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Conserved domains on  [gi|2444595444|ref|WP_273610169|]
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MULTISPECIES: hypothetical protein [unclassified Pseudoalteromonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Mplasa_alph_rch super family cl37461
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 269-393 1.75e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


The actual alignment was detected with superfamily member TIGR04523:

Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 43.86  E-value: 1.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2444595444 269 LNKVNKNLDSINKnMISGYESndeRLDRLAKETQNSNELLSSIKKNTLEDNDTLTDIKTgqanannlleKIEKNTAPESF 348
Cdd:TIGR04523 154 LEKLNNKYNDLKK-QKEELEN---ELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKK----------KIQKNKSLESQ 219

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2444595444 349 IFSATRKQGGLNDIFTDE--DIQQIKTEIEEKQTEfneyIETIKSES 393
Cdd:TIGR04523 220 ISELKKQNNQLKDNIEKKqqEINEKTTEISNTQTQ----LNQLKDEQ 262
 
Name Accession Description Interval E-value
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 269-393 1.75e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 43.86  E-value: 1.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2444595444 269 LNKVNKNLDSINKnMISGYESndeRLDRLAKETQNSNELLSSIKKNTLEDNDTLTDIKTgqanannlleKIEKNTAPESF 348
Cdd:TIGR04523 154 LEKLNNKYNDLKK-QKEELEN---ELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKK----------KIQKNKSLESQ 219

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2444595444 349 IFSATRKQGGLNDIFTDE--DIQQIKTEIEEKQTEfneyIETIKSES 393
Cdd:TIGR04523 220 ISELKKQNNQLKDNIEKKqqEINEKTTEISNTQTQ----LNQLKDEQ 262
 
Name Accession Description Interval E-value
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 269-393 1.75e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 43.86  E-value: 1.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2444595444 269 LNKVNKNLDSINKnMISGYESndeRLDRLAKETQNSNELLSSIKKNTLEDNDTLTDIKTgqanannlleKIEKNTAPESF 348
Cdd:TIGR04523 154 LEKLNNKYNDLKK-QKEELEN---ELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKK----------KIQKNKSLESQ 219

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2444595444 349 IFSATRKQGGLNDIFTDE--DIQQIKTEIEEKQTEfneyIETIKSES 393
Cdd:TIGR04523 220 ISELKKQNNQLKDNIEKKqqEINEKTTEISNTQTQ----LNQLKDEQ 262
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 266-403 8.37e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 38.46  E-value: 8.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2444595444 266 IGALNKVNKNLDSINKNMISGYESNDERLDRLAKETQNSNELLSSIKKNTLEDNDTLT--DIKTGQANANNLLEKIEKNT 343
Cdd:TIGR04523 498 LKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKkeNLEKEIDEKNKEIEELKQTQ 577

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2444595444 344 apESFIFSATRKQgGLNDIFTDEdIQQIKTEIEEK---QTEFNEYIETIKSESSSLFTLDTSI 403
Cdd:TIGR04523 578 --KSLKKKQEEKQ-ELIDQKEKE-KKDLIKEIEEKekkISSLEKELEKAKKENEKLSSIIKNI 636
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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