|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
111-428 |
1.17e-166 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 470.73 E-value: 1.17e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 111 SQETGSTAADTAKYNAGLTKTRHRLRDRFNAFLAnFRSVDEEFFDDLEDLLIQSDVGYEMALKISDALRNEVKLQNAQSK 190
Cdd:PRK10416 7 KKKKEKKEGWFERLKKGLSKTRENFGEGINGLFA-KKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 191 ADVSRVIVQKMAEIYyqdsQNQDYHLNIDVQRsLNVILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAGAIEQ 270
Cdd:PRK10416 86 EELKELLKEELAEIL----EPVEKPLNIEEKK-PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 271 LQVWGTKVGVQTVAHAAGSDPASVVYDALQLAQQEHANVLLVDTAGRLQNNTNLMKELEKIKRIITREIPDAPHEVLLVI 350
Cdd:PRK10416 161 LQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVL 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2468578304 351 DATTGQNALVQAKQFQKATQVTGLVLAKLDGSSQGGIVLAINDELHLPVKLVGLGEQMDDLRDFDPEIYAQGLFSQLF 428
Cdd:PRK10416 241 DATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGGED 318
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
122-426 |
9.70e-166 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 467.96 E-value: 9.70e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 122 AKYNAGLTKTRHRLRDRFNAFLANFRSVDEEFFDDLEDLLIQSDVGYEMALKISDALRNEVKLQNAQSKADVSRVIVQKM 201
Cdd:COG0552 3 ERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 202 AEIYYQDSQNqdyhLNIDVQRsLNVILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQ 281
Cdd:COG0552 83 LEILDPVDKP----LAIEEKK-PFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 282 TVAHAAGSDPASVVYDALQLAQQEHANVLLVDTAGRLQNNTNLMKELEKIKRIITREIPDAPHEVLLVIDATTGQNALVQ 361
Cdd:COG0552 158 VIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQ 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2468578304 362 AKQFQKATQVTGLVLAKLDGSSQGGIVLAINDELHLPVKLVGLGEQMDDLRDFDPEIYAQGLFSQ 426
Cdd:COG0552 238 AKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGE 302
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
149-424 |
3.60e-128 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 371.59 E-value: 3.60e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 149 VDEEFFDDLEDLLIQSDVGYEMALKISDALRNEVKLQNAQSKADVSRVIVQKMAEIYyQDSQNQDYHLNIDVQ-RSLNVI 227
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEIL-KEDLLKNTDLELIVEeNKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 228 LFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVAHAAGSDPASVVYDALQLAQQEHA 307
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 308 NVLLVDTAGRLQNNTNLMKELEKIKRIITREIPDAPHEVLLVIDATTGQNALVQAKQFQKATQVTGLVLAKLDGSSQGGI 387
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 2468578304 388 VLAINDELHLPVKLVGLGEQMDDLRDFDPEIYAQGLF 424
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
225-423 |
5.53e-110 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 322.21 E-value: 5.53e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 225 NVILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVAHAAGSDPASVVYDALQLAQQ 304
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 305 EHANVLLVDTAGRLQNNTNLMKELEKIKRIITREIPDAPHEVLLVIDATTGQNALVQAKQFQKATQVTGLVLAKLDGSSQ 384
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 2468578304 385 GGIVLAINDELHLPVKLVGLGEQMDDLRDFDPEIYAQGL 423
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
225-424 |
7.51e-98 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 291.24 E-value: 7.51e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 225 NVILFVGVNGAGKTTTIGKLAARLK-KDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVAHAAGSDPASVVYDALQLAQ 303
Cdd:smart00962 2 GVILLVGPNGVGKTTTIAKLAARLKlKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 304 QEHANVLLVDTAGRLQNNTNLMKELEKIKRIItreipdAPHEVLLVIDATTGQNALVQAKQFQKATQVTGLVLAKLDGSS 383
Cdd:smart00962 82 ARGYDVVLIDTAGRLHNDENLMEELKKIKRVI------KPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTA 155
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2468578304 384 QGGIVLAINDELHLPVKLVGLGEQMDDLRDFDPEIYAQGLF 424
Cdd:smart00962 156 KGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLL 196
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
225-423 |
7.76e-96 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 285.98 E-value: 7.76e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 225 NVILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVAHAAGSDPASVVYDALQLAQQ 304
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 305 EHANVLLVDTAGRLQNNTNLMKELEKIKRIItreipdAPHEVLLVIDATTGQNALVQAKQFQKATQVTGLVLAKLDGSSQ 384
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 2468578304 385 GGIVLAINDELHLPVKLVGLGEQMDDLRDFDPEIYAQGL 423
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
100-425 |
3.95e-81 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 253.36 E-value: 3.95e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 100 SSTTTEGKEAISQETGSTAADTAKYNAGLTKTRHRLRDRFNAFLANFRSVDEEFFDDLEDL---LIQSDVGYEMALKISD 176
Cdd:PRK14974 10 SKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDLLEELeleLLESDVALEVAEEILE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 177 ALRNEVKLQNAQSKADVSRVIVQKMAE-IYYQDSQNQDYHLnIDVQRSLN---VILFVGVNGAGKTTTIGKLAARLKKDG 252
Cdd:PRK14974 90 SLKEKLVGKKVKRGEDVEEIVKNALKEaLLEVLSVGDLFDL-IEEIKSKGkpvVIVFVGVNGTGKTTTIAKLAYYLKKNG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 253 QKVILAAADTFRAGAIEQLQVWGTKVGVQTVAHAAGSDPASVVYDALQLAQQEHANVLLVDTAGRLQNNTNLMKELEKIK 332
Cdd:PRK14974 169 FSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIV 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 333 RIItreipdAPHEVLLVIDATTGQNALVQAKQFQKATQVTGLVLAKLDGSSQGGIVLAINDELHLPVKLVGLGEQMDDLR 412
Cdd:PRK14974 249 RVT------KPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYDDLI 322
|
330
....*....|...
gi 2468578304 413 DFDPEIYAQGLFS 425
Cdd:PRK14974 323 PFDPDWFVDKLLG 335
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
225-423 |
6.59e-73 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 227.26 E-value: 6.59e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 225 NVILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVAHAAGSDPASVVYDALQLAQQ 304
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 305 EHANVLLVDTAGRLQNNTNLMKELEKIKRIITreipdaPHEVLLVIDATTGQNALVQAKQFQKATQVTGLVLAKLDGSSQ 384
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEVES------PDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 2468578304 385 GGIVLAINDELHLPVKLVGLGEQMDDLRDFDPEIYAQGL 423
Cdd:cd03115 155 GGAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
225-421 |
3.31e-72 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 233.37 E-value: 3.31e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 225 NVILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVAHAAGSDPASVVYDALQLAQQ 304
Cdd:COG0541 101 TVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEEDGKDPVDIAKRALEYAKK 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 305 EHANVLLVDTAGRLQNNTNLMKELEKIKRIITreipdaPHEVLLVIDATTGQNALVQAKQFQKATQVTGLVLAKLDGSSQ 384
Cdd:COG0541 181 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVN------PDETLLVVDAMTGQDAVNVAKAFNEALGLTGVILTKLDGDAR 254
|
170 180 190
....*....|....*....|....*....|....*..
gi 2468578304 385 GGIVLAINDELHLPVKLVGLGEQMDDLRDFDPEIYAQ 421
Cdd:COG0541 255 GGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMAS 291
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
225-417 |
1.43e-66 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 210.92 E-value: 1.43e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 225 NVILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVAHAAGSDPASVVYDALQLAQQ 304
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 305 EHANVLLVDTAGRLQNNTNLMKELEKIKRIITreipdaPHEVLLVIDATTGQNALVQAKQFQKATQVTGLVLAKLDGSSQ 384
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDAR 154
|
170 180 190
....*....|....*....|....*....|...
gi 2468578304 385 GGIVLAINDELHLPVKLVGLGEQMDDLRDFDPE 417
Cdd:cd18539 155 GGAALSIRHVTGKPIKFIGVGEKIEDLEPFHPD 187
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
151-417 |
8.04e-58 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 196.20 E-value: 8.04e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 151 EEFFDDLEDLLIQSDVGYEMALKISDALR----NEVKLQNAQSKADVSRVIVQKMAEIYYQDSQNQDYHLNIdvqrslNV 226
Cdd:PRK00771 24 KEVVKDIQRALLQADVNVKLVKELSKSIKeralEEEPPKGLTPREHVIKIVYEELVKLLGEETEPLVLPLKP------QT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 227 ILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVAHAAGSDPASVVYDALQLAQQeh 306
Cdd:PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKK-- 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 307 ANVLLVDTAGRLQNNTNLMKELEKIKRIItreipdAPHEVLLVIDATTGQNALVQAKQFQKATQVTGLVLAKLDGSSQGG 386
Cdd:PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAV------KPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGTAKGG 249
|
250 260 270
....*....|....*....|....*....|.
gi 2468578304 387 IVLAINDELHLPVKLVGLGEQMDDLRDFDPE 417
Cdd:PRK00771 250 GALSAVAETGAPIKFIGTGEKIDDLERFDPD 280
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
225-417 |
7.22e-54 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 178.16 E-value: 7.22e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 225 NVILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVAHAAGSDPASVVYDALQLAQQ 304
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 305 EHANVLLVDTAGRLQNNTNLMKELEKIKRIItreipdAPHEVLLVIDATTGQNALVQAKQFQKATQVTGLVLAKLDGSSQ 384
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAV------KPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAK 154
|
170 180 190
....*....|....*....|....*....|...
gi 2468578304 385 GGIVLAINDELHLPVKLVGLGEQMDDLRDFDPE 417
Cdd:cd17875 155 GGGALSAVAATGAPIIFIGTGEHIDDLEPFDPK 187
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
226-417 |
7.19e-43 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 149.69 E-value: 7.19e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 226 VILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVAHAAGSDPASVVYDALQLAQQE 305
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 306 HANVLLVDTAGRLQNNTNLMKELEKikrIITREIPDApheVLLVIDATTGQNALVQAKQFQKAtqvtglvLAKLDGSSQG 385
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAK---LIKENNPDL---VLFVGEALVGNDAVDQLKKFNQA-------LADYSPSDNP 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2468578304 386 ----GIVLA----IND----------ELHLPVKLVGLGEQMDDLRDFDPE 417
Cdd:cd17876 149 rlidGIVLTkfdtIDDkvgaalsmvyATGQPIVFVGTGQTYTDLKKLNVK 198
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
143-423 |
2.72e-41 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 151.91 E-value: 2.72e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 143 LANFRSVDEE----FFDDLEDLLIQSDVGYEMALKISDALRNEVKLQNAQSKADVSRVIVQKMAE--IYYQDSQNQDYHL 216
Cdd:TIGR01425 16 MSSATVIDEEvintMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEelCNLVDPGVEAFTP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 217 NidvQRSLNVILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVAHAAGSDPASVVY 296
Cdd:TIGR01425 96 K---KGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIAS 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 297 DALQLAQQEHANVLLVDTAGRLQNNTNLMKELEKIKRIITreipdaPHEVLLVIDATTGQNALVQAKQFQKATQVTGLVL 376
Cdd:TIGR01425 173 EGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIK------PDSIIFVMDGSIGQAAFGQAKAFKDSVEVGSVII 246
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2468578304 377 AKLDGSSQGGIVLAINDELHLPVKLVGLGEQMDDLRDFDPEIYAQGL 423
Cdd:TIGR01425 247 TKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKL 293
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
143-424 |
1.17e-34 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 132.30 E-value: 1.17e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 143 LANFRSVDEEFFDDLEDLLIQSDVGYEMALKISDALRNEVKLQNAQS--KADVSRVIVQKMAEIyyqdsqnqdyhlnIDV 220
Cdd:COG1419 97 LAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDLSAEEAWRalLEALARRLPVAEDPL-------------LDE 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 221 QRslnVILFVGVNGAGKTTTIGKLAARLK-KDGQKVILAAADTFRAGAIEQLQVWGTKVGVqtvahaagsdPASVVYDA- 298
Cdd:COG1419 164 GG---VIALVGPTGVGKTTTIAKLAARFVlRGKKKVALITTDTYRIGAVEQLKTYARILGV----------PVEVAYDPe 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 299 -LQLAQQEHAN--VLLVDTAGRLQNNTNLMKELEKIKRiitreiPDAPHEVLLVIDATT-GQNALVQAKQFqKATQVTGL 374
Cdd:COG1419 231 eLKEALERLRDkdLVLIDTAGRSPRDPELIEELKALLD------AGPPIEVYLVLSATTkYEDLKEIVEAF-SSLGLDGL 303
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2468578304 375 VLAKLDGSSQGGIVLAINDELHLPVKLVGLGEQM-DDLRDFDPEIYAQGLF 424
Cdd:COG1419 304 ILTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLL 354
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
50-399 |
1.85e-30 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 121.92 E-value: 1.85e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 50 DSPKQKPTPDASEPQEQPTESTSISDNPAPPATDSKSQTATPEQTSPTAESSTTTEGKEAISQETGSTAADTAKYNAGLT 129
Cdd:PRK05703 54 DETPKKNPVLREEKRKPAKSILSLQALLEKRPSRTNSQDALLQAENALPEWKKELEKPSEPKEEEPKAAAESKVVQKELD 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 130 KTR---HRLRDRFNAFLANFRSVD--EEFFDDLEDLLIQSDVGYEMALKISDALRNEVKLQNAQSKADVSRVIVqKMAEI 204
Cdd:PRK05703 134 ELRdelKELKNLLEDQLSGLRQVEriPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELLA-NMIPV 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 205 YYQDSQNQDyhlnidvqrslNVILFVGVNGAGKTTTIGKLAAR--LKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVqt 282
Cdd:PRK05703 213 RVEDILKQG-----------GVVALVGPTGVGKTTTLAKLAARyaLLYGKKKVALITLDTYRIGAVEQLKTYAKIMGI-- 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 283 vahaagsdPASVVYDA--LQLAQQEHAN--VLLVDTAGRLQNNTNLMKELEKIKriitrEIPDAPHEVLLVIDATTGQNA 358
Cdd:PRK05703 280 --------PVEVVYDPkeLAKALEQLRDcdVILIDTAGRSQRDKRLIEELKALI-----EFSGEPIDVYLVLSATTKYED 346
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 2468578304 359 LVQA-KQFQKaTQVTGLVLAKLDGSSQGGIVLAINDELHLPV 399
Cdd:PRK05703 347 LKDIyKHFSR-LPLDGLIFTKLDETSSLGSILSLLIESGLPI 387
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
226-417 |
2.68e-27 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 107.64 E-value: 2.68e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 226 VILFVGVNGAGKTTTIGKLAARLKKD-GQKVILAAADTFRAGAIEQLQVWGTKVGVqtvahaagsdPASVVYDALQLAQQ 304
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKkGKKVALITTDTYRIGAVEQLKTYAEIMGI----------PVEVAEDPEDLADA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 305 ----EHANVLLVDTAGRLQNNTNLMKELEKikrIITREIPDaphEVLLVIDATTGQNALVQ-AKQFqKATQVTGLVLAKL 379
Cdd:cd17873 72 lerlSDRDLILIDTAGRSPRDKEQLEELKE---LLGAGEDI---EVHLVLSATTKAKDLKEiIERF-SPLGYRGLILTKL 144
|
170 180 190
....*....|....*....|....*....|....*....
gi 2468578304 380 DGSSQGGIVLAINDELHLPVKLVGLGEQM-DDLRDFDPE 417
Cdd:cd17873 145 DETTSLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPL 183
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
60-316 |
8.91e-19 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 85.85 E-value: 8.91e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 60 ASEPQEQPTESTSisdNPAPPATDSKSQTATPEQTSPTAESSTTTEGKEAISQETGSTAADtakynAGLTKTRHRLRDRF 139
Cdd:TIGR03499 49 AIDEEEAAAASAE---EEASKALEQADPKPLSATAEPLELPAPQEEPAAPAAQAAEPLLPE-----EELRKELEALRELL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 140 NAFLANFRSVDEEF-FDDLEDLLIQSDVGYEMALKISDALRNEVKLQNAQSKadVSRVIVQKMAEIYYQDsqnqdyhlni 218
Cdd:TIGR03499 121 ERLLAGLAWLQRPPeRAKLYERLLEAGVSEELARELLEKLPEDADAEDAWRW--LREALEGMLPVKPEED---------- 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 219 DVQRSLNVILFVGVNGAGKTTTIGKLAAR--LKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVqtvahaagsdPASVVY 296
Cdd:TIGR03499 189 PILEQGGVIALVGPTGVGKTTTLAKLAARfaLEHGKKKVALITTDTYRIGAVEQLKTYAEILGI----------PVKVAR 258
|
250 260
....*....|....*....|....
gi 2468578304 297 DA--LQLAQQEHAN--VLLVDTAG 316
Cdd:TIGR03499 259 DPkeLREALDRLRDkdLILIDTAG 282
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
225-354 |
5.43e-15 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 72.02 E-value: 5.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 225 NVILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQvwgtkvGVQTVAHAAGSDPASVVYDALQLAQQ 304
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARK 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2468578304 305 EHANVLLVDTAGRLQNNTNLMKELEKIKRiiTREIPDAPHEVLLVIDATT 354
Cdd:smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEEL--RLLLLLKSEKNLTVILTTN 124
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
77-410 |
2.33e-14 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 73.99 E-value: 2.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 77 PAPPATDSKSQTATPEQTSPTAesstttegKEAISQETGSTAADTAKYNAGltKTRHRLRDRFNAFLANFRSVDEEFFDD 156
Cdd:PRK14722 9 PADEPAAAKPALRLPEDTAAAV--------ADAVKARIERIVNDTVMQELG--SLRELMEEQFAGLMWNERQRRNPVHGA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 157 LEDLLIQSDVGYEMALKISDALRNEVKLQNAQSKADVSRVIVQkmAEIYYQDSQNQdyhlnidVQRSLNVILFVGVNGAG 236
Cdd:PRK14722 79 LTKYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLA--ANLPVLDSEDA-------LMERGGVFALMGPTGVG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 237 KTTTIGKLAAR--LKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVAHAAGSDPasvvydALQLAQQEHANVLLVDT 314
Cdd:PRK14722 150 KTTTTAKLAARcvMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL------QLALAELRNKHMVLIDT 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 315 AGRLQNNTNLMKELEKIKRiitreiPDAPHEVLLVIDATTGQNALVQAKQFQKAT---------QVTGLVLAKLDGSSQG 385
Cdd:PRK14722 224 IGMSQRDRTVSDQIAMLHG------ADTPVQRLLLLNATSHGDTLNEVVQAYRSAagqpkaalpDLAGCILTKLDEASNL 297
|
330 340
....*....|....*....|....*
gi 2468578304 386 GIVLAINDELHLPVKLVGLGEQMDD 410
Cdd:PRK14722 298 GGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
226-411 |
2.26e-13 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 71.94 E-value: 2.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 226 VILFVGVNGAGKTTTIGKLAARL--KKDGQKVILAAADTFRAGAIEQLQVWGTKVGVqtVAHAAGSDPasvvyDALQLAQ 303
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGI--AVHEADSAE-----SLLDLLE 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 304 Q-EHANVLLVDTAGRLQNNTNLMKELEKIKriitreipdAPHEV--LLVIDATTGQNALVQAKQFQKATQVTGLVLAKLD 380
Cdd:PRK12727 425 RlRDYKLVLIDTAGMGQRDRALAAQLNWLR---------AARQVtsLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLD 495
|
170 180 190
....*....|....*....|....*....|..
gi 2468578304 381 GSSQGGIVLAINDELHLPVKLVGLGEQM-DDL 411
Cdd:PRK12727 496 ETGRFGSALSVVVDHQMPITWVTDGQRVpDDL 527
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
226-407 |
6.06e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 70.99 E-value: 6.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 226 VILFVGVNGAGKTTTIGKLAAR--LKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVqtvahaagsdPASVVYDA--LQL 301
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARcvAREGADQLALLTTDSFRIGALEQLRIYGRILGV----------PVHAVKDAadLRF 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 302 AQQEHAN--VLLVDTAGRLQNNTNLMKELEKIKRIitreipDAPHEVLLVIDATTGQNAL---VQAKQFQKATQVTGLVL 376
Cdd:PRK14723 257 ALAALGDkhLVLIDTVGMSQRDRNVSEQIAMLCGV------GRPVRRLLLLNAASHGDTLnevVHAYRHGAGEDVDGCII 330
|
170 180 190
....*....|....*....|....*....|.
gi 2468578304 377 AKLDGSSQGGIVLAINDELHLPVKLVGLGEQ 407
Cdd:PRK14723 331 TKLDEATHLGPALDTVIRHRLPVHYVSTGQK 361
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
160-429 |
5.08e-11 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 64.32 E-value: 5.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 160 LLIQSDVgyEMALKISDALRNEVKLQNAQ--SKADVSRVIVQKMAEIYYQDsqnqdyhlNIdVQRSLNVILFVGVNGAGK 237
Cdd:PRK11889 186 MLEQNDV--EQYFIHAYAEKLKVKFENATmiTEEEVIEYILEDMRSHFNTE--------NV-FEKEVQTIALIGPTGVGK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 238 TTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVahaAGSDPASVVYDALQLAQQEHANVLLVDTAGR 317
Cdd:PRK11889 255 TTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI---AVRDEAAMTRALTYFKEEARVDYILIDTAGK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 318 LQNNTNLMKEL-EKIKRIitreipdAPHEVLLVIDATTGQNALVQAKQFQKATQVTGLVLAKLDGSSQGGIVLAINDELH 396
Cdd:PRK11889 332 NYRASETVEEMiETMGQV-------EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSS 404
|
250 260 270
....*....|....*....|....*....|....*.
gi 2468578304 397 LPVKLvglgeqMDDLRDFDPEIY---AQGLFSQLFQ 429
Cdd:PRK11889 405 APIVL------MTDGQDVKKNIHiatAEHLAKQMLQ 434
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
135-205 |
2.44e-10 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 56.41 E-value: 2.44e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2468578304 135 LRDRFNAFLANFRS---VDEEFFDDLEDLLIQSDVGYEMALKISDALRNEVK---LQNAQSKADVSRVIVQKMAEIY 205
Cdd:smart00963 1 LSKALGKLLGELFLtekDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKgevLKGLTPKQEVKKILKEELVKIL 77
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
226-408 |
6.38e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 60.75 E-value: 6.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 226 VILFVGVNGAGKTTTIGKLAARLK-KDGQKVILAAADTFRAGAIEQLQVWGTKVGVqtvahaagsdPASVVYDALQLAQ- 303
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFlHMGKSVSLYTTDNYRIAAIEQLKRYADTMGM----------PFYPVKDIKKFKEt 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 304 --QEHANVLLVDTAGRLQNNtnlMKELEKIKRIITREIPDAPHEVLLVIDATTG-QNALVQAKQFQkATQVTGLVLAKLD 380
Cdd:PRK12724 295 laRDGSELILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSyHHTLTVLKAYE-SLNYRRILLTKLD 370
|
170 180
....*....|....*....|....*...
gi 2468578304 381 GSSQGGIVLAINDELHLPVKLVGLGEQM 408
Cdd:PRK12724 371 EADFLGSFLELADTYSKSFTYLSVGQEV 398
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
11-316 |
1.80e-09 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 59.59 E-value: 1.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 11 TNTAAQTEASPQT--APDKDSDQQATTADSADTLDTPAKKSDSPKQKPTPDASEPQEQPtestsisdnPAPPATdsKSQT 88
Cdd:PRK06995 54 PAAAAPAAAQPPPaaAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE---------AQAPAA--PAER 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 89 ATPEQTSPTAESSTTTEGKEAISQETGSTAADTAKYNAGLTKTRHRLRDrfnafLANFRSVDEEFFDDLEDLLIQSdvgy 168
Cdd:PRK06995 123 AAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIERIVNDTVMQE-----LRSLRGMLEEQLASLAWGERQR---- 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 169 emalkiSDALRNEV--KLQNAQSKADVSRVIVQKMAEiYYQDSQNQDYHLNIdVQRSLNVI-----------LF--VGVN 233
Cdd:PRK06995 194 ------RDPVRAALlkHLLAAGFSAQLVRMLVDNLPE-GDDAEAALDWVQSA-LAKNLPVLdsedalldrggVFalMGPT 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 234 GAGKTTTIGKLAAR--LKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVqTVaHAagsdpasvVYDA--LQLAQQE--HA 307
Cdd:PRK06995 266 GVGKTTTTAKLAARcvMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV-PV-HA--------VKDAadLRLALSElrNK 335
|
....*....
gi 2468578304 308 NVLLVDTAG 316
Cdd:PRK06995 336 HIVLIDTIG 344
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
160-429 |
2.11e-09 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 58.22 E-value: 2.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 160 LLIQSDVGYEMALKISDALRneVKLQNAQskadvsrVIVQKMAEIYYQDSQNqdyHLNID--VQRSLNVILFVGVNGAGK 237
Cdd:PRK06731 21 MLEQNDVEQYFIHAYAEKLK--VKFENAT-------MITEEVIEYILEDMSS---HFNTEnvFEKEVQTIALIGPTGVGK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 238 TTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVahaAGSDPASVVYDALQLAQQEHANVLLVDTAGR 317
Cdd:PRK06731 89 TTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI---AVRDEAAMTRALTYFKEEARVDYILIDTAGK 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 318 lqnNTNLMKELEKIKRIITREIPDApheVLLVIDATTGQNALVQAKQFQKATQVTGLVLAKLDGSSQGGIVLAINDELHL 397
Cdd:PRK06731 166 ---NYRASETVEEMIETMGQVEPDY---ICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSA 239
|
250 260 270
....*....|....*....|....*....|....*
gi 2468578304 398 PVKLvglgeqMDDLRDFDPEIY---AQGLFSQLFQ 429
Cdd:PRK06731 240 PIVL------MTDGQDVKKNIHiatAEHLAKQMLQ 268
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
226-410 |
2.55e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 58.98 E-value: 2.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 226 VILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVahaAGSDPASVVYDALQLAQQE 305
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI---VATSPAELEEAVQYMTYVN 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 306 HANVLLVDTAGRlqnntNLMKElEKIKRIitREIPDAPHEVLLVIDATTGQNALVQAKQFQKATQ--VTGLVLAKLDGSS 383
Cdd:PRK12726 285 CVDHILIDTVGR-----NYLAE-ESVSEI--SAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEipIDGFIITKMDETT 356
|
170 180
....*....|....*....|....*..
gi 2468578304 384 QGGIVLAINDELHLPVKLVGLGEQMDD 410
Cdd:PRK12726 357 RIGDLYTVMQETNLPVLYMTDGQNITE 383
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
226-389 |
4.20e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 54.96 E-value: 4.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 226 VILFVGVNGAGKTTTIGKLAAR--LKKDGQKVILAAADTFRAGAIEQLQVWGTKVGVQTVAHAAGSDpasvvydaLQLAQ 303
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAARavIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIAD--------LQLML 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 304 QE--HANVLLVDTAGRLQNNTNLMKEL-------EKIKRiitreipdaphevLLVIDATTGQNALVQAKQFQKATQVTGL 374
Cdd:PRK14721 265 HElrGKHMVLIDTVGMSQRDQMLAEQIamlsqcgTQVKH-------------LLLLNATSSGDTLDEVISAYQGHGIHGC 331
|
170
....*....|....*
gi 2468578304 375 VLAKLDGSSQGGIVL 389
Cdd:PRK14721 332 IITKVDEAASLGIAL 346
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
135-201 |
4.88e-08 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 49.77 E-value: 4.88e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2468578304 135 LRDRFNAFLANFRS---VDEEFFDD----LEDLLIQSDVGYEMALKISDALR-NEVKLQNAQSKADVSRVIVQKM 201
Cdd:pfam02881 1 LGEKLSSLFKGLRGkgkIDEEDLEEalkeLEEALLEADVGVEVVKKIIERLReKAVGEKKLKPPQEVKKILKEEL 75
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
13-131 |
1.02e-07 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 54.54 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 13 TAAQTEASPQTAP-DKDSDQQA---TTADSADTLDTPAKKSDSPK-QKPTPDASEPQEQPTESTSISDNPAPPATDSKSQ 87
Cdd:pfam05109 482 TSGASPVTPSPSPrDNGTESKApdmTSPTSAVTTPTPNATSPTPAvTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPA 561
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2468578304 88 TATPE---------QTSPTaeSSTTTEGKEAISQETGSTA--ADTAKYNAGLTKT 131
Cdd:pfam05109 562 VTTPTpnatiptlgKTSPT--SAVTTPTPNATSPTVGETSpqANTTNHTLGGTSS 614
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
157-406 |
2.44e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 49.51 E-value: 2.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 157 LEDLLIQSDVGYEMALKISDALRNEVKLQNAQSKADVSRVIVQKMAEIYYQDSQNQDyhlnidvQRSLNVILFVGVNGAG 236
Cdd:PRK12723 114 IEDILRENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTIKCSGSIID-------NLKKRVFILVGPTGVG 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 237 KTTTIGKLAARL---KKDGQKVI-LAAADTFRAGAIEQLQVWGTKVGVqtvahaagsdPASVV--YDAL--QLAQQEHAN 308
Cdd:PRK12723 187 KTTTIAKLAAIYginSDDKSLNIkIITIDNYRIGAKKQIQTYGDIMGI----------PVKAIesFKDLkeEITQSKDFD 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 309 VLLVDTAGRlqNNTNLMKeLEKIKRIITREIPDAphEVLLVIDATTG----QNALVQAKQFQKATqvtgLVLAKLDGSSQ 384
Cdd:PRK12723 257 LVLVDTIGK--SPKDFMK-LAEMKELLNACGRDA--EFHLAVSSTTKtsdvKEIFHQFSPFSYKT----VIFTKLDETTC 327
|
250 260
....*....|....*....|..
gi 2468578304 385 GGIVLAINDELHLPVKLVGLGE 406
Cdd:PRK12723 328 VGNLISLIYEMRKEVSYVTDGQ 349
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
25-121 |
2.83e-05 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 46.26 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 25 PDKDSDQQATTA-DSADTLDTPAKKSDSPKQKPTPDASE---PQEQPTESTSISDNPAPPATDSKS---QTATPEQTSPT 97
Cdd:PHA03269 42 PAPAPHQAASRApDPAVAPTSAASRKPDLAQAPTPAASEkfdPAPAPHQAASRAPDPAVAPQLAAApkpDAAEAFTSAAQ 121
|
90 100
....*....|....*....|....
gi 2468578304 98 AESSTTTEGKEAISQeTGSTAADT 121
Cdd:PHA03269 122 AHEAPADAGTSAASK-KPDPAAHT 144
|
|
| PRK10856 |
PRK10856 |
cytoskeleton protein RodZ; |
15-104 |
4.32e-05 |
|
cytoskeleton protein RodZ;
Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 45.40 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 15 AQTEASPQTAPDKDSDQQATTADSADTLDTPAKKSDSPKQKPTPDASEPQEQPTESTSISDNPAPPATDSKSQTATPE-- 92
Cdd:PRK10856 155 SQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDga 234
|
90
....*....|..
gi 2468578304 93 QTSPTAESSTTT 104
Cdd:PRK10856 235 APLPTDQAGVST 246
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
225-336 |
4.74e-05 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 42.42 E-value: 4.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 225 NVILFVG-VNGAGKTTTIGKLAARLKKDGQKVILAAADTFragaieqlqvwgtkVGVQTVAHAagSDPASVVYDALQLAQ 303
Cdd:cd01983 1 RVIAVTGgKGGVGKTTLAAALAVALAAKGYKVLLIDLDDY--------------VLIDGGGGL--ETGLLLGTIVALLAL 64
|
90 100 110
....*....|....*....|....*....|....*
gi 2468578304 304 QEHANVLLV--DTAGRLQNNTNLMKELEKIKRIIT 336
Cdd:cd01983 65 KKADEVIVVvdPELGSLLEAVKLLLALLLLGIGIR 99
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
12-131 |
1.74e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 44.14 E-value: 1.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 12 NTAAQTEASPQTAPDKDSDQQA-TTADSADTLDTPAKKSDSPK-QKPTPDASEPQEQPTESTSISDNPAPPATdsksqTA 89
Cdd:pfam05109 519 NATSPTPAVTTPTPNATSPTLGkTSPTSAVTTPTPNATSPTPAvTTPTPNATIPTLGKTSPTSAVTTPTPNAT-----SP 593
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2468578304 90 TPEQTSPTAESSTTTEGKEAIS------QETGSTAADTAKYNAGLTKT 131
Cdd:pfam05109 594 TVGETSPQANTTNHTLGGTSSTpvvtspPKNATSAVTTGQHNITSSST 641
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
12-129 |
1.76e-04 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 43.80 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 12 NTAAQTEASPQTAPDKDSDQQATTADSADT--LDTPAKKSDSPKQKPTPDASEPQEQPTESTSISDNPAPPATDSkSQTA 89
Cdd:pfam17823 83 STEVTAEHTPHGTDLSEPATREGAADGAASraLAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAA-PRAA 161
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2468578304 90 TPEQTSPTAESSTTTEGKEAISQETGSTAADTAKYNAGLT 129
Cdd:pfam17823 162 IAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASS 201
|
|
| TMPK |
cd01672 |
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ... |
227-257 |
2.03e-04 |
|
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Pssm-ID: 238835 Cd Length: 200 Bit Score: 42.26 E-value: 2.03e-04
10 20 30
....*....|....*....|....*....|.
gi 2468578304 227 ILFVGVNGAGKTTTIGKLAARLKKDGQKVIL 257
Cdd:cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVL 33
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
17-134 |
3.16e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 43.37 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 17 TEASPQTAPDKDSDQQATTADSADTLDTPAKKSDSPKQKPTPDASEPQEQPTESTSISDNPAPPATD----SKSQTATPE 92
Cdd:pfam05109 671 TSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSpqapSGQKTAVPT 750
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2468578304 93 QTSPTAESSTTTEGKEAISQETGSTAADTAKYNAGLTKTRHR 134
Cdd:pfam05109 751 VTSTGGKANSTTGGKHTTGHGARTSTEPTTDYGGDSTTPRTR 792
|
|
| PRK13335 |
PRK13335 |
superantigen-like protein SSL3; Reviewed; |
11-121 |
8.85e-04 |
|
superantigen-like protein SSL3; Reviewed;
Pssm-ID: 139494 [Multi-domain] Cd Length: 356 Bit Score: 41.27 E-value: 8.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 11 TNTAAQTEASPQTAPDKDSDQQA---------TTADSADTLDTPAKKSDSPKQKPTPDASEPQEQPTESTSIS------- 74
Cdd:PRK13335 24 TTQSVKAEKIQSTKVDKVPTLKAerlaminitAGANSATTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISqpkqeeq 103
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2468578304 75 ---DNPAPPATDSKSQTATPEQTSPTaeSSTTTEGKEAISQETGSTAADT 121
Cdd:PRK13335 104 kslNISATPAPKQEQSQTTTESTTPK--TKVTTPPSTNTPQPMQSTKSDT 151
|
|
| PRK10905 |
PRK10905 |
cell division protein DamX; Validated |
19-106 |
1.16e-03 |
|
cell division protein DamX; Validated
Pssm-ID: 236792 [Multi-domain] Cd Length: 328 Bit Score: 40.69 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 19 ASPQTAPDKDSDQQATT-ADSADTLDTPAKKSDSPKQKPTPDASEPQE-------QPTESTSISDNPAPPATDSKS--QT 88
Cdd:PRK10905 138 ASRQTAKTQTAERPATTrPARKQAVIEPKKPQATAKTEPKPVAQTPKRtepaapvASTKAPAATSTPAPKETATTApvQT 217
|
90
....*....|....*...
gi 2468578304 89 ATPEQTSPTAESSTTTEG 106
Cdd:PRK10905 218 ASPAQTTATPAAGGKTAG 235
|
|
| Pneumo_att_G |
pfam05539 |
Pneumovirinae attachment membrane glycoprotein G; |
9-131 |
1.51e-03 |
|
Pneumovirinae attachment membrane glycoprotein G;
Pssm-ID: 114270 [Multi-domain] Cd Length: 408 Bit Score: 40.80 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 9 KKTNTAAQTEASPQTAPDKDSDQQATTADSADTLDTPAKKSDSPKQKPTPDASEPQE-----QPTESTSISDNPAP---P 80
Cdd:pfam05539 226 TSSNPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSphstaTPPPTTKRQETGRPtprP 305
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2468578304 81 ATDSKSQTATPEQTSPTAESSTTTEG----KEAISQETGSTAADTAKYNAGLTKT 131
Cdd:pfam05539 306 TATTQSGSSPPHSSPPGVQANPTTQNlvdcKELDPPKPNSICYGVGIYNEALPRG 360
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
14-106 |
1.81e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.74 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 14 AAQTEASPQTAPDKDSDQQATTADSADTLDTPAKKSDSPKQKPTPdasEPQEQPTESTSISDNPAPPATDSKSQTATPEQ 93
Cdd:PRK07764 422 APAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQP---APAPAAAPEPTAAPAPAPPAAPAPAAAPAAPA 498
|
90
....*....|...
gi 2468578304 94 TSPTAESSTTTEG 106
Cdd:PRK07764 499 APAAPAGADDAAT 511
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
215-257 |
2.53e-03 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 38.53 E-value: 2.53e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 2468578304 215 HLNIDVQRSlNVILFVGVNGAGKTTTIGKLAARLKKDGQKVIL 257
Cdd:cd03230 18 DISLTVEKG-EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKV 59
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
12-120 |
2.54e-03 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 40.28 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 12 NTAAQTEASPQTAPDKDSDQQATTADSADTLDTPAKKSDSPKQKPTPDASEPQEQPTESTSISD--NPAPPATDSKSQTA 89
Cdd:NF033609 42 NSVTQSDSASNESKSNDSSSVSAAPKTDDTNVSDTKTSSNTNNGETSVAQNPAQQETTQSASTNatTEETPVTGEATTTA 121
|
90 100 110
....*....|....*....|....*....|.
gi 2468578304 90 TPEQTSPTAESSTTTEGKEAISQETGSTAAD 120
Cdd:NF033609 122 TNQANTPATTQSSNTNAEELVNQTSNETTSN 152
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
234-259 |
2.68e-03 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 39.96 E-value: 2.68e-03
10 20
....*....|....*....|....*.
gi 2468578304 234 GAGKTTTIGKLAARLKKDGQKVILAA 259
Cdd:COG0507 150 GTGKTTTLRALLAALEALGLRVALAA 175
|
|
| APSK |
cd02027 |
Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5 ... |
226-266 |
2.76e-03 |
|
Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Pssm-ID: 238985 [Multi-domain] Cd Length: 149 Bit Score: 38.23 E-value: 2.76e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2468578304 226 VILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAADTFRAG 266
Cdd:cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHG 41
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
225-335 |
3.63e-03 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 37.92 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 225 NVILFVGVNGAGKTTTIGKLAARLKKDGQKVILAAAdTFRAgAIEQLQVwgTKVGVQTVAHAAGSDP--ASVVYDALQLA 302
Cdd:cd17933 13 RVSVLTGGAGTGKTTTLKALLAALEAEGKRVVLAAP-TGKA-AKRLSES--TGIEASTIHRLLGINPggGGFYYNEENPL 88
|
90 100 110
....*....|....*....|....*....|....*
gi 2468578304 303 QqehANVLLVDTAGRLQNNT--NLMKELEKIKRII 335
Cdd:cd17933 89 D---ADLLIVDEASMVDTRLmaALLSAIPAGARLI 120
|
|
| PRK08581 |
PRK08581 |
amidase domain-containing protein; |
6-130 |
3.91e-03 |
|
amidase domain-containing protein;
Pssm-ID: 236304 [Multi-domain] Cd Length: 619 Bit Score: 39.39 E-value: 3.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 6 IFKKKTNTAAQTEASPQTAPDKDSDQQATTADSADTLDTPAKKSDSPKQKpTPDASEpqEQPTESTSISDNPAPPATDSK 85
Cdd:PRK08581 126 LFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQK-APSSNN--TKPSTSNKQPNSPKPTQPNQS 202
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2468578304 86 SQTATPEQTSPTaesSTTTEGKEAISQETGSTAADTAKYNAGLTK 130
Cdd:PRK08581 203 NSQPASDDTANQ---KSSSKDNQSMSDSALDSILDQYSEDAKKTQ 244
|
|
| Not5 |
COG5665 |
CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]; |
11-119 |
4.20e-03 |
|
CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];
Pssm-ID: 444384 [Multi-domain] Cd Length: 874 Bit Score: 39.65 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 11 TNTAAQTEASPQTAPDKDSDQQATTADSADTL----------DTPAKKSDSPKQKPTPDASEPQEQPTESTSISDNPAPP 80
Cdd:COG5665 282 SNTPTSTAKAQPQPPTKKQPAKEPPSDTASGNpsapsvlinsDSPTSEDPATASVPTTEETTAFTTPSSVPSTPAEKDTP 361
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2468578304 81 ATDSKS-QTATPEQTSPTAESSTTTEGKEAISQETGSTAA 119
Cdd:COG5665 362 ATDLATpVSPTPPETSVDKKVSPDSATSSTKSEKEGGTAS 401
|
|
| PRK12495 |
PRK12495 |
hypothetical protein; Provisional |
16-138 |
5.08e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 183558 [Multi-domain] Cd Length: 226 Bit Score: 38.31 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 16 QTEASPQTAPDKDSDQQA-TTADSADTLD--TPAKKSDSPKQKPTPDASEPQEQPTESTSISDNPAP--------PATDS 84
Cdd:PRK12495 65 QQPVTEDGAAGDDAGDGAeATAPSDAGSQasPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPataaardgPTPDP 144
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2468578304 85 KSQTATPEQTSPTAESSTTTEGKEAISQETGSTAADTAKYNAGLTKTRHRLRDR 138
Cdd:PRK12495 145 TAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGTLQAARESLVETLARFARR 198
|
|
| PRK08581 |
PRK08581 |
amidase domain-containing protein; |
11-116 |
5.11e-03 |
|
amidase domain-containing protein;
Pssm-ID: 236304 [Multi-domain] Cd Length: 619 Bit Score: 39.00 E-value: 5.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 11 TNTAAQTEASPQTAPDKDSDQQATTADSAdTLDTPAKKSDSPKQKPTPDASEPQEQPTESTSISDNPAPPATDSKSQTAT 90
Cdd:PRK08581 199 PNQSNSQPASDDTANQKSSSKDNQSMSDS-ALDSILDQYSEDAKKTQKDYASQSKKDKTETSNTKNPQLPTQDELKHKSK 277
|
90 100 110
....*....|....*....|....*....|...
gi 2468578304 91 PEQ-------TSPTAESSTTTEGKEAISQETGS 116
Cdd:PRK08581 278 PAQsfendvnQSNTRSTSLFETGPSLSNNDDSG 310
|
|
| katE |
PRK11249 |
hydroperoxidase II; Provisional |
27-106 |
5.67e-03 |
|
hydroperoxidase II; Provisional
Pssm-ID: 236886 [Multi-domain] Cd Length: 752 Bit Score: 39.26 E-value: 5.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468578304 27 KDSDQQATTADSADT---LDTPAKKSDSpkQKPTPDASEPQEQPTESTSIsdnPAPPATDSKSQTATPEQTSPTAESSTT 103
Cdd:PRK11249 5 NPHQHQSPLHDSSEAkpgMDSLAPEDGS--HRPAPEPTPPGAQPTAPGSL---KAPDTRNEKLNSLEAFRKGSEGYALTT 79
|
...
gi 2468578304 104 TEG 106
Cdd:PRK11249 80 NQG 82
|
|
| MobB |
COG1763 |
Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme transport and metabolism]; ... |
226-255 |
8.56e-03 |
|
Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme transport and metabolism]; Molybdopterin-guanine dinucleotide biosynthesis protein is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 441369 [Multi-domain] Cd Length: 162 Bit Score: 37.08 E-value: 8.56e-03
10 20 30
....*....|....*....|....*....|
gi 2468578304 226 VILFVGVNGAGKTTTIGKLAARLKKDGQKV 255
Cdd:COG1763 3 VLGIVGYSGSGKTTLLEKLIPELKARGLRV 32
|
|
| Tmk |
COG0125 |
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ... |
227-257 |
8.59e-03 |
|
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis
Pssm-ID: 439895 [Multi-domain] Cd Length: 206 Bit Score: 37.44 E-value: 8.59e-03
10 20 30
....*....|....*....|....*....|.
gi 2468578304 227 ILFVGVNGAGKTTTIGKLAARLKKDGQKVIL 257
Cdd:COG0125 6 IVFEGIDGSGKSTQIKLLAEYLEARGYDVVL 36
|
|
| |
