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Conserved domains on  [gi|2458220628|ref|WP_275592003|]
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BspA family leucine-rich repeat surface protein [Campylobacter sp. RM12651]

Protein Classification

BspA family leucine-rich repeat surface protein( domain architecture ID 1003062)

BspA family leucine-rich repeat surface protein is a DUF285 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF285 super family cl37689
Mycoplasma protein of unknown function, DUF285; This region appears distantly related to ...
 1-65 1.10e-11

Mycoplasma protein of unknown function, DUF285; This region appears distantly related to leucine rich repeats.


The actual alignment was detected with superfamily member pfam03382:

Pssm-ID: 427272 [Multi-domain]  Cd Length: 120  Bit Score: 55.34  E-value: 1.10e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2458220628   1 MNTWDTGNVHDMSAMFYDCYSLNKKLS-FNTKNVEDFSGMFSWCKSLNQ-IIDFDMSSAKKIDGMFF 65
Cdd:pfam03382  42 ISKWDTSSVTNMSYMFAGATSFNQDISsWNTSNVTDMSRMFYNATSFNQdISSWNTSNVTDMSSMFA 108
 
Name Accession Description Interval E-value
DUF285 pfam03382
Mycoplasma protein of unknown function, DUF285; This region appears distantly related to ...
 1-65 1.10e-11

Mycoplasma protein of unknown function, DUF285; This region appears distantly related to leucine rich repeats.


Pssm-ID: 427272 [Multi-domain]  Cd Length: 120  Bit Score: 55.34  E-value: 1.10e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2458220628   1 MNTWDTGNVHDMSAMFYDCYSLNKKLS-FNTKNVEDFSGMFSWCKSLNQ-IIDFDMSSAKKIDGMFF 65
Cdd:pfam03382  42 ISKWDTSSVTNMSYMFAGATSFNQDISsWNTSNVTDMSRMFYNATSFNQdISSWNTSNVTDMSSMFA 108
 
Name Accession Description Interval E-value
DUF285 pfam03382
Mycoplasma protein of unknown function, DUF285; This region appears distantly related to ...
 1-65 1.10e-11

Mycoplasma protein of unknown function, DUF285; This region appears distantly related to leucine rich repeats.


Pssm-ID: 427272 [Multi-domain]  Cd Length: 120  Bit Score: 55.34  E-value: 1.10e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2458220628   1 MNTWDTGNVHDMSAMFYDCYSLNKKLS-FNTKNVEDFSGMFSWCKSLNQ-IIDFDMSSAKKIDGMFF 65
Cdd:pfam03382  42 ISKWDTSSVTNMSYMFAGATSFNQDISsWNTSNVTDMSRMFYNATSFNQdISSWNTSNVTDMSSMFA 108
DUF285 pfam03382
Mycoplasma protein of unknown function, DUF285; This region appears distantly related to ...
 2-64 2.12e-10

Mycoplasma protein of unknown function, DUF285; This region appears distantly related to leucine rich repeats.


Pssm-ID: 427272 [Multi-domain]  Cd Length: 120  Bit Score: 52.26  E-value: 2.12e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2458220628   2 NTWDTGNVHDMSAMFYDCYSLNKKLS-FNTKNVEDFSGMFSWCKSLNQ-IIDFDMSSAKKIDGMF 64
Cdd:pfam03382  18 GNWDTSNVTDMSGMFYGATNFNQDISkWDTSSVTNMSYMFAGATSFNQdISSWNTSNVTDMSRMF 82
DUF285 pfam03382
Mycoplasma protein of unknown function, DUF285; This region appears distantly related to ...
 2-51 4.97e-10

Mycoplasma protein of unknown function, DUF285; This region appears distantly related to leucine rich repeats.


Pssm-ID: 427272 [Multi-domain]  Cd Length: 120  Bit Score: 51.10  E-value: 4.97e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2458220628   2 NTWDTGNVHDMSAMFYDCYSLNKKLS-FNTKNVEDFSGMFSWCKSLNQIID 51
Cdd:pfam03382  68 SSWNTSNVTDMSRMFYNATSFNQDISsWNTSNVTDMSSMFAGATAFNQDLS 118
DUF285 pfam03382
Mycoplasma protein of unknown function, DUF285; This region appears distantly related to ...
 11-65 1.10e-06

Mycoplasma protein of unknown function, DUF285; This region appears distantly related to leucine rich repeats.


Pssm-ID: 427272 [Multi-domain]  Cd Length: 120  Bit Score: 42.63  E-value: 1.10e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2458220628  11 DMSAMFYDCYSLNKKLS-FNTKNVEDFSGMFSWCKSLNQII-DFDMSSAKKIDGMFF 65
Cdd:pfam03382   2 DMSSMFSGATSFNQDIGnWDTSNVTDMSGMFYGATNFNQDIsKWDTSSVTNMSYMFA 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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