|
|
| gatB |
PRK05477 |
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB; |
189-399 |
1.85e-23 |
|
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB;
Pssm-ID: 235489 [Multi-domain] Cd Length: 474 Bit Score: 101.68 E-value: 1.85e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 189 SGETKFLRPRPGAA--RMYPETDIPPIIITKEELSEAENKIPKSWDDSIKELETKYKINPQLAEQIFDSRYI-ELFEKII 265
Cdd:PRK05477 254 KGETRSMRSKEEAHdyRYFPEPDLPPLEISDEWIEEIRAELPELPDAKRARFVEEYGLSEYDARVLTSDKELaDYFEAVV 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 266 EDINiNPTFVASILCSSIT--------NLERSGLDPnllknQEIFKLFQLLEEG----KIAKESIEIIFENimagkSKTV 333
Cdd:PRK05477 334 AAGA-DAKLAANWLMGELLgllneegiEIEESPITP-----EQLAELIKLIDDGtisgKIAKEVFEEMLET-----GGDP 402
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 334 EQAIKNTSIQSVNEDD-LEKIIGDIVENNNEII---KNQKERAIGPLMGIVMKELRGKASGETINNILLK 399
Cdd:PRK05477 403 DEIVEEKGLKQISDEGaLEAIVDEVLAANPKAVedyKAGKEKALGFLVGQVMKATKGKANPKLVNELLKE 472
|
|
| GatB |
COG0064 |
Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit [Translation, ribosomal structure and ... |
168-403 |
9.37e-20 |
|
Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit [Translation, ribosomal structure and biogenesis]; Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439834 [Multi-domain] Cd Length: 477 Bit Score: 90.85 E-value: 9.37e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 168 ILRIEHIRDKGIPID--TRL-ATQSGETKFLRPRPGAA--RMYPETDIPPIIITKEELSEAENKIPKSWDDSIKELETKY 242
Cdd:COG0064 231 IERQIELLESGGKIVqeTRLwDEDKGETRSMRSKEEAHdyRYFPEPDLPPLVISDEWIEEIRATLPELPDAKRERFVEEY 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 243 KINPQLAEQIFDSRYI-ELFEKIIEDINiNPTFVASILCSSI--------TNLERSGLDPnllknQEIFKLFQLLEEG-- 311
Cdd:COG0064 311 GLSEYDARVLTSDKELaDYFEAAVKAGA-DPKLAANWIMGELlrrlnergLEIEESPVTP-----EQLAELIKLIDDGti 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 312 --KIAKESIEIIFENimagkSKTVEQAIKNTSIQSV-NEDDLEKIIGDIVENNNEII---KNQKERAIGPLMGIVMKELR 385
Cdd:COG0064 385 sgKIAKEVFEEMLET-----GGDPEEIVEEKGLKQVsDEGALEAIVDEVLAANPDAVedyKAGKEKALGFLVGQVMKATK 459
|
250
....*....|....*...
gi 2442656250 386 GKASGETINNILLKNIKK 403
Cdd:COG0064 460 GKANPKLVNELLKEKLGG 477
|
|
| GatB_Yqey |
smart00845 |
GatB domain; This domain is found in GatB and proteins related to bacterial Yqey. It is about ... |
260-399 |
4.53e-18 |
|
GatB domain; This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Pssm-ID: 197913 [Multi-domain] Cd Length: 147 Bit Score: 80.24 E-value: 4.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 260 LFEKIIEDINiNPTFVASILCSSI-TNLERSGLDPNL--LKNQEIFKLFQLLEEGKIAKESIEIIFENIMAGkSKTVEQA 336
Cdd:smart00845 1 YFEEVVKAGA-DPKLAANWLLGELlGELNKEGLEIEEspITPEHLAELLKLIDDGTISGKIAKEVLEELLEG-GKSPEEI 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2442656250 337 IKNTSIQSVN-EDDLEKIIGDIVENNNEII---KNQKERAIGPLMGIVMKELRGKASGETINNILLK 399
Cdd:smart00845 79 VEEKGLKQISdEGELEAIVDEVIAENPDAVedyRAGKKKALGFLVGQVMKATRGKADPKLVNELLKE 145
|
|
| GatB_Yqey |
pfam02637 |
GatB domain; This domain is found in GatB. It is about 140 amino acid residues long. This ... |
259-399 |
1.54e-16 |
|
GatB domain; This domain is found in GatB. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB, which transamidates Glu-tRNA to Gln-tRNA.
Pssm-ID: 396969 [Multi-domain] Cd Length: 148 Bit Score: 76.06 E-value: 1.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 259 ELFEKIIEDININPTFVASILCSSITNLERSGLDP--NLLKNQEIFKLFQLLEEGKIAKESIEIIFEnIMAGKSKTVEQA 336
Cdd:pfam02637 1 DFFEEAVKAGADPKLAANWLLGELLGYLNKEGLDIdeSPLTPEHLAELIKLIDEGTISGKIAKEVLE-ELLENGKSPEEI 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2442656250 337 IKNTSIQSVN-EDDLEKIIGDIVENNN---EIIKNQKERAIGPLMGIVMKELRGKASGETINNILLK 399
Cdd:pfam02637 80 VEEKGLKQISdEEELEKIVDEVIAENPkavEDYKSGKEKALGFLVGQVMKKTRGKADPKLVNELLKE 146
|
|
| PLN02751 |
PLN02751 |
glutamyl-tRNA(Gln) amidotransferase |
101-404 |
2.96e-08 |
|
glutamyl-tRNA(Gln) amidotransferase
Pssm-ID: 215400 [Multi-domain] Cd Length: 544 Bit Score: 55.61 E-value: 2.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 101 IRLGKEVAE-------LVRFFGIG------GVFHSDelPNYGIEESDLEKLKKFAEIKENDAFLILASPQEkmHTIVEQI 167
Cdd:PLN02751 225 MRTGIEAAEygaelqrLVRYLGVSngnmqeGSLRCD--VNVSIRPVGQEEFGTKVEIKNMNSFSAMSRAID--FEISRQI 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 168 ILrIEHIRDKGIPIDTRLATQSGETKF-LRPRPGAA--RMYPETDIPPIIITKEELSEAENKIPKsWDDSIKELETKYKI 244
Cdd:PLN02751 301 LL-HRQGQGDEIVQETRLWDEGAQKTVtMRKKEGLAdyRYFPEPDLPEVVLTEEYVDSIRASMPE-LPEAKRRRYENMGL 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 245 NPQ----LAEqifDSRYIELFEKIIE---DININPTFVASILCSSITNlERSGLDPNLLKNQEIFKLFQLLEEGKIA-KE 316
Cdd:PLN02751 379 SMQdvlfLAN---DKNVAEFFDATLAkgaDAKLAANWIMGDIAAYLKN-EKVSISEIKLTPKELAELIASIKDGTISgKI 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 317 SIEIIFENImaGKSKTVEQAIKNTSI-QSVNEDDLEKIIGDIVENNN---EIIKNQKERAIGPLMGIVMKELRGKASGET 392
Cdd:PLN02751 455 GKEILPELL--AKGGTVKGLVEEKGLvQISDPAEIEAMVDKVLEENPkqlEQYRGGKTKLQGFFAGQVMKASKGKANPGL 532
|
330
....*....|..
gi 2442656250 393 INNILLKNIKKK 404
Cdd:PLN02751 533 LNKILMEKLNAK 544
|
|
| GatB_N |
pfam02934 |
GatB/GatE catalytic domain; This domain is found in the GatB and GatE proteins. |
168-220 |
6.85e-08 |
|
GatB/GatE catalytic domain; This domain is found in the GatB and GatE proteins.
Pssm-ID: 460754 Cd Length: 284 Bit Score: 53.54 E-value: 6.85e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2442656250 168 ILRIEHIRDKGIPID--TRLAT-QSGETKFLRPRPGAA--RMYPETDIPPIIITKEEL 220
Cdd:pfam02934 226 IERQIELLESGGKIRqeTRGWDeDKGETRSMRSKEEAHdyRYFPEPDLPPIVISEEWI 283
|
|
| GAD |
pfam02938 |
GAD domain; This domain is found in some members of the GatB and aspartyl tRNA synthetases. |
71-159 |
1.77e-05 |
|
GAD domain; This domain is found in some members of the GatB and aspartyl tRNA synthetases.
Pssm-ID: 397199 [Multi-domain] Cd Length: 94 Bit Score: 43.02 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2442656250 71 IQNAIKKNQKILAVSFKNMAGMFGFSPYEGIRLGKEVAELVRFF-GIGGVFHSDELPNYgIEESDLEKLKKFAEIKENDA 149
Cdd:pfam02938 1 FSEALKSGGSVKALRVPGAAGLSRKEIDELERFAKEYGAKGLAWiKVEGGGHTGPIAKF-LTEEEVEKLLEAVGAEDGDA 79
|
90
....*....|
gi 2442656250 150 FLILASPQEK 159
Cdd:pfam02938 80 LLFVADKKKT 89
|
|
| GatB_N |
pfam02934 |
GatB/GatE catalytic domain; This domain is found in the GatB and GatE proteins. |
7-38 |
3.14e-03 |
|
GatB/GatE catalytic domain; This domain is found in the GatB and GatE proteins.
Pssm-ID: 460754 Cd Length: 284 Bit Score: 39.29 E-value: 3.14e-03
10 20 30
....*....|....*....|....*....|..
gi 2442656250 7 EGGIVIEVKGVQQLDQLEKVVEYEAKRQHGLL 38
Cdd:pfam02934 202 ELGTRVEIKNLNSFRFVEKAIEYEIERQIELL 233
|
|
| |
